RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 MCOLN3Q8TDD5 553 aa20.68■□□□□ 0.9
VPS28-205ENST00000526204 CSGALNACT1Q8TDX6 532 aa20.68■□□□□ 0.9
VPS28-205ENST00000526204 TSSK3Q96PN8 268 aa20.68■□□□□ 0.9
VPS28-205ENST00000526204 CEP44Q9C0F1 390 aa20.68■□□□□ 0.9
VPS28-205ENST00000526204 FANCEQ9HB96 536 aa20.68■□□□□ 0.9
VPS28-205ENST00000526204 PREBQ9HCU5 417 aa20.68■□□□□ 0.9
VPS28-205ENST00000526204 DNAJC11Q9NVH1 559 aa20.68■□□□□ 0.9
VPS28-205ENST00000526204 PCDHGA8Q9Y5G5 932 aa20.68■□□□□ 0.9
VPS28-205ENST00000526204 GFYI3L273 518 aa20.67■□□□□ 0.9
VPS28-205ENST00000526204 B4GAT1O43505 415 aa20.67■□□□□ 0.9
VPS28-205ENST00000526204 BNIP3LO60238 219 aa20.67■□□□□ 0.9
VPS28-205ENST00000526204 E2F6O75461 281 aa20.67■□□□□ 0.9
VPS28-205ENST00000526204 SDC1P18827 310 aa20.67■□□□□ 0.9
VPS28-205ENST00000526204 GSTM2P28161 218 aa20.67■□□□□ 0.9
VPS28-205ENST00000526204 PTPN6P29350 595 aa20.67■□□□□ 0.9
VPS28-205ENST00000526204 POLR2IP36954 125 aaKnown RBP20.67■□□□□ 0.9
VPS28-205ENST00000526204 DCTP40126 519 aa20.67■□□□□ 0.9
VPS28-205ENST00000526204 NEK2P51955 445 aa20.67■□□□□ 0.9
VPS28-205ENST00000526204 POLR2LP62875 67 aaKnown RBP20.67■□□□□ 0.9
VPS28-205ENST00000526204 CREMQ03060 361 aa20.67■□□□□ 0.9
VPS28-205ENST00000526204 ZNF33BQ06732 778 aa20.67■□□□□ 0.9
VPS28-205ENST00000526204 VAC14Q08AM6 782 aa20.67■□□□□ 0.9
VPS28-205ENST00000526204 LAPTM5Q13571 262 aa20.67■□□□□ 0.9
VPS28-205ENST00000526204 DPY19L1Q2PZI1 675 aa20.67■□□□□ 0.9
VPS28-205ENST00000526204 PGS1Q32NB8 556 aa20.67■□□□□ 0.9
VPS28-205ENST00000526204 CARD16Q5EG05 197 aa20.67■□□□□ 0.9
VPS28-205ENST00000526204 C6orf141Q5SZD1 244 aa20.67■□□□□ 0.9
VPS28-205ENST00000526204 R3HCC1LQ7Z5L2 792 aaKnown RBP20.67■□□□□ 0.9
VPS28-205ENST00000526204 GPR65Q8IYL9 337 aa20.67■□□□□ 0.9
VPS28-205ENST00000526204 ELMOD1Q8N336 334 aa20.67■□□□□ 0.9
VPS28-205ENST00000526204 PHF12Q96QT6 1004 aa20.67■□□□□ 0.9
VPS28-205ENST00000526204 HHIPQ96QV1 700 aa20.67■□□□□ 0.9
VPS28-205ENST00000526204 AMBRA1Q9C0C7 1298 aa20.67■□□□□ 0.9
VPS28-205ENST00000526204 ABCG8Q9H221 673 aa20.67■□□□□ 0.9
VPS28-205ENST00000526204 BRD9Q9H8M2 597 aa20.67■□□□□ 0.9
VPS28-205ENST00000526204 ORC6Q9Y5N6 252 aa20.67■□□□□ 0.9
VPS28-205ENST00000526204 GMEB1Q9Y692 573 aa20.67■□□□□ 0.9
VPS28-205ENST00000526204 RFXANKO14593 260 aa20.66■□□□□ 0.9
VPS28-205ENST00000526204 NOBOXO60393 691 aa20.66■□□□□ 0.9
VPS28-205ENST00000526204 RAD23AP54725 363 aa20.66■□□□□ 0.9
VPS28-205ENST00000526204 KCNAB2Q13303 367 aa20.66■□□□□ 0.9
VPS28-205ENST00000526204 ZXDCQ2QGD7 858 aaPredicted RBP20.66■□□□□ 0.9
VPS28-205ENST00000526204 ZC3H12BQ5HYM0 836 aaKnown RBP20.66■□□□□ 0.9
VPS28-205ENST00000526204 FRG2Q64ET8 278 aa20.66■□□□□ 0.9
VPS28-205ENST00000526204 CMTM8Q8IZV2 173 aa20.66■□□□□ 0.9
VPS28-205ENST00000526204 FRG2BQ96QU4 278 aa20.66■□□□□ 0.9
VPS28-205ENST00000526204 ZDHHC6Q9H6R6 413 aa20.66■□□□□ 0.9
VPS28-205ENST00000526204 GALNT8Q9NY28 637 aa20.66■□□□□ 0.9
VPS28-205ENST00000526204 SLC25A13Q9UJS0 675 aa20.66■□□□□ 0.9
VPS28-205ENST00000526204 UTS2RQ9UKP6 389 aa20.66■□□□□ 0.9
VPS28-205ENST00000526204 SAMD4AQ9UPU9 718 aaKnown RBP20.66■□□□□ 0.9
VPS28-205ENST00000526204 EVPLLA8MZ36 301 aa20.66■□□□□ 0.9
VPS28-205ENST00000526204 LEFTY2O00292 366 aa20.66■□□□□ 0.9
VPS28-205ENST00000526204 GRM6O15303 877 aa20.66■□□□□ 0.9
VPS28-205ENST00000526204 CCNDBP1O95273 360 aa20.66■□□□□ 0.9
VPS28-205ENST00000526204 C1SP09871 688 aa20.66■□□□□ 0.9
VPS28-205ENST00000526204 AMD1P17707 334 aa20.66■□□□□ 0.9
VPS28-205ENST00000526204 PRPS1L1P21108 318 aa20.66■□□□□ 0.9
VPS28-205ENST00000526204 HLA-FP30511 346 aa20.66■□□□□ 0.9
VPS28-205ENST00000526204 TRPC1P48995 793 aa20.66■□□□□ 0.9
VPS28-205ENST00000526204 IL18R1Q13478 541 aa20.66■□□□□ 0.9
VPS28-205ENST00000526204 NEK5Q6P3R8 708 aa20.66■□□□□ 0.9
VPS28-205ENST00000526204 NEK10Q6ZWH5 1172 aa20.66■□□□□ 0.9
VPS28-205ENST00000526204 CHDHQ8NE62 594 aaPredicted RBP20.66■□□□□ 0.9
VPS28-205ENST00000526204 INPP5KQ9BT40 448 aa20.66■□□□□ 0.9
VPS28-205ENST00000526204 PPT2Q9UMR5 302 aa20.66■□□□□ 0.9
VPS28-205ENST00000526204 KIAA1671Q9BY89 1806 aa20.65■□□□□ 0.9
VPS28-205ENST00000526204 A0A1W2PPW3 197 aa20.65■□□□□ 0.9
VPS28-205ENST00000526204 PFKLP17858 780 aa20.65■□□□□ 0.9
VPS28-205ENST00000526204 CCNA2P20248 432 aa20.65■□□□□ 0.9
VPS28-205ENST00000526204 TACR1P25103 407 aa20.65■□□□□ 0.9
VPS28-205ENST00000526204 GALK1P51570 392 aa20.65■□□□□ 0.9
VPS28-205ENST00000526204 ATN1P54259 1190 aaPredicted RBP20.65■□□□□ 0.9
VPS28-205ENST00000526204 ABRQ12979 859 aa20.65■□□□□ 0.9
VPS28-205ENST00000526204 XAF1Q6GPH4 301 aa20.65■□□□□ 0.9
VPS28-205ENST00000526204 DPY19L3Q6ZPD9 716 aa20.65■□□□□ 0.9
VPS28-205ENST00000526204 RFLNAQ6ZTI6 216 aa20.65■□□□□ 0.9
VPS28-205ENST00000526204 SERPINA11Q86U17 422 aa20.65■□□□□ 0.9
VPS28-205ENST00000526204 TMC8Q8IU68 726 aa20.65■□□□□ 0.9
VPS28-205ENST00000526204 HS3ST5Q8IZT8 346 aa20.65■□□□□ 0.9
VPS28-205ENST00000526204 ARL10Q8N8L6 244 aa20.65■□□□□ 0.9
VPS28-205ENST00000526204 TBC1D20Q96BZ9 403 aa20.65■□□□□ 0.9
VPS28-205ENST00000526204 B4GALT6Q9UBX8 382 aa20.65■□□□□ 0.9
VPS28-205ENST00000526204 SLC22A14Q9Y267 594 aa20.65■□□□□ 0.9
VPS28-205ENST00000526204 MICAL3Q7RTP6 2002 aa20.65■□□□□ 0.9
VPS28-205ENST00000526204 COL4A6Q14031 1691 aa20.65■□□□□ 0.9
VPS28-205ENST00000526204 LOC100130705A0A1B0GUX0 176 aa20.65■□□□□ 0.9
VPS28-205ENST00000526204 CFAP99D6REC4 459 aa20.65■□□□□ 0.9
VPS28-205ENST00000526204 HS6ST1O60243 411 aa20.65■□□□□ 0.9
VPS28-205ENST00000526204 PRMT3O60678 531 aa20.65■□□□□ 0.9
VPS28-205ENST00000526204 UGDHO60701 494 aa20.65■□□□□ 0.9
VPS28-205ENST00000526204 LRG1P02750 347 aa20.65■□□□□ 0.9
VPS28-205ENST00000526204 UGT2B4P06133 528 aa20.65■□□□□ 0.9
VPS28-205ENST00000526204 GSNP06396 782 aa20.65■□□□□ 0.9
VPS28-205ENST00000526204 JUPP14923 745 aa20.65■□□□□ 0.9
VPS28-205ENST00000526204 PIGAP37287 484 aa20.65■□□□□ 0.9
VPS28-205ENST00000526204 MAGEA2P43356 314 aa20.65■□□□□ 0.9
VPS28-205ENST00000526204 KIR3DL1P43629 444 aa20.65■□□□□ 0.9
VPS28-205ENST00000526204 ENTPD1P49961 510 aa20.65■□□□□ 0.9
VPS28-205ENST00000526204 KCNC3Q14003 757 aa20.65■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms