RNA–Protein interactions for RNA: ENST00000523636.5

PABPC1-223, Transcript of poly(A) binding protein cytoplasmic 1, human

TSL 5

Gene PABPC1, Length 818 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PABPC1-223	ENST00000523636	DYNC2H1	Q8NCM8	4307 aa	Known RBP	5.04	□□□□□ -1.6
PABPC1-223	ENST00000523636	ZNF559-ZNF177	A0A0A6YYI6	481 aa	Predicted RBP	5.04	□□□□□ -1.6
PABPC1-223	ENST00000523636	TRAV34	A0A0B4J273	112 aa		5.04	□□□□□ -1.6
PABPC1-223	ENST00000523636		A0A1W2PQ09	198 aa		5.04	□□□□□ -1.6
PABPC1-223	ENST00000523636	EME2	A4GXA9	379 aa	Predicted RBP	5.04	□□□□□ -1.6
PABPC1-223	ENST00000523636	GOLGA6L9	A6NEM1	432 aa		5.04	□□□□□ -1.6
PABPC1-223	ENST00000523636	URAD	A6NGE7	173 aa		5.04	□□□□□ -1.6
PABPC1-223	ENST00000523636	CAPN14	A8MX76	684 aa		5.04	□□□□□ -1.6
PABPC1-223	ENST00000523636		K7ESM1	405 aa		5.04	□□□□□ -1.6
PABPC1-223	ENST00000523636	EBAG9	O00559	213 aa		5.04	□□□□□ -1.6
PABPC1-223	ENST00000523636	ZSCAN12	O43309	604 aa		5.04	□□□□□ -1.6
PABPC1-223	ENST00000523636	CACNG3	O60359	315 aa		5.04	□□□□□ -1.6
PABPC1-223	ENST00000523636	PRAMEF4	O60810	478 aa		5.04	□□□□□ -1.6
PABPC1-223	ENST00000523636	CNTN5	O94779	1100 aa		5.04	□□□□□ -1.6
PABPC1-223	ENST00000523636	TOX4	O94842	621 aa		5.04	□□□□□ -1.6
PABPC1-223	ENST00000523636	F9	P00740	461 aa		5.04	□□□□□ -1.6
PABPC1-223	ENST00000523636	SERPINC1	P01008	464 aa		5.04	□□□□□ -1.6
PABPC1-223	ENST00000523636	S100A9	P06702	114 aa	Known RBP	5.04	□□□□□ -1.6
PABPC1-223	ENST00000523636	KCNE1	P15382	129 aa		5.04	□□□□□ -1.6
PABPC1-223	ENST00000523636	ZNF24	P17028	368 aa		5.04	□□□□□ -1.6
PABPC1-223	ENST00000523636	RPL9	P32969	192 aa	Known RBP	5.04	□□□□□ -1.6
PABPC1-223	ENST00000523636	RBMX	P38159	391 aa	Known RBP	5.04	□□□□□ -1.6
PABPC1-223	ENST00000523636	GARS	P41250	739 aa	Known RBP	5.04	□□□□□ -1.6
PABPC1-223	ENST00000523636	ZNF81	P51508	661 aa		5.04	□□□□□ -1.6
PABPC1-223	ENST00000523636	NDUFA8	P51970	172 aa		5.04	□□□□□ -1.6
PABPC1-223	ENST00000523636	AP3M2	P53677	418 aa		5.04	□□□□□ -1.6
PABPC1-223	ENST00000523636	GALC	P54803	685 aa		5.04	□□□□□ -1.6
PABPC1-223	ENST00000523636	SUMO3	P55854	103 aa	Predicted RBP	5.04	□□□□□ -1.6
PABPC1-223	ENST00000523636	BPIFB4	P59827	614 aa		5.04	□□□□□ -1.6
PABPC1-223	ENST00000523636	PPP2CB	P62714	309 aa		5.04	□□□□□ -1.6
PABPC1-223	ENST00000523636	PPP2CA	P67775	309 aa		5.04	□□□□□ -1.6
PABPC1-223	ENST00000523636	KHDRBS1	Q07666	443 aa	Known RBP eCLIP	5.04	□□□□□ -1.6
PABPC1-223	ENST00000523636	ZNF177	Q13360	481 aa	Predicted RBP	5.04	□□□□□ -1.6
PABPC1-223	ENST00000523636	RCN2	Q14257	317 aa		5.04	□□□□□ -1.6
PABPC1-223	ENST00000523636	PDIA5	Q14554	519 aa		5.04	□□□□□ -1.6
PABPC1-223	ENST00000523636	GPR68	Q15743	365 aa		5.04	□□□□□ -1.6
PABPC1-223	ENST00000523636	CDKN3	Q16667	212 aa		5.04	□□□□□ -1.6
PABPC1-223	ENST00000523636	RNF151	Q2KHN1	245 aa		5.04	□□□□□ -1.6
PABPC1-223	ENST00000523636	C14orf28	Q4W4Y0	310 aa		5.04	□□□□□ -1.6
PABPC1-223	ENST00000523636	TCTE1	Q5JU00	501 aa		5.04	□□□□□ -1.6
PABPC1-223	ENST00000523636	EFL1	Q7Z2Z2	1120 aa	Known RBP	5.04	□□□□□ -1.6
PABPC1-223	ENST00000523636	MIER3	Q7Z3K6	550 aa		5.04	□□□□□ -1.6
PABPC1-223	ENST00000523636	CAND1	Q86VP6	1230 aa	Known RBP	5.04	□□□□□ -1.6
PABPC1-223	ENST00000523636	BBS7	Q8IWZ6	715 aa		5.04	□□□□□ -1.6
PABPC1-223	ENST00000523636	RTL3	Q8N8U3	475 aa	Known RBP	5.04	□□□□□ -1.6
PABPC1-223	ENST00000523636	MLKL	Q8NB16	471 aa		5.04	□□□□□ -1.6
PABPC1-223	ENST00000523636	CACTIN	Q8WUQ7	758 aa	Known RBP	5.04	□□□□□ -1.6
PABPC1-223	ENST00000523636	ZNF480	Q8WV37	535 aa		5.04	□□□□□ -1.6
PABPC1-223	ENST00000523636	TEKT4	Q8WW24	435 aa		5.04	□□□□□ -1.6
PABPC1-223	ENST00000523636	NRG4	Q8WWG1	115 aa		5.04	□□□□□ -1.6
PABPC1-223	ENST00000523636	METTL21A	Q8WXB1	218 aa		5.04	□□□□□ -1.6
PABPC1-223	ENST00000523636	CFHR4	Q92496	578 aa		5.04	□□□□□ -1.6
PABPC1-223	ENST00000523636	KAT5	Q92993	513 aa		5.04	□□□□□ -1.6
PABPC1-223	ENST00000523636	HDAC10	Q969S8	669 aa		5.04	□□□□□ -1.6
PABPC1-223	ENST00000523636	RAB7B	Q96AH8	199 aa		5.04	□□□□□ -1.6
PABPC1-223	ENST00000523636	DHX58	Q96C10	678 aa		5.04	□□□□□ -1.6
PABPC1-223	ENST00000523636	ATP6V1G3	Q96LB4	118 aa		5.04	□□□□□ -1.6
PABPC1-223	ENST00000523636	FER1L6-AS2	Q96M78	137 aa		5.04	□□□□□ -1.6
PABPC1-223	ENST00000523636	ADAD1	Q96M93	576 aa	Known RBP	5.04	□□□□□ -1.6
PABPC1-223	ENST00000523636	CMTM3	Q96MX0	182 aa		5.04	□□□□□ -1.6
PABPC1-223	ENST00000523636	ABHD1	Q96SE0	405 aa		5.04	□□□□□ -1.6
PABPC1-223	ENST00000523636	PKP4	Q99569	1192 aa		5.04	□□□□□ -1.6
PABPC1-223	ENST00000523636	RIT2	Q99578	217 aa		5.04	□□□□□ -1.6
PABPC1-223	ENST00000523636	DDX50	Q9BQ39	737 aa	Known RBP	5.04	□□□□□ -1.6
PABPC1-223	ENST00000523636	REEP2	Q9BRK0	252 aa		5.04	□□□□□ -1.6
PABPC1-223	ENST00000523636	TWSG1	Q9GZX9	223 aa		5.04	□□□□□ -1.6
PABPC1-223	ENST00000523636	PABPC3	Q9H361	631 aa	Known RBP	5.04	□□□□□ -1.6
PABPC1-223	ENST00000523636	MRPL44	Q9H9J2	332 aa	Known RBP	5.04	□□□□□ -1.6
PABPC1-223	ENST00000523636	BCO1	Q9HAY6	547 aa		5.04	□□□□□ -1.6
PABPC1-223	ENST00000523636	EPB41L5	Q9HCM4	733 aa		5.04	□□□□□ -1.6
PABPC1-223	ENST00000523636	TMEM8A	Q9HCN3	771 aa		5.04	□□□□□ -1.6
PABPC1-223	ENST00000523636	SPHK2	Q9NRA0	654 aa		5.04	□□□□□ -1.6
PABPC1-223	ENST00000523636	POLE3	Q9NRF9	147 aa		5.04	□□□□□ -1.6
PABPC1-223	ENST00000523636	ETAA1	Q9NY74	926 aa		5.04	□□□□□ -1.6
PABPC1-223	ENST00000523636	SPATA7	Q9P0W8	599 aa		5.04	□□□□□ -1.6
PABPC1-223	ENST00000523636	CFAP97	Q9P2B7	532 aa		5.04	□□□□□ -1.6
PABPC1-223	ENST00000523636	MALT1	Q9UDY8	824 aa		5.04	□□□□□ -1.6
PABPC1-223	ENST00000523636	APPL1	Q9UKG1	709 aa		5.04	□□□□□ -1.6
PABPC1-223	ENST00000523636	TNFSF13B	Q9Y275	285 aa		5.04	□□□□□ -1.6
PABPC1-223	ENST00000523636	MED16	Q9Y2X0	877 aa		5.04	□□□□□ -1.6
PABPC1-223	ENST00000523636	LYVE1	Q9Y5Y7	322 aa		5.04	□□□□□ -1.6
PABPC1-223	ENST00000523636	NCOA6	Q14686	2063 aa	Predicted RBP	5.04	□□□□□ -1.6
PABPC1-223	ENST00000523636	CHD3	Q12873	2000 aa	Known RBP	5.03	□□□□□ -1.6
PABPC1-223	ENST00000523636	STMND1	H3BQB6	276 aa		5.03	□□□□□ -1.6
PABPC1-223	ENST00000523636	FCHO1	O14526	889 aa		5.03	□□□□□ -1.6
PABPC1-223	ENST00000523636	TP73	O15350	636 aa		5.03	□□□□□ -1.6
PABPC1-223	ENST00000523636	LRRTM2	O43300	516 aa		5.03	□□□□□ -1.6
PABPC1-223	ENST00000523636	CTIF	O43310	598 aa	Known RBP	5.03	□□□□□ -1.6
PABPC1-223	ENST00000523636	SMAD6	O43541	496 aa	Known RBP	5.03	□□□□□ -1.6
PABPC1-223	ENST00000523636	ACTL6B	O94805	426 aa		5.03	□□□□□ -1.6
PABPC1-223	ENST00000523636	POP4	O95707	220 aa	Known RBP	5.03	□□□□□ -1.6
PABPC1-223	ENST00000523636	GYPE	P15421	78 aa		5.03	□□□□□ -1.6
PABPC1-223	ENST00000523636	PFKFB1	P16118	471 aa		5.03	□□□□□ -1.6
PABPC1-223	ENST00000523636	ECHS1	P30084	290 aa		5.03	□□□□□ -1.6
PABPC1-223	ENST00000523636	S100A5	P33763	92 aa		5.03	□□□□□ -1.6
PABPC1-223	ENST00000523636	CRHR1	P34998	444 aa		5.03	□□□□□ -1.6
PABPC1-223	ENST00000523636	GGT5	P36269	586 aa		5.03	□□□□□ -1.6
PABPC1-223	ENST00000523636	HARS2	P49590	506 aa	Known RBP	5.03	□□□□□ -1.6
PABPC1-223	ENST00000523636	RWDD2B	P57060	319 aa		5.03	□□□□□ -1.6
PABPC1-223	ENST00000523636	RAC3	P60763	192 aa		5.03	□□□□□ -1.6

Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms