RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 CREG1O75629 220 aa12.39□□□□□ -0.43
USP53-209ENST00000514665 EPOP01588 193 aa12.39□□□□□ -0.43
USP53-209ENST00000514665 NIPAL4Q0D2K0 466 aa12.39□□□□□ -0.43
USP53-209ENST00000514665 CARD16Q5EG05 197 aa12.39□□□□□ -0.43
USP53-209ENST00000514665 ARSIQ5FYB1 569 aa12.39□□□□□ -0.43
USP53-209ENST00000514665 NANOGNBQ7Z5D8 188 aa12.39□□□□□ -0.43
USP53-209ENST00000514665 LAPTM4BQ86VI4 370 aa12.39□□□□□ -0.43
USP53-209ENST00000514665 IFNL1Q8IU54 200 aa12.39□□□□□ -0.43
USP53-209ENST00000514665 LGI4Q8N135 537 aa12.39□□□□□ -0.43
USP53-209ENST00000514665 CYB5D2Q8WUJ1 264 aa12.39□□□□□ -0.43
USP53-209ENST00000514665 DNASE1L2Q92874 299 aa12.39□□□□□ -0.43
USP53-209ENST00000514665 C11orf24Q96F05 449 aaPredicted RBP12.39□□□□□ -0.43
USP53-209ENST00000514665 COL21A1Q96P44 957 aa12.39□□□□□ -0.43
USP53-209ENST00000514665 PKP4Q99569 1192 aa12.39□□□□□ -0.43
USP53-209ENST00000514665 YIPF4Q9BSR8 244 aa12.39□□□□□ -0.43
USP53-209ENST00000514665 MIR1-1HGQ9H1L0 117 aa12.39□□□□□ -0.43
USP53-209ENST00000514665 SNTG1Q9NSN8 517 aa12.39□□□□□ -0.43
USP53-209ENST00000514665 MTRRQ9UBK8 725 aa12.39□□□□□ -0.43
USP53-209ENST00000514665 SESN1Q9Y6P5 492 aa12.39□□□□□ -0.43
USP53-209ENST00000514665 PTGESO14684 152 aa12.39□□□□□ -0.43
USP53-209ENST00000514665 LDB2O43679 373 aa12.39□□□□□ -0.43
USP53-209ENST00000514665 GJB5O95377 273 aa12.39□□□□□ -0.43
USP53-209ENST00000514665 SNAP29O95721 258 aa12.39□□□□□ -0.43
USP53-209ENST00000514665 PROZP22891 400 aa12.39□□□□□ -0.43
USP53-209ENST00000514665 DNAJB13P59910 316 aa12.39□□□□□ -0.43
USP53-209ENST00000514665 TLE2Q04725 743 aa12.39□□□□□ -0.43
USP53-209ENST00000514665 TARDBPQ13148 414 aaKnown RBP eCLIP12.39□□□□□ -0.43
USP53-209ENST00000514665 CBX3Q13185 183 aa12.39□□□□□ -0.43
USP53-209ENST00000514665 RAPSNQ13702 412 aa12.39□□□□□ -0.43
USP53-209ENST00000514665 UPP1Q16831 310 aa12.39□□□□□ -0.43
USP53-209ENST00000514665 UNC50Q53HI1 259 aa12.39□□□□□ -0.43
USP53-209ENST00000514665 FAM98AQ8NCA5 519 aaKnown RBP12.39□□□□□ -0.43
USP53-209ENST00000514665 ZCCHC10Q8TBK6 192 aa12.39□□□□□ -0.43
USP53-209ENST00000514665 NARS2Q96I59 477 aaKnown RBP12.39□□□□□ -0.43
USP53-209ENST00000514665 POLR2J2Q9GZM3 115 aaKnown RBP12.39□□□□□ -0.43
USP53-209ENST00000514665 TBC1D17Q9HA65 648 aa12.39□□□□□ -0.43
USP53-209ENST00000514665 MAGEE1Q9HCI5 957 aa12.39□□□□□ -0.43
USP53-209ENST00000514665 TMEM138Q9NPI0 162 aa12.39□□□□□ -0.43
USP53-209ENST00000514665 RPRD1BQ9NQG5 326 aaKnown RBP12.39□□□□□ -0.43
USP53-209ENST00000514665 DUS2Q9NX74 493 aaKnown RBP12.39□□□□□ -0.43
USP53-209ENST00000514665 MALT1Q9UDY8 824 aa12.39□□□□□ -0.43
USP53-209ENST00000514665 CFAP20Q9Y6A4 193 aaKnown RBP12.39□□□□□ -0.43
USP53-209ENST00000514665 GTPBP1O00178 669 aaKnown RBP12.38□□□□□ -0.43
USP53-209ENST00000514665 OAS1P00973 400 aaKnown RBP12.38□□□□□ -0.43
USP53-209ENST00000514665 IGFBP4P22692 258 aa12.38□□□□□ -0.43
USP53-209ENST00000514665 LEPRP48357 1165 aaKnown RBP12.38□□□□□ -0.43
USP53-209ENST00000514665 IL18Q14116 193 aa12.38□□□□□ -0.43
USP53-209ENST00000514665 PIK3R6Q5UE93 754 aa12.38□□□□□ -0.43
USP53-209ENST00000514665 STEAP4Q687X5 459 aa12.38□□□□□ -0.43
USP53-209ENST00000514665 SMYD5Q6GMV2 418 aa12.38□□□□□ -0.43
USP53-209ENST00000514665 POMZP3Q6PJE2 187 aa12.38□□□□□ -0.43
USP53-209ENST00000514665 CYS1Q717R9 158 aa12.38□□□□□ -0.43
USP53-209ENST00000514665 ZNF433Q8N7K0 673 aaPredicted RBP12.38□□□□□ -0.43
USP53-209ENST00000514665 CAPNS2Q96L46 248 aa12.38□□□□□ -0.43
USP53-209ENST00000514665 MUS81Q96NY9 551 aa12.38□□□□□ -0.43
USP53-209ENST00000514665 FLRT1Q9NZU1 646 aa12.38□□□□□ -0.43
USP53-209ENST00000514665 NUP98P52948 1817 aa12.38□□□□□ -0.43
USP53-209ENST00000514665 FAM86C2PA6NEL3 165 aa12.38□□□□□ -0.43
USP53-209ENST00000514665 TMEM88BA6NKF7 163 aa12.38□□□□□ -0.43
USP53-209ENST00000514665 MANBAO00462 879 aa12.38□□□□□ -0.43
USP53-209ENST00000514665 SNNO75324 88 aaPredicted RBP12.38□□□□□ -0.43
USP53-209ENST00000514665 S1PR4O95977 384 aa12.38□□□□□ -0.43
USP53-209ENST00000514665 PRKAR1AP10644 381 aa12.38□□□□□ -0.43
USP53-209ENST00000514665 NT5EP21589 574 aa12.38□□□□□ -0.43
USP53-209ENST00000514665 ITPKBP27987 946 aa12.38□□□□□ -0.43
USP53-209ENST00000514665 ENTPD1P49961 510 aa12.38□□□□□ -0.43
USP53-209ENST00000514665 SMARCD3Q6STE5 483 aa12.38□□□□□ -0.43
USP53-209ENST00000514665 FAM180AQ6UWF9 173 aa12.38□□□□□ -0.43
USP53-209ENST00000514665 SLC15A3Q8IY34 581 aa12.38□□□□□ -0.43
USP53-209ENST00000514665 LRRC17Q8N6Y2 441 aa12.38□□□□□ -0.43
USP53-209ENST00000514665 FLCNQ8NFG4 579 aa12.38□□□□□ -0.43
USP53-209ENST00000514665 TOR3AQ9H497 397 aa12.38□□□□□ -0.43
USP53-209ENST00000514665 RPF2Q9H7B2 306 aaKnown RBP12.38□□□□□ -0.43
USP53-209ENST00000514665 ZNF282Q9UDV7 671 aaPredicted RBP12.38□□□□□ -0.43
USP53-209ENST00000514665 ZCWPW2A0A1B0GU75 182 aa12.38□□□□□ -0.43
USP53-209ENST00000514665 SLC30A4O14863 429 aa12.38□□□□□ -0.43
USP53-209ENST00000514665 HCN1O60741 890 aa12.38□□□□□ -0.43
USP53-209ENST00000514665 ZNF182P17025 639 aaPredicted RBP12.38□□□□□ -0.43
USP53-209ENST00000514665 TIGD6Q17RP2 521 aa12.38□□□□□ -0.43
USP53-209ENST00000514665 LRRC66Q68CR7 880 aa12.38□□□□□ -0.43
USP53-209ENST00000514665 ANKRD26P1Q6NSI1 321 aa12.38□□□□□ -0.43
USP53-209ENST00000514665 KCNJ9Q92806 393 aa12.38□□□□□ -0.43
USP53-209ENST00000514665 UTP4Q969X6 686 aaKnown RBP12.38□□□□□ -0.43
USP53-209ENST00000514665 DNAAF2Q9NVR5 837 aaKnown RBP12.38□□□□□ -0.43
USP53-209ENST00000514665 MYH1P12882 1939 aa12.38□□□□□ -0.43
USP53-209ENST00000514665 DFNA5O60443 496 aa12.38□□□□□ -0.43
USP53-209ENST00000514665 PTPN2P17706 415 aa12.38□□□□□ -0.43
USP53-209ENST00000514665 CCND3P30281 292 aaPredicted RBP12.38□□□□□ -0.43
USP53-209ENST00000514665 ACADVLP49748 655 aa12.38□□□□□ -0.43
USP53-209ENST00000514665 ARSFP54793 590 aa12.38□□□□□ -0.43
USP53-209ENST00000514665 CDKN2DP55273 166 aa12.38□□□□□ -0.43
USP53-209ENST00000514665 EMX2Q04743 252 aa12.38□□□□□ -0.43
USP53-209ENST00000514665 ZFP69Q49AA0 526 aa12.38□□□□□ -0.43
USP53-209ENST00000514665 ZNF789Q5FWF6 425 aa12.38□□□□□ -0.43
USP53-209ENST00000514665 COLEC12Q5KU26 742 aa12.38□□□□□ -0.43
USP53-209ENST00000514665 GDPD4Q6W3E5 623 aa12.38□□□□□ -0.43
USP53-209ENST00000514665 Q6ZVL8 140 aa12.38□□□□□ -0.43
USP53-209ENST00000514665 ADGRG2Q8IZP9 1017 aa12.38□□□□□ -0.43
USP53-209ENST00000514665 UMODL1-AS1Q8N2C9 162 aa12.38□□□□□ -0.43
USP53-209ENST00000514665 TTLL2Q9BWV7 592 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms