RNA–Protein interactions for RNA: ENST00000541259.1

DDX55-208, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 460 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-208ENST00000541259 PRR23CQ6ZRP0 262 aa9.05□□□□□ -0.96
DDX55-208ENST00000541259 ZCCHC23Q6ZST2 131 aa9.05□□□□□ -0.96
DDX55-208ENST00000541259 TMEM26Q6ZUK4 368 aa9.05□□□□□ -0.96
DDX55-208ENST00000541259 ASCL5Q7RTU5 278 aa9.05□□□□□ -0.96
DDX55-208ENST00000541259 TAX1BP1Q86VP1 789 aa9.05□□□□□ -0.96
DDX55-208ENST00000541259 NUDCD3Q8IVD9 361 aa9.05□□□□□ -0.96
DDX55-208ENST00000541259 LRRC56Q8IYG6 542 aaPredicted RBP9.05□□□□□ -0.96
DDX55-208ENST00000541259 ARL10Q8N8L6 244 aa9.05□□□□□ -0.96
DDX55-208ENST00000541259 LINC01555Q8NAE3 123 aa9.05□□□□□ -0.96
DDX55-208ENST00000541259 PDPRQ8NCN5 879 aa9.05□□□□□ -0.96
DDX55-208ENST00000541259 OR4E2Q8NGC2 313 aa9.05□□□□□ -0.96
DDX55-208ENST00000541259 RDH11Q8TC12 318 aa9.05□□□□□ -0.96
DDX55-208ENST00000541259 MAGEC3Q8TD91 643 aa9.05□□□□□ -0.96
DDX55-208ENST00000541259 LCN9Q8WX39 176 aa9.05□□□□□ -0.96
DDX55-208ENST00000541259 PYCR2Q96C36 320 aa9.05□□□□□ -0.96
DDX55-208ENST00000541259 APOLD1Q96LR9 279 aa9.05□□□□□ -0.96
DDX55-208ENST00000541259 TMEM237Q96Q45 408 aa9.05□□□□□ -0.96
DDX55-208ENST00000541259 EDEM2Q9BV94 578 aa9.05□□□□□ -0.96
DDX55-208ENST00000541259 CNOT10Q9H9A5 744 aaKnown RBP9.05□□□□□ -0.96
DDX55-208ENST00000541259 ABCF3Q9NUQ8 709 aa9.05□□□□□ -0.96
DDX55-208ENST00000541259 POT1Q9NUX5 634 aa9.05□□□□□ -0.96
DDX55-208ENST00000541259 HCN4Q9Y3Q4 1203 aa9.05□□□□□ -0.96
DDX55-208ENST00000541259 COL5A1P20908 1838 aaPredicted RBP9.05□□□□□ -0.96
DDX55-208ENST00000541259 A0A1W2PPV9 198 aa9.04□□□□□ -0.96
DDX55-208ENST00000541259 PABPN1LA6NDY0 278 aaKnown RBP9.04□□□□□ -0.96
DDX55-208ENST00000541259 C4orf47A7E2U8 309 aa9.04□□□□□ -0.96
DDX55-208ENST00000541259 E7ENX8 843 aa9.04□□□□□ -0.96
DDX55-208ENST00000541259 BTN3A3O00478 584 aa9.04□□□□□ -0.96
DDX55-208ENST00000541259 POLR3GO15318 223 aaPredicted RBP9.04□□□□□ -0.96
DDX55-208ENST00000541259 TRIM13O60858 407 aa9.04□□□□□ -0.96
DDX55-208ENST00000541259 LRP3O75074 770 aa9.04□□□□□ -0.96
DDX55-208ENST00000541259 ALPPL2P10696 532 aa9.04□□□□□ -0.96
DDX55-208ENST00000541259 ERGP11308 486 aa9.04□□□□□ -0.96
DDX55-208ENST00000541259 IMPDH1P20839 514 aa9.04□□□□□ -0.96
DDX55-208ENST00000541259 BGNP21810 368 aa9.04□□□□□ -0.96
DDX55-208ENST00000541259 NDUFS1P28331 727 aa9.04□□□□□ -0.96
DDX55-208ENST00000541259 EEF1DP29692 281 aaKnown RBP9.04□□□□□ -0.96
DDX55-208ENST00000541259 PKLRP30613 574 aa9.04□□□□□ -0.96
DDX55-208ENST00000541259 CCR10P46092 362 aa9.04□□□□□ -0.96
DDX55-208ENST00000541259 FASLGP48023 281 aa9.04□□□□□ -0.96
DDX55-208ENST00000541259 SLC6A12P48065 614 aa9.04□□□□□ -0.96
DDX55-208ENST00000541259 PNLIPRP1P54315 467 aa9.04□□□□□ -0.96
DDX55-208ENST00000541259 ALDH18A1P54886 795 aaKnown RBP9.04□□□□□ -0.96
DDX55-208ENST00000541259 YBX1P67809 324 aaKnown RBP9.04□□□□□ -0.96
DDX55-208ENST00000541259 NFKB2Q00653 900 aa9.04□□□□□ -0.96
DDX55-208ENST00000541259 NHLH1Q02575 133 aa9.04□□□□□ -0.96
DDX55-208ENST00000541259 TAP2Q03519 686 aa9.04□□□□□ -0.96
DDX55-208ENST00000541259 TSTA3Q13630 321 aaPredicted RBP9.04□□□□□ -0.96
DDX55-208ENST00000541259 SUZ12Q15022 739 aaKnown RBP9.04□□□□□ -0.96
DDX55-208ENST00000541259 SETDB1Q15047 1291 aa9.04□□□□□ -0.96
DDX55-208ENST00000541259 PLCL1Q15111 1095 aa9.04□□□□□ -0.96
DDX55-208ENST00000541259 CYP2A13Q16696 494 aa9.04□□□□□ -0.96
DDX55-208ENST00000541259 PTCHD3Q3KNS1 767 aa9.04□□□□□ -0.96
DDX55-208ENST00000541259 AASDHQ4L235 1098 aaPredicted RBP9.04□□□□□ -0.96
DDX55-208ENST00000541259 UNC50Q53HI1 259 aa9.04□□□□□ -0.96
DDX55-208ENST00000541259 C4orf48Q5BLP8 95 aa9.04□□□□□ -0.96
DDX55-208ENST00000541259 CDKL4Q5MAI5 379 aa9.04□□□□□ -0.96
DDX55-208ENST00000541259 ZNF678Q5SXM1 525 aa9.04□□□□□ -0.96
DDX55-208ENST00000541259 LIPMQ5VYY2 423 aa9.04□□□□□ -0.96
DDX55-208ENST00000541259 FAM219BQ5XKK7 198 aa9.04□□□□□ -0.96
DDX55-208ENST00000541259 TTC19Q6DKK2 380 aaPredicted RBP9.04□□□□□ -0.96
DDX55-208ENST00000541259 ZCCHC8Q6NZY4 707 aaKnown RBP9.04□□□□□ -0.96
DDX55-208ENST00000541259 SUSD1Q6UWL2 747 aa9.04□□□□□ -0.96
DDX55-208ENST00000541259 ATG14Q6ZNE5 492 aa9.04□□□□□ -0.96
DDX55-208ENST00000541259 SYTL1Q8IYJ3 562 aa9.04□□□□□ -0.96
DDX55-208ENST00000541259 ARFGAP2Q8N6H7 521 aa9.04□□□□□ -0.96
DDX55-208ENST00000541259 FAM181AQ8N9Y4 354 aa9.04□□□□□ -0.96
DDX55-208ENST00000541259 FAM76AQ8TAV0 307 aa9.04□□□□□ -0.96
DDX55-208ENST00000541259 ZFPM2Q8WW38 1151 aa9.04□□□□□ -0.96
DDX55-208ENST00000541259 NSUN5Q96P11 429 aaKnown RBP9.04□□□□□ -0.96
DDX55-208ENST00000541259 OCSTAMPQ9BR26 566 aa9.04□□□□□ -0.96
DDX55-208ENST00000541259 DUSP23Q9BVJ7 150 aa9.04□□□□□ -0.96
DDX55-208ENST00000541259 GATA5Q9BWX5 397 aaPredicted RBP9.04□□□□□ -0.96
DDX55-208ENST00000541259 PITPNM3Q9BZ71 974 aa9.04□□□□□ -0.96
DDX55-208ENST00000541259 CD244Q9BZW8 370 aa9.04□□□□□ -0.96
DDX55-208ENST00000541259 TMEM9BQ9NQ34 198 aa9.04□□□□□ -0.96
DDX55-208ENST00000541259 INTS9Q9NV88 658 aaKnown RBP9.04□□□□□ -0.96
DDX55-208ENST00000541259 INTS7Q9NVH2 962 aaKnown RBP9.04□□□□□ -0.96
DDX55-208ENST00000541259 SPHK1Q9NYA1 384 aa9.04□□□□□ -0.96
DDX55-208ENST00000541259 WWOXQ9NZC7 414 aa9.04□□□□□ -0.96
DDX55-208ENST00000541259 SPATA7Q9P0W8 599 aa9.04□□□□□ -0.96
DDX55-208ENST00000541259 LRIT1Q9P2V4 623 aa9.04□□□□□ -0.96
DDX55-208ENST00000541259 MID2Q9UJV3 735 aa9.04□□□□□ -0.96
DDX55-208ENST00000541259 CDV3Q9UKY7 258 aaKnown RBP9.04□□□□□ -0.96
DDX55-208ENST00000541259 PADI4Q9UM07 663 aa9.04□□□□□ -0.96
DDX55-208ENST00000541259 SH2B3Q9UQQ2 575 aa9.04□□□□□ -0.96
DDX55-208ENST00000541259 PCDHGB2Q9Y5G2 931 aa9.04□□□□□ -0.96
DDX55-208ENST00000541259 SPTBP11277 2137 aa9.04□□□□□ -0.96
DDX55-208ENST00000541259 CPED1A4D0V7 1026 aa9.03□□□□□ -0.96
DDX55-208ENST00000541259 OR6C74A6NCV1 312 aa9.03□□□□□ -0.96
DDX55-208ENST00000541259 RHPN2P1A8MT19 583 aa9.03□□□□□ -0.96
DDX55-208ENST00000541259 STX16-NPEPL1H3BU86 382 aa9.03□□□□□ -0.96
DDX55-208ENST00000541259 PPP6CO00743 305 aa9.03□□□□□ -0.96
DDX55-208ENST00000541259 STX16O14662 325 aa9.03□□□□□ -0.96
DDX55-208ENST00000541259 BIRC5O15392 142 aa9.03□□□□□ -0.96
DDX55-208ENST00000541259 B4GAT1O43505 415 aa9.03□□□□□ -0.96
DDX55-208ENST00000541259 ITM2AO43736 263 aa9.03□□□□□ -0.96
DDX55-208ENST00000541259 SH3BP5O60239 455 aa9.03□□□□□ -0.96
DDX55-208ENST00000541259 CCNT2O60583 730 aaKnown RBP9.03□□□□□ -0.96
DDX55-208ENST00000541259 STK16O75716 305 aa9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms