RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 ARSFP54793 590 aa14.46□□□□□ -0.09
NUP54-217ENST00000514987 SRSF11Q05519 484 aaKnown RBP14.46□□□□□ -0.09
NUP54-217ENST00000514987 ABHD18Q0P651 414 aa14.46□□□□□ -0.09
NUP54-217ENST00000514987 ZNF77Q15935 545 aa14.46□□□□□ -0.09
NUP54-217ENST00000514987 ZBED5Q49AG3 693 aa14.46□□□□□ -0.09
NUP54-217ENST00000514987 CCNYL2Q5T2Q4 361 aa14.46□□□□□ -0.09
NUP54-217ENST00000514987 HSD11B1LQ7Z5J1 315 aa14.46□□□□□ -0.09
NUP54-217ENST00000514987 GPR141Q7Z602 305 aa14.46□□□□□ -0.09
NUP54-217ENST00000514987 MSRB3Q8IXL7 192 aa14.46□□□□□ -0.09
NUP54-217ENST00000514987 NRSN1Q8IZ57 195 aa14.46□□□□□ -0.09
NUP54-217ENST00000514987 EID3Q8N140 333 aa14.46□□□□□ -0.09
NUP54-217ENST00000514987 KRTCAP2Q8N6L1 136 aa14.46□□□□□ -0.09
NUP54-217ENST00000514987 TERB1Q8NA31 727 aa14.46□□□□□ -0.09
NUP54-217ENST00000514987 WFIKKN2Q8TEU8 576 aa14.46□□□□□ -0.09
NUP54-217ENST00000514987 FRS2Q8WU20 508 aa14.46□□□□□ -0.09
NUP54-217ENST00000514987 BTN2A2Q8WVV5 523 aa14.46□□□□□ -0.09
NUP54-217ENST00000514987 GLMNQ92990 594 aa14.46□□□□□ -0.09
NUP54-217ENST00000514987 TMBIM1Q969X1 311 aa14.46□□□□□ -0.09
NUP54-217ENST00000514987 TRIM43Q96BQ3 446 aaPredicted RBP14.46□□□□□ -0.09
NUP54-217ENST00000514987 MTFMTQ96DP5 389 aaKnown RBP14.46□□□□□ -0.09
NUP54-217ENST00000514987 SLC47A1Q96FL8 570 aa14.46□□□□□ -0.09
NUP54-217ENST00000514987 AURKBQ96GD4 344 aaPredicted RBP14.46□□□□□ -0.09
NUP54-217ENST00000514987 CCDC138Q96M89 665 aa14.46□□□□□ -0.09
NUP54-217ENST00000514987 HHIPQ96QV1 700 aa14.46□□□□□ -0.09
NUP54-217ENST00000514987 P2RY13Q9BPV8 354 aa14.46□□□□□ -0.09
NUP54-217ENST00000514987 NTN4Q9HB63 628 aa14.46□□□□□ -0.09
NUP54-217ENST00000514987 TIMMDC1Q9NPL8 285 aa14.46□□□□□ -0.09
NUP54-217ENST00000514987 HCFC1R1Q9NWW0 138 aa14.46□□□□□ -0.09
NUP54-217ENST00000514987 SLC25A37Q9NYZ2 338 aa14.46□□□□□ -0.09
NUP54-217ENST00000514987 IL36AQ9UHA7 158 aa14.46□□□□□ -0.09
NUP54-217ENST00000514987 PLXNA2O75051 1894 aa14.46□□□□□ -0.1
NUP54-217ENST00000514987 G3V2T6 193 aa14.45□□□□□ -0.1
NUP54-217ENST00000514987 UPK1AO00322 258 aa14.45□□□□□ -0.1
NUP54-217ENST00000514987 XYLBO75191 536 aa14.45□□□□□ -0.1
NUP54-217ENST00000514987 MOSPD3O75425 235 aa14.45□□□□□ -0.1
NUP54-217ENST00000514987 CATP04040 527 aaKnown RBP14.45□□□□□ -0.1
NUP54-217ENST00000514987 RHOP08100 348 aa14.45□□□□□ -0.1
NUP54-217ENST00000514987 ACRP10323 421 aa14.45□□□□□ -0.1
NUP54-217ENST00000514987 THRBP10828 461 aa14.45□□□□□ -0.1
NUP54-217ENST00000514987 TIMP2P16035 220 aa14.45□□□□□ -0.1
NUP54-217ENST00000514987 SOX11P35716 441 aa14.45□□□□□ -0.1
NUP54-217ENST00000514987 HNF4AP41235 474 aa14.45□□□□□ -0.1
NUP54-217ENST00000514987 HALP42357 657 aa14.45□□□□□ -0.1
NUP54-217ENST00000514987 PNLIPRP1P54315 467 aa14.45□□□□□ -0.1
NUP54-217ENST00000514987 PLIN5Q00G26 463 aa14.45□□□□□ -0.1
NUP54-217ENST00000514987 CHIT1Q13231 466 aa14.45□□□□□ -0.1
NUP54-217ENST00000514987 LRRC26Q2I0M4 334 aa14.45□□□□□ -0.1
NUP54-217ENST00000514987 AAK1Q2M2I8 961 aa14.45□□□□□ -0.1
NUP54-217ENST00000514987 SYTL3Q4VX76 610 aa14.45□□□□□ -0.1
NUP54-217ENST00000514987 ZNF805Q5CZA5 627 aa14.45□□□□□ -0.1
NUP54-217ENST00000514987 LY6G5CQ5SRR4 150 aa14.45□□□□□ -0.1
NUP54-217ENST00000514987 HENMT1Q5T8I9 393 aaKnown RBP14.45□□□□□ -0.1
NUP54-217ENST00000514987 TTC23Q5W5X9 447 aa14.45□□□□□ -0.1
NUP54-217ENST00000514987 NEK5Q6P3R8 708 aa14.45□□□□□ -0.1
NUP54-217ENST00000514987 GPR180Q86V85 440 aa14.45□□□□□ -0.1
NUP54-217ENST00000514987 ERI1Q8IV48 349 aaKnown RBP14.45□□□□□ -0.1
NUP54-217ENST00000514987 VRK3Q8IV63 474 aa14.45□□□□□ -0.1
NUP54-217ENST00000514987 ADHFE1Q8IWW8 467 aa14.45□□□□□ -0.1
NUP54-217ENST00000514987 NELL1Q92832 810 aa14.45□□□□□ -0.1
NUP54-217ENST00000514987 REXO5Q96IC2 774 aaKnown RBP14.45□□□□□ -0.1
NUP54-217ENST00000514987 HIC2Q96JB3 615 aa14.45□□□□□ -0.1
NUP54-217ENST00000514987 BEGAINQ9BUH8 593 aa14.45□□□□□ -0.1
NUP54-217ENST00000514987 ABCG8Q9H221 673 aa14.45□□□□□ -0.1
NUP54-217ENST00000514987 PCDH12Q9NPG4 1184 aa14.45□□□□□ -0.1
NUP54-217ENST00000514987 SERHLQ9NQF3 203 aa14.45□□□□□ -0.1
NUP54-217ENST00000514987 DCAF13Q9NV06 445 aaKnown RBP14.45□□□□□ -0.1
NUP54-217ENST00000514987 USE1Q9NZ43 259 aa14.45□□□□□ -0.1
NUP54-217ENST00000514987 CD84Q9UIB8 345 aa14.45□□□□□ -0.1
NUP54-217ENST00000514987 SLC22A14Q9Y267 594 aa14.45□□□□□ -0.1
NUP54-217ENST00000514987 DLGAP4Q9Y2H0 992 aa14.45□□□□□ -0.1
NUP54-217ENST00000514987 PCDHB14Q9Y5E9 798 aa14.45□□□□□ -0.1
NUP54-217ENST00000514987 EVPLLA8MZ36 301 aa14.44□□□□□ -0.1
NUP54-217ENST00000514987 H3BSA7 217 aa14.44□□□□□ -0.1
NUP54-217ENST00000514987 PSMD11O00231 422 aa14.44□□□□□ -0.1
NUP54-217ENST00000514987 PER2O15055 1255 aa14.44□□□□□ -0.1
NUP54-217ENST00000514987 ATG13O75143 517 aa14.44□□□□□ -0.1
NUP54-217ENST00000514987 PSIP1O75475 530 aaKnown RBP14.44□□□□□ -0.1
NUP54-217ENST00000514987 LEFTY1O75610 366 aa14.44□□□□□ -0.1
NUP54-217ENST00000514987 CREG1O75629 220 aa14.44□□□□□ -0.1
NUP54-217ENST00000514987 MYO1DO94832 1006 aa14.44□□□□□ -0.1
NUP54-217ENST00000514987 ALPLP05186 524 aa14.44□□□□□ -0.1
NUP54-217ENST00000514987 AMD1P17707 334 aa14.44□□□□□ -0.1
NUP54-217ENST00000514987 NELFEP18615 380 aaKnown RBP14.44□□□□□ -0.1
NUP54-217ENST00000514987 SDC1P18827 310 aa14.44□□□□□ -0.1
NUP54-217ENST00000514987 ITGB8P26012 769 aa14.44□□□□□ -0.1
NUP54-217ENST00000514987 C21orf58P58505 322 aa14.44□□□□□ -0.1
NUP54-217ENST00000514987 PFN3P60673 137 aa14.44□□□□□ -0.1
NUP54-217ENST00000514987 IRF8Q02556 426 aa14.44□□□□□ -0.1
NUP54-217ENST00000514987 MTAPQ13126 283 aa14.44□□□□□ -0.1
NUP54-217ENST00000514987 PLA2G4EQ3MJ16 856 aa14.44□□□□□ -0.1
NUP54-217ENST00000514987 ARSIQ5FYB1 569 aa14.44□□□□□ -0.1
NUP54-217ENST00000514987 NOXRED1Q6NXP6 359 aa14.44□□□□□ -0.1
NUP54-217ENST00000514987 ERAP2Q6P179 960 aa14.44□□□□□ -0.1
NUP54-217ENST00000514987 LPCAT2Q7L5N7 544 aa14.44□□□□□ -0.1
NUP54-217ENST00000514987 OTOP2Q7RTS6 562 aa14.44□□□□□ -0.1
NUP54-217ENST00000514987 CYP2U1Q7Z449 544 aa14.44□□□□□ -0.1
NUP54-217ENST00000514987 STK32CQ86UX6 486 aa14.44□□□□□ -0.1
NUP54-217ENST00000514987 CLEC4FQ8N1N0 589 aa14.44□□□□□ -0.1
NUP54-217ENST00000514987 TMEM159Q96B96 161 aa14.44□□□□□ -0.1
NUP54-217ENST00000514987 TCEAL4Q96EI5 215 aa14.44□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms