RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 SLC25A23Q9BV35 468 aa2.51□□□□□ -2.01
CD44-238ENST00000534296 FAM49AQ9H0Q0 323 aaPredicted RBP2.51□□□□□ -2.01
CD44-238ENST00000534296 DPAGT1Q9H3H5 408 aa2.51□□□□□ -2.01
CD44-238ENST00000534296 SLA2Q9H6Q3 261 aa2.51□□□□□ -2.01
CD44-238ENST00000534296 XAB2Q9HCS7 855 aaKnown RBP2.51□□□□□ -2.01
CD44-238ENST00000534296 PPANQ9NQ55 473 aaKnown RBP2.51□□□□□ -2.01
CD44-238ENST00000534296 GKN1Q9NS71 199 aa2.51□□□□□ -2.01
CD44-238ENST00000534296 ATAD3AQ9NVI7 634 aa2.51□□□□□ -2.01
CD44-238ENST00000534296 BARHL2Q9NY43 387 aa2.51□□□□□ -2.01
CD44-238ENST00000534296 SPHK1Q9NYA1 384 aa2.51□□□□□ -2.01
CD44-238ENST00000534296 NPAP1Q9NZP6 1156 aa2.51□□□□□ -2.01
CD44-238ENST00000534296 WBP11Q9Y2W2 641 aaKnown RBP2.51□□□□□ -2.01
CD44-238ENST00000534296 CCL27Q9Y4X3 112 aa2.51□□□□□ -2.01
CD44-238ENST00000534296 RNF215Q9Y6U7 377 aa2.51□□□□□ -2.01
CD44-238ENST00000534296 ANKRD61A6NGH8 418 aa2.5□□□□□ -2.01
CD44-238ENST00000534296 A8MXE2 369 aa2.5□□□□□ -2.01
CD44-238ENST00000534296 UBE2CO00762 179 aa2.5□□□□□ -2.01
CD44-238ENST00000534296 ZNF197O14709 1029 aa2.5□□□□□ -2.01
CD44-238ENST00000534296 TO15178 435 aa2.5□□□□□ -2.01
CD44-238ENST00000534296 SLC22A2O15244 555 aa2.5□□□□□ -2.01
CD44-238ENST00000534296 RPS6KA5O75582 802 aa2.5□□□□□ -2.01
CD44-238ENST00000534296 CDC123O75794 336 aaPredicted RBP2.5□□□□□ -2.01
CD44-238ENST00000534296 AP2A2O94973 939 aa2.5□□□□□ -2.01
CD44-238ENST00000534296 MOCS3O95396 460 aa2.5□□□□□ -2.01
CD44-238ENST00000534296 HSPA4LO95757 839 aa2.5□□□□□ -2.01
CD44-238ENST00000534296 ACP2P11117 423 aa2.5□□□□□ -2.01
CD44-238ENST00000534296 SCG2P13521 617 aa2.5□□□□□ -2.01
CD44-238ENST00000534296 EFNA1P20827 205 aaPredicted RBP2.5□□□□□ -2.01
CD44-238ENST00000534296 CA6P23280 308 aa2.5□□□□□ -2.01
CD44-238ENST00000534296 MAGEA11P43364 429 aa2.5□□□□□ -2.01
CD44-238ENST00000534296 CLK1P49759 484 aaKnown RBP2.5□□□□□ -2.01
CD44-238ENST00000534296 RBPJQ06330 500 aa2.5□□□□□ -2.01
CD44-238ENST00000534296 PRKAA1Q13131 559 aa2.5□□□□□ -2.01
CD44-238ENST00000534296 HNRNPDQ14103 355 aaKnown RBP2.5□□□□□ -2.01
CD44-238ENST00000534296 TCTE1Q5JU00 501 aa2.5□□□□□ -2.01
CD44-238ENST00000534296 RNASEH2BQ5TBB1 312 aaKnown RBP2.5□□□□□ -2.01
CD44-238ENST00000534296 MFSD12Q6NUT3 480 aa2.5□□□□□ -2.01
CD44-238ENST00000534296 RPUSD3Q6P087 351 aaKnown RBP2.5□□□□□ -2.01
CD44-238ENST00000534296 ENPP7Q6UWV6 458 aa2.5□□□□□ -2.01
CD44-238ENST00000534296 METTL7BQ6UX53 244 aa2.5□□□□□ -2.01
CD44-238ENST00000534296 PPP1R21Q6ZMI0 780 aa2.5□□□□□ -2.01
CD44-238ENST00000534296 SLC16A9Q7RTY1 509 aa2.5□□□□□ -2.01
CD44-238ENST00000534296 PLPPR4Q7Z2D5 763 aa2.5□□□□□ -2.01
CD44-238ENST00000534296 NOTCH2NLQ7Z3S9 236 aa2.5□□□□□ -2.01
CD44-238ENST00000534296 C4orf19Q8IY42 314 aa2.5□□□□□ -2.01
CD44-238ENST00000534296 LYG1Q8N1E2 194 aa2.5□□□□□ -2.01
CD44-238ENST00000534296 NKAIN3Q8N8D7 197 aa2.5□□□□□ -2.01
CD44-238ENST00000534296 TMEM178AQ8NBL3 297 aa2.5□□□□□ -2.01
CD44-238ENST00000534296 OR5M8Q8NGP6 311 aa2.5□□□□□ -2.01
CD44-238ENST00000534296 OR2T6Q8NHC8 308 aa2.5□□□□□ -2.01
CD44-238ENST00000534296 RNF128Q8TEB7 428 aa2.5□□□□□ -2.01
CD44-238ENST00000534296 SSMEM1Q8WWF3 244 aa2.5□□□□□ -2.01
CD44-238ENST00000534296 ZNF599Q96NL3 588 aa2.5□□□□□ -2.01
CD44-238ENST00000534296 CITED2Q99967 270 aaPredicted RBP2.5□□□□□ -2.01
CD44-238ENST00000534296 SYT15Q9BQS2 421 aa2.5□□□□□ -2.01
CD44-238ENST00000534296 NAA11Q9BSU3 229 aaPredicted RBP2.5□□□□□ -2.01
CD44-238ENST00000534296 EDEM3Q9BZQ6 932 aa2.5□□□□□ -2.01
CD44-238ENST00000534296 TRIM15Q9C019 465 aa2.5□□□□□ -2.01
CD44-238ENST00000534296 ACKR4Q9NPB9 350 aa2.5□□□□□ -2.01
CD44-238ENST00000534296 OLAHQ9NV23 265 aa2.5□□□□□ -2.01
CD44-238ENST00000534296 KLHL8Q9P2G9 620 aaPredicted RBP2.5□□□□□ -2.01
CD44-238ENST00000534296 TXNDC16Q9P2K2 825 aa2.5□□□□□ -2.01
CD44-238ENST00000534296 RHCGQ9UBD6 479 aa2.5□□□□□ -2.01
CD44-238ENST00000534296 CRNNQ9UBG3 495 aaPredicted RBP2.5□□□□□ -2.01
CD44-238ENST00000534296 CACNG4Q9UBN1 327 aa2.5□□□□□ -2.01
CD44-238ENST00000534296 ZDHHC2Q9UIJ5 367 aa2.5□□□□□ -2.01
CD44-238ENST00000534296 TUBE1Q9UJT0 475 aa2.5□□□□□ -2.01
CD44-238ENST00000534296 EXOGQ9Y2C4 368 aaKnown RBP2.5□□□□□ -2.01
CD44-238ENST00000534296 SNED1Q8TER0 1413 aa2.5□□□□□ -2.01
CD44-238ENST00000534296 IGLV7-46A0A075B6I9 117 aa2.49□□□□□ -2.01
CD44-238ENST00000534296 IGLV9-49A0A0B4J1Y8 123 aa2.49□□□□□ -2.01
CD44-238ENST00000534296 A0A1W2PRQ8 180 aa2.49□□□□□ -2.01
CD44-238ENST00000534296 URADA6NGE7 173 aa2.49□□□□□ -2.01
CD44-238ENST00000534296 ERI2A8K979 691 aaKnown RBP2.49□□□□□ -2.01
CD44-238ENST00000534296 GAPDHSO14556 408 aaPredicted RBP2.49□□□□□ -2.01
CD44-238ENST00000534296 DCXO43602 365 aa2.49□□□□□ -2.01
CD44-238ENST00000534296 RNASEH1O60930 286 aaKnown RBP2.49□□□□□ -2.01
CD44-238ENST00000534296 TBX10O75333 385 aa2.49□□□□□ -2.01
CD44-238ENST00000534296 PENKP01210 267 aaPredicted RBP2.49□□□□□ -2.01
CD44-238ENST00000534296 RAF1P04049 648 aa2.49□□□□□ -2.01
CD44-238ENST00000534296 RPN1P04843 607 aaKnown RBP2.49□□□□□ -2.01
CD44-238ENST00000534296 VIMP08670 466 aaKnown RBP2.49□□□□□ -2.01
CD44-238ENST00000534296 RAB40ALP0C0E4 278 aa2.49□□□□□ -2.01
CD44-238ENST00000534296 SAGP10523 405 aaPredicted RBP2.49□□□□□ -2.01
CD44-238ENST00000534296 IRF2P14316 349 aa2.49□□□□□ -2.01
CD44-238ENST00000534296 DPEP1P16444 411 aa2.49□□□□□ -2.01
CD44-238ENST00000534296 ACHEP22303 614 aa2.49□□□□□ -2.01
CD44-238ENST00000534296 SOAT1P35610 550 aa2.49□□□□□ -2.01
CD44-238ENST00000534296 CCR10P46092 362 aa2.49□□□□□ -2.01
CD44-238ENST00000534296 RPL21P46778 160 aaKnown RBP2.49□□□□□ -2.01
CD44-238ENST00000534296 SLC6A12P48065 614 aa2.49□□□□□ -2.01
CD44-238ENST00000534296 ZNF41P51814 821 aaPredicted RBP2.49□□□□□ -2.01
CD44-238ENST00000534296 POU5F1Q01860 360 aaKnown RBP2.49□□□□□ -2.01
CD44-238ENST00000534296 PPARDQ03181 441 aa2.49□□□□□ -2.01
CD44-238ENST00000534296 TFCP2Q12800 502 aa2.49□□□□□ -2.01
CD44-238ENST00000534296 CUL3Q13618 768 aa2.49□□□□□ -2.01
CD44-238ENST00000534296 TMEM187Q14656 261 aa2.49□□□□□ -2.01
CD44-238ENST00000534296 ODF4Q2M2E3 257 aa2.49□□□□□ -2.01
CD44-238ENST00000534296 LRRC73Q5JTD7 316 aa2.49□□□□□ -2.01
CD44-238ENST00000534296 WLSQ5T9L3 541 aa2.49□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms