RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 COLGALT2Q8IYK4 626 aa11.43□□□□□ -0.58
SYNPO-204ENST00000519664 SLC43A3Q8NBI5 491 aa11.43□□□□□ -0.58
SYNPO-204ENST00000519664 OR4K1Q8NGD4 311 aa11.43□□□□□ -0.58
SYNPO-204ENST00000519664 RAD51AP1Q96B01 352 aa11.43□□□□□ -0.58
SYNPO-204ENST00000519664 MUS81Q96NY9 551 aa11.43□□□□□ -0.58
SYNPO-204ENST00000519664 ZNF607Q96SK3 696 aa11.43□□□□□ -0.58
SYNPO-204ENST00000519664 AIF1LQ9BQI0 150 aa11.43□□□□□ -0.58
SYNPO-204ENST00000519664 OR51B5Q9H339 312 aa11.43□□□□□ -0.58
SYNPO-204ENST00000519664 ZDHHC3Q9NYG2 299 aa11.43□□□□□ -0.58
SYNPO-204ENST00000519664 TBC1D14Q9P2M4 693 aa11.43□□□□□ -0.58
SYNPO-204ENST00000519664 CORO2BQ9UQ03 480 aa11.43□□□□□ -0.58
SYNPO-204ENST00000519664 A0A1B0GUL6 1792 aa11.43□□□□□ -0.58
SYNPO-204ENST00000519664 GUCY1B2O75343 617 aa11.43□□□□□ -0.58
SYNPO-204ENST00000519664 PAPSS2O95340 614 aaPredicted RBP11.43□□□□□ -0.58
SYNPO-204ENST00000519664 EPOP01588 193 aa11.43□□□□□ -0.58
SYNPO-204ENST00000519664 IGFBP4P22692 258 aa11.43□□□□□ -0.58
SYNPO-204ENST00000519664 PPIBP23284 216 aaKnown RBP11.43□□□□□ -0.58
SYNPO-204ENST00000519664 TUBA1BP68363 451 aa11.43□□□□□ -0.58
SYNPO-204ENST00000519664 FAM189BP81408 668 aa11.43□□□□□ -0.58
SYNPO-204ENST00000519664 CAP1Q01518 475 aa11.43□□□□□ -0.58
SYNPO-204ENST00000519664 CARD16Q5EG05 197 aa11.43□□□□□ -0.58
SYNPO-204ENST00000519664 GCNT6Q5T4J0 391 aa11.43□□□□□ -0.58
SYNPO-204ENST00000519664 TUBA1AQ71U36 451 aa11.43□□□□□ -0.58
SYNPO-204ENST00000519664 CACTIN-AS1Q8N1I8 211 aa11.43□□□□□ -0.58
SYNPO-204ENST00000519664 GLB1L3Q8NCI6 653 aaPredicted RBP11.43□□□□□ -0.58
SYNPO-204ENST00000519664 KRCC1Q9NPI7 259 aaPredicted RBP11.43□□□□□ -0.58
SYNPO-204ENST00000519664 B4GALT6Q9UBX8 382 aa11.43□□□□□ -0.58
SYNPO-204ENST00000519664 RUVBL1Q9Y265 456 aaKnown RBP11.43□□□□□ -0.58
SYNPO-204ENST00000519664 A0A1W2PQ45 241 aaPredicted RBP11.43□□□□□ -0.58
SYNPO-204ENST00000519664 A0A1W2PQY0 241 aa11.43□□□□□ -0.58
SYNPO-204ENST00000519664 TCRBV5S1A1TA0A578 114 aa11.43□□□□□ -0.58
SYNPO-204ENST00000519664 PCDH7O60245 1069 aa11.43□□□□□ -0.58
SYNPO-204ENST00000519664 NDUFS2O75306 463 aa11.43□□□□□ -0.58
SYNPO-204ENST00000519664 TNFRSF21O75509 655 aa11.43□□□□□ -0.58
SYNPO-204ENST00000519664 IFNW1P05000 195 aa11.43□□□□□ -0.58
SYNPO-204ENST00000519664 HTR6P50406 440 aa11.43□□□□□ -0.58
SYNPO-204ENST00000519664 GPR33Q49SQ1 333 aa11.43□□□□□ -0.58
SYNPO-204ENST00000519664 PM20D1Q6GTS8 502 aa11.43□□□□□ -0.58
SYNPO-204ENST00000519664 FNDC8Q8TC99 324 aa11.43□□□□□ -0.58
SYNPO-204ENST00000519664 SORCS1Q8WY21 1168 aa11.43□□□□□ -0.58
SYNPO-204ENST00000519664 SPACA7Q96KW9 195 aa11.43□□□□□ -0.58
SYNPO-204ENST00000519664 C1orf74Q96LT6 269 aa11.43□□□□□ -0.58
SYNPO-204ENST00000519664 KCNC2Q96PR1 638 aa11.43□□□□□ -0.58
SYNPO-204ENST00000519664 COPS4Q9BT78 406 aa11.43□□□□□ -0.58
SYNPO-204ENST00000519664 MUC13Q9H3R2 512 aa11.43□□□□□ -0.58
SYNPO-204ENST00000519664 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP11.43□□□□□ -0.58
SYNPO-204ENST00000519664 NCKAP1Q9Y2A7 1128 aa11.43□□□□□ -0.58
SYNPO-204ENST00000519664 GSTK1Q9Y2Q3 226 aa11.43□□□□□ -0.58
SYNPO-204ENST00000519664 SLC45A1Q9Y2W3 748 aa11.43□□□□□ -0.58
SYNPO-204ENST00000519664 SPO11Q9Y5K1 396 aa11.43□□□□□ -0.58
SYNPO-204ENST00000519664 SLX4Q8IY92 1834 aa11.43□□□□□ -0.58
SYNPO-204ENST00000519664 AP3D1O14617 1153 aa11.43□□□□□ -0.58
SYNPO-204ENST00000519664 CCNYL3P0C7X3 344 aa11.43□□□□□ -0.58
SYNPO-204ENST00000519664 HLA-EP13747 358 aa11.43□□□□□ -0.58
SYNPO-204ENST00000519664 IFNGR2P38484 337 aa11.43□□□□□ -0.58
SYNPO-204ENST00000519664 RPL3P39023 403 aaKnown RBP11.43□□□□□ -0.58
SYNPO-204ENST00000519664 SLBPQ14493 270 aaKnown RBP eCLIP11.43□□□□□ -0.58
SYNPO-204ENST00000519664 ZNF534Q76KX8 674 aa11.43□□□□□ -0.58
SYNPO-204ENST00000519664 CDH24Q86UP0 819 aa11.43□□□□□ -0.58
SYNPO-204ENST00000519664 MMAAQ8IVH4 418 aaKnown RBP11.43□□□□□ -0.58
SYNPO-204ENST00000519664 FAM20CQ8IXL6 584 aa11.43□□□□□ -0.58
SYNPO-204ENST00000519664 SLC22A17Q8WUG5 538 aa11.43□□□□□ -0.58
SYNPO-204ENST00000519664 KCNJ9Q92806 393 aa11.43□□□□□ -0.58
SYNPO-204ENST00000519664 PTERQ96BW5 349 aa11.43□□□□□ -0.58
SYNPO-204ENST00000519664 PKP4Q99569 1192 aa11.43□□□□□ -0.58
SYNPO-204ENST00000519664 BOCQ9BWV1 1114 aa11.43□□□□□ -0.58
SYNPO-204ENST00000519664 CCNB1IP1Q9NPC3 277 aa11.43□□□□□ -0.58
SYNPO-204ENST00000519664 MAT2BQ9NZL9 334 aa11.43□□□□□ -0.58
SYNPO-204ENST00000519664 COL2A1P02458 1487 aaPredicted RBP11.43□□□□□ -0.58
SYNPO-204ENST00000519664 A0A0J9YVX5 310 aa11.42□□□□□ -0.58
SYNPO-204ENST00000519664 MBLAC1A4D2B0 266 aaPredicted RBP11.42□□□□□ -0.58
SYNPO-204ENST00000519664 CENPXA8MT69 81 aa11.42□□□□□ -0.58
SYNPO-204ENST00000519664 M0QX08 132 aa11.42□□□□□ -0.58
SYNPO-204ENST00000519664 AIREO43918 545 aa11.42□□□□□ -0.58
SYNPO-204ENST00000519664 C8GP07360 202 aa11.42□□□□□ -0.58
SYNPO-204ENST00000519664 NR2F6P10588 404 aa11.42□□□□□ -0.58
SYNPO-204ENST00000519664 ELK4P28324 431 aa11.42□□□□□ -0.58
SYNPO-204ENST00000519664 PRDX3P30048 256 aaKnown RBP11.42□□□□□ -0.58
SYNPO-204ENST00000519664 TLX1P31314 330 aaPredicted RBP11.42□□□□□ -0.58
SYNPO-204ENST00000519664 BDKRB1P46663 353 aa11.42□□□□□ -0.58
SYNPO-204ENST00000519664 TAS2R41P59536 307 aa11.42□□□□□ -0.58
SYNPO-204ENST00000519664 DNAJB13P59910 316 aa11.42□□□□□ -0.58
SYNPO-204ENST00000519664 TAB1Q15750 504 aa11.42□□□□□ -0.58
SYNPO-204ENST00000519664 SNAPC1Q16533 368 aa11.42□□□□□ -0.58
SYNPO-204ENST00000519664 GPRC6AQ5T6X5 926 aa11.42□□□□□ -0.58
SYNPO-204ENST00000519664 KIAA0319Q5VV43 1072 aa11.42□□□□□ -0.58
SYNPO-204ENST00000519664 PEX5LQ8IYB4 626 aa11.42□□□□□ -0.58
SYNPO-204ENST00000519664 RGL4Q8IZJ4 473 aa11.42□□□□□ -0.58
SYNPO-204ENST00000519664 KBTBD8Q8NFY9 601 aa11.42□□□□□ -0.58
SYNPO-204ENST00000519664 KHSRPQ92945 711 aaKnown RBP eCLIP11.42□□□□□ -0.58
SYNPO-204ENST00000519664 NLE1Q9NVX2 485 aaPredicted RBP11.42□□□□□ -0.58
SYNPO-204ENST00000519664 SRCAPQ6ZRS2 3230 aa11.42□□□□□ -0.58
SYNPO-204ENST00000519664 LOC110117498-PIK3R3F6TDL0 507 aa11.42□□□□□ -0.58
SYNPO-204ENST00000519664 ZW10O43264 779 aa11.42□□□□□ -0.58
SYNPO-204ENST00000519664 XPNPEP2O43895 674 aa11.42□□□□□ -0.58
SYNPO-204ENST00000519664 OR10H2O60403 315 aa11.42□□□□□ -0.58
SYNPO-204ENST00000519664 UGT2B17O75795 530 aa11.42□□□□□ -0.58
SYNPO-204ENST00000519664 CDH1P12830 882 aa11.42□□□□□ -0.58
SYNPO-204ENST00000519664 ZNF182P17025 639 aaPredicted RBP11.42□□□□□ -0.58
SYNPO-204ENST00000519664 AMD1P17707 334 aa11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms