RNA–Protein interactions for RNA: ENST00000540960.1

CHD4-208, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 5

Gene CHD4, Length 892 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-208ENST00000540960 CPED1A4D0V7 1026 aa8.16□□□□□ -1.1
CHD4-208ENST00000540960 C10orf142B7Z368 130 aa8.16□□□□□ -1.1
CHD4-208ENST00000540960 PLD2O14939 933 aa8.16□□□□□ -1.1
CHD4-208ENST00000540960 HGSO14964 777 aaPredicted RBP8.16□□□□□ -1.1
CHD4-208ENST00000540960 AURKAO14965 403 aa8.16□□□□□ -1.1
CHD4-208ENST00000540960 BUD23O43709 281 aaKnown RBP8.16□□□□□ -1.1
CHD4-208ENST00000540960 BNIP3LO60238 219 aa8.16□□□□□ -1.1
CHD4-208ENST00000540960 PRAMEF10O60809 474 aa8.16□□□□□ -1.1
CHD4-208ENST00000540960 GPC4O75487 556 aa8.16□□□□□ -1.1
CHD4-208ENST00000540960 PIGNO95427 931 aa8.16□□□□□ -1.1
CHD4-208ENST00000540960 CLDN7O95471 211 aa8.16□□□□□ -1.1
CHD4-208ENST00000540960 C8GP07360 202 aa8.16□□□□□ -1.1
CHD4-208ENST00000540960 HIST1H2AGP0C0S8 130 aaPredicted RBP8.16□□□□□ -1.1
CHD4-208ENST00000540960 THRAP10827 490 aa8.16□□□□□ -1.1
CHD4-208ENST00000540960 BPIP17213 487 aa8.16□□□□□ -1.1
CHD4-208ENST00000540960 HIST1H2ADP20671 130 aa8.16□□□□□ -1.1
CHD4-208ENST00000540960 ITGB7P26010 798 aa8.16□□□□□ -1.1
CHD4-208ENST00000540960 SERPINB3P29508 390 aa8.16□□□□□ -1.1
CHD4-208ENST00000540960 IDH3AP50213 366 aa8.16□□□□□ -1.1
CHD4-208ENST00000540960 PKNOX1P55347 436 aa8.16□□□□□ -1.1
CHD4-208ENST00000540960 LCP2Q13094 533 aa8.16□□□□□ -1.1
CHD4-208ENST00000540960 SP140Q13342 867 aa8.16□□□□□ -1.1
CHD4-208ENST00000540960 RIPK1Q13546 671 aa8.16□□□□□ -1.1
CHD4-208ENST00000540960 CAMK2GQ13555 558 aaPredicted RBP8.16□□□□□ -1.1
CHD4-208ENST00000540960 PERM1Q5SV97 790 aa8.16□□□□□ -1.1
CHD4-208ENST00000540960 PLEKHS1Q5SXH7 462 aa8.16□□□□□ -1.1
CHD4-208ENST00000540960 FAM182AQ5T1J6 154 aa8.16□□□□□ -1.1
CHD4-208ENST00000540960 LRRC66Q68CR7 880 aa8.16□□□□□ -1.1
CHD4-208ENST00000540960 TMEM215Q68D42 235 aa8.16□□□□□ -1.1
CHD4-208ENST00000540960 GUSBP11Q6P575 273 aa8.16□□□□□ -1.1
CHD4-208ENST00000540960 ZNF549Q6P9A3 640 aa8.16□□□□□ -1.1
CHD4-208ENST00000540960 PAQR3Q6TCH7 311 aa8.16□□□□□ -1.1
CHD4-208ENST00000540960 FAM151BQ6UXP7 276 aa8.16□□□□□ -1.1
CHD4-208ENST00000540960 SERPINA13PQ6UXR4 307 aa8.16□□□□□ -1.1
CHD4-208ENST00000540960 DCHS2Q6V1P9 2916 aa8.16□□□□□ -1.1
CHD4-208ENST00000540960 FRMD7Q6ZUT3 714 aa8.16□□□□□ -1.1
CHD4-208ENST00000540960 Q6ZVU0 165 aa8.16□□□□□ -1.1
CHD4-208ENST00000540960 TMPRSS9Q7Z410 1059 aa8.16□□□□□ -1.1
CHD4-208ENST00000540960 B3GNT8Q7Z7M8 397 aa8.16□□□□□ -1.1
CHD4-208ENST00000540960 DTX1Q86Y01 620 aa8.16□□□□□ -1.1
CHD4-208ENST00000540960 PARP9Q8IXQ6 854 aa8.16□□□□□ -1.1
CHD4-208ENST00000540960 TMEM151AQ8N4L1 468 aa8.16□□□□□ -1.1
CHD4-208ENST00000540960 ZBTB2Q8N680 514 aa8.16□□□□□ -1.1
CHD4-208ENST00000540960 TNRC6AQ8NDV7 1962 aaKnown RBP8.16□□□□□ -1.1
CHD4-208ENST00000540960 CEP70Q8NHQ1 597 aa8.16□□□□□ -1.1
CHD4-208ENST00000540960 RFWD2Q8NHY2 731 aa8.16□□□□□ -1.1
CHD4-208ENST00000540960 ACTRT2Q8TDY3 377 aa8.16□□□□□ -1.1
CHD4-208ENST00000540960 MCUR1Q96AQ8 359 aa8.16□□□□□ -1.1
CHD4-208ENST00000540960 HIST1H2AHQ96KK5 128 aa8.16□□□□□ -1.1
CHD4-208ENST00000540960 MRGPRX3Q96LB0 322 aa8.16□□□□□ -1.1
CHD4-208ENST00000540960 RMDN2Q96LZ7 410 aa8.16□□□□□ -1.1
CHD4-208ENST00000540960 BIRC8Q96P09 236 aa8.16□□□□□ -1.1
CHD4-208ENST00000540960 VPS35Q96QK1 796 aa8.16□□□□□ -1.1
CHD4-208ENST00000540960 GPR21Q99679 349 aa8.16□□□□□ -1.1
CHD4-208ENST00000540960 HIST1H2AJQ99878 128 aa8.16□□□□□ -1.1
CHD4-208ENST00000540960 H2AFJQ9BTM1 129 aa8.16□□□□□ -1.1
CHD4-208ENST00000540960 C1QTNF3Q9BXJ4 246 aa8.16□□□□□ -1.1
CHD4-208ENST00000540960 C1orf21Q9H246 121 aa8.16□□□□□ -1.1
CHD4-208ENST00000540960 C12orf65Q9H3J6 166 aaKnown RBP8.16□□□□□ -1.1
CHD4-208ENST00000540960 ALG9Q9H6U8 611 aa8.16□□□□□ -1.1
CHD4-208ENST00000540960 KCNK13Q9HB14 408 aa8.16□□□□□ -1.1
CHD4-208ENST00000540960 RDH14Q9HBH5 336 aa8.16□□□□□ -1.1
CHD4-208ENST00000540960 SGK2Q9HBY8 427 aa8.16□□□□□ -1.1
CHD4-208ENST00000540960 PREBQ9HCU5 417 aa8.16□□□□□ -1.1
CHD4-208ENST00000540960 BPIFA1Q9NP55 256 aa8.16□□□□□ -1.1
CHD4-208ENST00000540960 TCF7L2Q9NQB0 619 aa8.16□□□□□ -1.1
CHD4-208ENST00000540960 FOXJ2Q9P0K8 574 aa8.16□□□□□ -1.1
CHD4-208ENST00000540960 NYNRINQ9P2P1 1898 aaKnown RBP8.16□□□□□ -1.1
CHD4-208ENST00000540960 SLCO3A1Q9UIG8 710 aa8.16□□□□□ -1.1
CHD4-208ENST00000540960 PPM1HQ9ULR3 514 aa8.16□□□□□ -1.1
CHD4-208ENST00000540960 CLEC4EQ9ULY5 219 aa8.16□□□□□ -1.1
CHD4-208ENST00000540960 TP53TG5Q9Y2B4 290 aa8.16□□□□□ -1.1
CHD4-208ENST00000540960 CA5BQ9Y2D0 317 aa8.16□□□□□ -1.1
CHD4-208ENST00000540960 ACTL7AQ9Y615 435 aa8.16□□□□□ -1.1
CHD4-208ENST00000540960 ARHGEF17Q96PE2 2063 aaPredicted RBP8.15□□□□□ -1.1
CHD4-208ENST00000540960 FBN1P35555 2871 aaKnown RBP8.15□□□□□ -1.1
CHD4-208ENST00000540960 IGLV3-16A0A075B6K0 115 aa8.15□□□□□ -1.1
CHD4-208ENST00000540960 OR51F1A6NGY5 319 aa8.15□□□□□ -1.1
CHD4-208ENST00000540960 C16orf96A6NNT2 1141 aa8.15□□□□□ -1.1
CHD4-208ENST00000540960 A8MT66 165 aa8.15□□□□□ -1.1
CHD4-208ENST00000540960 SUPT3HB4E1H0 165 aa8.15□□□□□ -1.1
CHD4-208ENST00000540960 BTN3A1O00481 513 aa8.15□□□□□ -1.1
CHD4-208ENST00000540960 GYG2O15488 501 aa8.15□□□□□ -1.1
CHD4-208ENST00000540960 KLK8O60259 260 aa8.15□□□□□ -1.1
CHD4-208ENST00000540960 KATNA1O75449 491 aa8.15□□□□□ -1.1
CHD4-208ENST00000540960 SUPT3HO75486 399 aa8.15□□□□□ -1.1
CHD4-208ENST00000540960 LEFTY1O75610 366 aa8.15□□□□□ -1.1
CHD4-208ENST00000540960 SUPT7LO94864 414 aa8.15□□□□□ -1.1
CHD4-208ENST00000540960 C8BP07358 591 aa8.15□□□□□ -1.1
CHD4-208ENST00000540960 ALPIP09923 528 aa8.15□□□□□ -1.1
CHD4-208ENST00000540960 MPC1LP0DKB6 136 aa8.15□□□□□ -1.1
CHD4-208ENST00000540960 C7P10643 843 aa8.15□□□□□ -1.1
CHD4-208ENST00000540960 KITP10721 976 aa8.15□□□□□ -1.1
CHD4-208ENST00000540960 NQO1P15559 274 aaKnown RBP8.15□□□□□ -1.1
CHD4-208ENST00000540960 MSH3P20585 1137 aa8.15□□□□□ -1.1
CHD4-208ENST00000540960 CTSOP43234 321 aaPredicted RBP8.15□□□□□ -1.1
CHD4-208ENST00000540960 STK19P49842 368 aaPredicted RBP8.15□□□□□ -1.1
CHD4-208ENST00000540960 LIG3P49916 1009 aa8.15□□□□□ -1.1
CHD4-208ENST00000540960 HNMTP50135 292 aa8.15□□□□□ -1.1
CHD4-208ENST00000540960 CDKL1Q00532 357 aa8.15□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms