RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 FRYQ5TBA9 3013 aa13.78□□□□□ -0.2
NUP54-216ENST00000514901 EXOC1LA0A1B0GW35 172 aa13.77□□□□□ -0.21
NUP54-216ENST00000514901 POC1B-GALNT4F8VUJ3 575 aa13.77□□□□□ -0.21
NUP54-216ENST00000514901 AGRPO00253 132 aa13.77□□□□□ -0.21
NUP54-216ENST00000514901 POLR1CO15160 346 aaPredicted RBP13.77□□□□□ -0.21
NUP54-216ENST00000514901 PRICKLE3O43900 615 aaPredicted RBP13.77□□□□□ -0.21
NUP54-216ENST00000514901 SLC16A8O95907 504 aa13.77□□□□□ -0.21
NUP54-216ENST00000514901 MSL3P1P0C860 447 aa13.77□□□□□ -0.21
NUP54-216ENST00000514901 CCDC166P0CW27 439 aa13.77□□□□□ -0.21
NUP54-216ENST00000514901 MYBL2P10244 700 aa13.77□□□□□ -0.21
NUP54-216ENST00000514901 PEBP1P30086 187 aaKnown RBP13.77□□□□□ -0.21
NUP54-216ENST00000514901 ETV5P41161 510 aa13.77□□□□□ -0.21
NUP54-216ENST00000514901 PGGT1BP53609 377 aa13.77□□□□□ -0.21
NUP54-216ENST00000514901 VSNL1P62760 191 aa13.77□□□□□ -0.21
NUP54-216ENST00000514901 SLC29A2Q14542 456 aa13.77□□□□□ -0.21
NUP54-216ENST00000514901 ZNF460Q14592 562 aa13.77□□□□□ -0.21
NUP54-216ENST00000514901 SF1Q15637 639 aaKnown RBP13.77□□□□□ -0.21
NUP54-216ENST00000514901 FREM2Q5SZK8 3169 aa13.77□□□□□ -0.21
NUP54-216ENST00000514901 UBAP2Q5T6F2 1119 aaKnown RBP13.77□□□□□ -0.21
NUP54-216ENST00000514901 MROH9Q5TGP6 573 aa13.77□□□□□ -0.21
NUP54-216ENST00000514901 FBXO38Q6PIJ6 1188 aa13.77□□□□□ -0.21
NUP54-216ENST00000514901 ADAMTSL2Q86TH1 951 aa13.77□□□□□ -0.21
NUP54-216ENST00000514901 GSPT2Q8IYD1 628 aaKnown RBP13.77□□□□□ -0.21
NUP54-216ENST00000514901 SYTL1Q8IYJ3 562 aa13.77□□□□□ -0.21
NUP54-216ENST00000514901 C2orf73Q8N5S3 287 aaPredicted RBP13.77□□□□□ -0.21
NUP54-216ENST00000514901 LMNTD1Q8N9Z9 388 aa13.77□□□□□ -0.21
NUP54-216ENST00000514901 OR8K5Q8NH50 307 aa13.77□□□□□ -0.21
NUP54-216ENST00000514901 MDM1Q8TC05 714 aa13.77□□□□□ -0.21
NUP54-216ENST00000514901 ZNF480Q8WV37 535 aa13.77□□□□□ -0.21
NUP54-216ENST00000514901 ANKRD49Q8WVL7 239 aa13.77□□□□□ -0.21
NUP54-216ENST00000514901 ATL1Q8WXF7 558 aa13.77□□□□□ -0.21
NUP54-216ENST00000514901 ZUFSPQ96AP4 578 aa13.77□□□□□ -0.21
NUP54-216ENST00000514901 TCTN2Q96GX1 697 aa13.77□□□□□ -0.21
NUP54-216ENST00000514901 UBXN10Q96LJ8 280 aa13.77□□□□□ -0.21
NUP54-216ENST00000514901 FCRL4Q96PJ5 515 aa13.77□□□□□ -0.21
NUP54-216ENST00000514901 TRAPPC9Q96Q05 1148 aa13.77□□□□□ -0.21
NUP54-216ENST00000514901 PCBD2Q9H0N5 130 aa13.77□□□□□ -0.21
NUP54-216ENST00000514901 FANCEQ9HB96 536 aa13.77□□□□□ -0.21
NUP54-216ENST00000514901 SOHLH2Q9NX45 425 aa13.77□□□□□ -0.21
NUP54-216ENST00000514901 CAMSAP3Q9P1Y5 1249 aaPredicted RBP13.77□□□□□ -0.21
NUP54-216ENST00000514901 CTNNAL1Q9UBT7 734 aa13.77□□□□□ -0.21
NUP54-216ENST00000514901 TLK1Q9UKI8 766 aa13.77□□□□□ -0.21
NUP54-216ENST00000514901 ADAMTS6Q9UKP5 1117 aa13.77□□□□□ -0.21
NUP54-216ENST00000514901 ACSL6Q9UKU0 697 aa13.77□□□□□ -0.21
NUP54-216ENST00000514901 ACOT9Q9Y305 439 aa13.77□□□□□ -0.21
NUP54-216ENST00000514901 SEC16AO15027 2179 aa13.76□□□□□ -0.21
NUP54-216ENST00000514901 A0A087X1B8 175 aa13.76□□□□□ -0.21
NUP54-216ENST00000514901 CCDC189A1A4V9 331 aa13.76□□□□□ -0.21
NUP54-216ENST00000514901 PMS2P1A4D2B8 440 aa13.76□□□□□ -0.21
NUP54-216ENST00000514901 TARM1B6A8C7 271 aa13.76□□□□□ -0.21
NUP54-216ENST00000514901 E7ENX8 843 aa13.76□□□□□ -0.21
NUP54-216ENST00000514901 PHGDHO43175 533 aaKnown RBP13.76□□□□□ -0.21
NUP54-216ENST00000514901 KRT37O76014 449 aa13.76□□□□□ -0.21
NUP54-216ENST00000514901 CCNDBP1O95273 360 aa13.76□□□□□ -0.21
NUP54-216ENST00000514901 ST6GAL1P15907 406 aa13.76□□□□□ -0.21
NUP54-216ENST00000514901 CCND1P24385 295 aa13.76□□□□□ -0.21
NUP54-216ENST00000514901 TYK2P29597 1187 aa13.76□□□□□ -0.21
NUP54-216ENST00000514901 SLC5A2P31639 672 aa13.76□□□□□ -0.21
NUP54-216ENST00000514901 RPA3P35244 121 aaPredicted RBP13.76□□□□□ -0.21
NUP54-216ENST00000514901 SERPINB8P50452 374 aa13.76□□□□□ -0.21
NUP54-216ENST00000514901 TAP2Q03519 686 aa13.76□□□□□ -0.21
NUP54-216ENST00000514901 FOXM1Q08050 763 aa13.76□□□□□ -0.21
NUP54-216ENST00000514901 ERCC6LQ2NKX8 1250 aa13.76□□□□□ -0.21
NUP54-216ENST00000514901 EMBQ6PCB8 327 aa13.76□□□□□ -0.21
NUP54-216ENST00000514901 TBC1D1Q86TI0 1168 aaPredicted RBP13.76□□□□□ -0.21
NUP54-216ENST00000514901 SPNS2Q8IVW8 549 aa13.76□□□□□ -0.21
NUP54-216ENST00000514901 C19orf47Q8N9M1 422 aaKnown RBP13.76□□□□□ -0.21
NUP54-216ENST00000514901 SNIP1Q8TAD8 396 aaKnown RBP13.76□□□□□ -0.21
NUP54-216ENST00000514901 UHMK1Q8TAS1 419 aaKnown RBP13.76□□□□□ -0.21
NUP54-216ENST00000514901 ZCCHC14Q8WYQ9 949 aaKnown RBP13.76□□□□□ -0.21
NUP54-216ENST00000514901 MTBPQ96DY7 904 aa13.76□□□□□ -0.21
NUP54-216ENST00000514901 PPM1MQ96MI6 270 aa13.76□□□□□ -0.21
NUP54-216ENST00000514901 OR6C1Q96RD1 312 aa13.76□□□□□ -0.21
NUP54-216ENST00000514901 PPCSQ9HAB8 311 aa13.76□□□□□ -0.21
NUP54-216ENST00000514901 NMRAL1Q9HBL8 299 aa13.76□□□□□ -0.21
NUP54-216ENST00000514901 ARL15Q9NXU5 204 aa13.76□□□□□ -0.21
NUP54-216ENST00000514901 UTP6Q9NYH9 597 aaKnown RBP13.76□□□□□ -0.21
NUP54-216ENST00000514901 STOX2Q9P2F5 926 aaPredicted RBP13.76□□□□□ -0.21
NUP54-216ENST00000514901 RARRES3Q9UL19 164 aa13.76□□□□□ -0.21
NUP54-216ENST00000514901 KLK4Q9Y5K2 254 aa13.76□□□□□ -0.21
NUP54-216ENST00000514901 ANKRD11Q6UB99 2663 aaPredicted RBP13.76□□□□□ -0.21
NUP54-216ENST00000514901 A0A1W2PPV9 198 aa13.75□□□□□ -0.21
NUP54-216ENST00000514901 HMX2A2RU54 273 aa13.75□□□□□ -0.21
NUP54-216ENST00000514901 C9orf172C9J069 976 aa13.75□□□□□ -0.21
NUP54-216ENST00000514901 PRAMEF10O60809 474 aa13.75□□□□□ -0.21
NUP54-216ENST00000514901 SNRPAP09012 282 aaKnown RBP13.75□□□□□ -0.21
NUP54-216ENST00000514901 SLC35E2BP0CK96 405 aa13.75□□□□□ -0.21
NUP54-216ENST00000514901 FGF5P12034 268 aa13.75□□□□□ -0.21
NUP54-216ENST00000514901 FOLR1P15328 257 aa13.75□□□□□ -0.21
NUP54-216ENST00000514901 IMPA1P29218 277 aa13.75□□□□□ -0.21
NUP54-216ENST00000514901 CMPK1P30085 196 aa13.75□□□□□ -0.21
NUP54-216ENST00000514901 PCBP4P57723 403 aaKnown RBP13.75□□□□□ -0.21
NUP54-216ENST00000514901 SH3BP2P78314 561 aa13.75□□□□□ -0.21
NUP54-216ENST00000514901 ABATP80404 500 aa13.75□□□□□ -0.21
NUP54-216ENST00000514901 CDKL1Q00532 357 aa13.75□□□□□ -0.21
NUP54-216ENST00000514901 TUBB3Q13509 450 aa13.75□□□□□ -0.21
NUP54-216ENST00000514901 FASTKQ14296 549 aaKnown RBP13.75□□□□□ -0.21
NUP54-216ENST00000514901 CSHL1Q14406 222 aa13.75□□□□□ -0.21
NUP54-216ENST00000514901 PHKG1Q16816 387 aa13.75□□□□□ -0.21
NUP54-216ENST00000514901 LARP7Q4G0J3 582 aaKnown RBP eCLIP13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms