RNA–Protein interactions for RNA: ENST00000544996.1

CCDC78-216, Transcript of coiled-coil domain containing 78, humanhuman

TSL 4

Gene CCDC78, Length 551 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC78-216ENST00000544996 LMNTD1Q8N9Z9 388 aa15.15■□□□□ 0.02
CCDC78-216ENST00000544996 CD200R1Q8TD46 325 aa15.15■□□□□ 0.02
CCDC78-216ENST00000544996 LRFN5Q96NI6 719 aa15.15■□□□□ 0.02
CCDC78-216ENST00000544996 GPR87Q9BY21 358 aa15.15■□□□□ 0.02
CCDC78-216ENST00000544996 PLAC1Q9HBJ0 212 aa15.15■□□□□ 0.02
CCDC78-216ENST00000544996 IRAK4Q9NWZ3 460 aa15.15■□□□□ 0.02
CCDC78-216ENST00000544996 ZFATQ9P243 1243 aa15.15■□□□□ 0.02
CCDC78-216ENST00000544996 CORO1CQ9ULV4 474 aaPredicted RBP15.15■□□□□ 0.02
CCDC78-216ENST00000544996 PLCL2Q9UPR0 1127 aa15.15■□□□□ 0.02
CCDC78-216ENST00000544996 AP1M2Q9Y6Q5 423 aa15.15■□□□□ 0.02
CCDC78-216ENST00000544996 MYO1CO00159 1063 aa15.14■□□□□ 0.01
CCDC78-216ENST00000544996 MEN1O00255 615 aa15.14■□□□□ 0.01
CCDC78-216ENST00000544996 NKX2-8O15522 239 aa15.14■□□□□ 0.01
CCDC78-216ENST00000544996 PRKAR1AP10644 381 aa15.14■□□□□ 0.01
CCDC78-216ENST00000544996 MCM3P25205 808 aa15.14■□□□□ 0.01
CCDC78-216ENST00000544996 GABRB3P28472 473 aa15.14■□□□□ 0.01
CCDC78-216ENST00000544996 RPS15P62841 145 aaKnown RBP15.14■□□□□ 0.01
CCDC78-216ENST00000544996 MGAT5Q09328 741 aa15.14■□□□□ 0.01
CCDC78-216ENST00000544996 CBLBQ13191 982 aa15.14■□□□□ 0.01
CCDC78-216ENST00000544996 DNASE1L3Q13609 305 aa15.14■□□□□ 0.01
CCDC78-216ENST00000544996 DEFB110Q30KQ9 67 aa15.14■□□□□ 0.01
CCDC78-216ENST00000544996 CRTC2Q53ET0 693 aaPredicted RBP15.14■□□□□ 0.01
CCDC78-216ENST00000544996 EEF1AKMT2Q5JPI9 291 aaKnown RBP15.14■□□□□ 0.01
CCDC78-216ENST00000544996 PRAMEF17Q5VTA0 474 aa15.14■□□□□ 0.01
CCDC78-216ENST00000544996 DUPD1Q68J44 220 aa15.14■□□□□ 0.01
CCDC78-216ENST00000544996 C16orf46Q6P387 395 aa15.14■□□□□ 0.01
CCDC78-216ENST00000544996 FAM20CQ8IXL6 584 aa15.14■□□□□ 0.01
CCDC78-216ENST00000544996 PALM2Q8IXS6 379 aa15.14■□□□□ 0.01
CCDC78-216ENST00000544996 GPATCH11Q8N954 259 aa15.14■□□□□ 0.01
CCDC78-216ENST00000544996 SLC38A9Q8NBW4 561 aa15.14■□□□□ 0.01
CCDC78-216ENST00000544996 FBXO15Q8NCQ5 510 aaPredicted RBP15.14■□□□□ 0.01
CCDC78-216ENST00000544996 DENND1AQ8TEH3 1009 aa15.14■□□□□ 0.01
CCDC78-216ENST00000544996 PYROXD1Q8WU10 500 aa15.14■□□□□ 0.01
CCDC78-216ENST00000544996 CT55Q8WUE5 264 aa15.14■□□□□ 0.01
CCDC78-216ENST00000544996 ASB11Q8WXH4 323 aa15.14■□□□□ 0.01
CCDC78-216ENST00000544996 SMPDL3AQ92484 453 aa15.14■□□□□ 0.01
CCDC78-216ENST00000544996 ZNF592Q92610 1267 aa15.14■□□□□ 0.01
CCDC78-216ENST00000544996 EXTL1Q92935 676 aa15.14■□□□□ 0.01
CCDC78-216ENST00000544996 ZUFSPQ96AP4 578 aa15.14■□□□□ 0.01
CCDC78-216ENST00000544996 WDR83Q9BRX9 315 aaKnown RBP15.14■□□□□ 0.01
CCDC78-216ENST00000544996 FAM117AQ9C073 453 aa15.14■□□□□ 0.01
CCDC78-216ENST00000544996 PCDHGA6Q9Y5G7 932 aa15.14■□□□□ 0.01
CCDC78-216ENST00000544996 KRT87PA6NCN2 255 aa15.13■□□□□ 0.01
CCDC78-216ENST00000544996 TARM1B6A8C7 271 aa15.13■□□□□ 0.01
CCDC78-216ENST00000544996 GFYI3L273 518 aa15.13■□□□□ 0.01
CCDC78-216ENST00000544996 EIF3HO15372 352 aaKnown RBP eCLIP15.13■□□□□ 0.01
CCDC78-216ENST00000544996 ZSCAN9O15535 394 aaPredicted RBP15.13■□□□□ 0.01
CCDC78-216ENST00000544996 ZNF749O43361 778 aa15.13■□□□□ 0.01
CCDC78-216ENST00000544996 PRICKLE3O43900 615 aaPredicted RBP15.13■□□□□ 0.01
CCDC78-216ENST00000544996 SYF2O95926 243 aaKnown RBP15.13■□□□□ 0.01
CCDC78-216ENST00000544996 TUBB4AP04350 444 aa15.13■□□□□ 0.01
CCDC78-216ENST00000544996 AGXTP21549 392 aa15.13■□□□□ 0.01
CCDC78-216ENST00000544996 F8A1P23610 371 aa15.13■□□□□ 0.01
CCDC78-216ENST00000544996 RPA3P35244 121 aaPredicted RBP15.13■□□□□ 0.01
CCDC78-216ENST00000544996 CDC20Q12834 499 aa15.13■□□□□ 0.01
CCDC78-216ENST00000544996 GPS2Q13227 327 aa15.13■□□□□ 0.01
CCDC78-216ENST00000544996 PDAP1Q13442 181 aaKnown RBP15.13■□□□□ 0.01
CCDC78-216ENST00000544996 NAA25Q14CX7 972 aa15.13■□□□□ 0.01
CCDC78-216ENST00000544996 FASTKD3Q14CZ7 662 aaKnown RBP15.13■□□□□ 0.01
CCDC78-216ENST00000544996 TBR1Q16650 682 aa15.13■□□□□ 0.01
CCDC78-216ENST00000544996 WHAMMP3Q1A5X7 153 aa15.13■□□□□ 0.01
CCDC78-216ENST00000544996 ZC3H12BQ5HYM0 836 aaKnown RBP15.13■□□□□ 0.01
CCDC78-216ENST00000544996 RBM20Q5T481 1227 aaKnown RBP15.13■□□□□ 0.01
CCDC78-216ENST00000544996 TLDC1Q6P9B6 456 aa15.13■□□□□ 0.01
CCDC78-216ENST00000544996 FAM199XQ6PEV8 388 aaPredicted RBP15.13■□□□□ 0.01
CCDC78-216ENST00000544996 BORAQ6PGQ7 559 aa15.13■□□□□ 0.01
CCDC78-216ENST00000544996 FIGLAQ6QHK4 219 aa15.13■□□□□ 0.01
CCDC78-216ENST00000544996 PCSK4Q6UW60 755 aa15.13■□□□□ 0.01
CCDC78-216ENST00000544996 UBE2R2Q712K3 238 aaPredicted RBP15.13■□□□□ 0.01
CCDC78-216ENST00000544996 DSELQ8IZU8 1212 aa15.13■□□□□ 0.01
CCDC78-216ENST00000544996 DNAJC22Q8N4W6 341 aa15.13■□□□□ 0.01
CCDC78-216ENST00000544996 SEC14L1Q92503 715 aa15.13■□□□□ 0.01
CCDC78-216ENST00000544996 PKP4Q99569 1192 aa15.13■□□□□ 0.01
CCDC78-216ENST00000544996 DPH2Q9BQC3 489 aaPredicted RBP15.13■□□□□ 0.01
CCDC78-216ENST00000544996 SAYSD1Q9NPB0 183 aa15.13■□□□□ 0.01
CCDC78-216ENST00000544996 NSMCE4AQ9NXX6 385 aa15.13■□□□□ 0.01
CCDC78-216ENST00000544996 KLHL20Q9Y2M5 609 aa15.13■□□□□ 0.01
CCDC78-216ENST00000544996 VWA7Q9Y334 891 aa15.13■□□□□ 0.01
CCDC78-216ENST00000544996 MRPS18BQ9Y676 258 aaKnown RBP15.13■□□□□ 0.01
CCDC78-216ENST00000544996 KIF2AO00139 706 aaPredicted RBP15.12■□□□□ 0.01
CCDC78-216ENST00000544996 TERTO14746 1132 aaKnown RBP15.12■□□□□ 0.01
CCDC78-216ENST00000544996 CREG1O75629 220 aa15.12■□□□□ 0.01
CCDC78-216ENST00000544996 SLC16A8O95907 504 aa15.12■□□□□ 0.01
CCDC78-216ENST00000544996 RECKO95980 971 aa15.12■□□□□ 0.01
CCDC78-216ENST00000544996 C8GP07360 202 aa15.12■□□□□ 0.01
CCDC78-216ENST00000544996 ERGP11308 486 aa15.12■□□□□ 0.01
CCDC78-216ENST00000544996 CMPK1P30085 196 aa15.12■□□□□ 0.01
CCDC78-216ENST00000544996 RORAP35398 523 aa15.12■□□□□ 0.01
CCDC78-216ENST00000544996 CCR10P46092 362 aa15.12■□□□□ 0.01
CCDC78-216ENST00000544996 GABRA4P48169 554 aa15.12■□□□□ 0.01
CCDC78-216ENST00000544996 PNLIPRP1P54315 467 aa15.12■□□□□ 0.01
CCDC78-216ENST00000544996 PLTPP55058 493 aa15.12■□□□□ 0.01
CCDC78-216ENST00000544996 CDKN2DP55273 166 aa15.12■□□□□ 0.01
CCDC78-216ENST00000544996 TSTA3Q13630 321 aaPredicted RBP15.12■□□□□ 0.01
CCDC78-216ENST00000544996 HECTD2Q5U5R9 776 aa15.12■□□□□ 0.01
CCDC78-216ENST00000544996 FAM45BPQ6NSW5 357 aa15.12■□□□□ 0.01
CCDC78-216ENST00000544996 PAQR3Q6TCH7 311 aa15.12■□□□□ 0.01
CCDC78-216ENST00000544996 CYHR1Q6ZMK1 362 aa15.12■□□□□ 0.01
CCDC78-216ENST00000544996 ZNF517Q6ZMY9 492 aaPredicted RBP15.12■□□□□ 0.01
CCDC78-216ENST00000544996 PIWIL4Q7Z3Z4 852 aaKnown RBP15.12■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms