RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 THAP1Q9NVV9 213 aa8.48□□□□□ -1.05
LIMCH1-209ENST00000509277 MOCS1Q9NZB8 636 aa8.48□□□□□ -1.05
LIMCH1-209ENST00000509277 IDH3BO43837 385 aa8.48□□□□□ -1.05
LIMCH1-209ENST00000509277 FZD6O60353 706 aa8.48□□□□□ -1.05
LIMCH1-209ENST00000509277 IFNA8P32881 189 aa8.48□□□□□ -1.05
LIMCH1-209ENST00000509277 KLF10Q13118 480 aa8.48□□□□□ -1.05
LIMCH1-209ENST00000509277 PMS2P3Q13401 168 aa8.48□□□□□ -1.05
LIMCH1-209ENST00000509277 NFATC2Q13469 925 aa8.48□□□□□ -1.05
LIMCH1-209ENST00000509277 SYTL3Q4VX76 610 aa8.48□□□□□ -1.05
LIMCH1-209ENST00000509277 TMTC4Q5T4D3 741 aa8.48□□□□□ -1.05
LIMCH1-209ENST00000509277 GPRC6AQ5T6X5 926 aa8.48□□□□□ -1.05
LIMCH1-209ENST00000509277 HECTD2Q5U5R9 776 aa8.48□□□□□ -1.05
LIMCH1-209ENST00000509277 GK5Q6ZS86 529 aa8.48□□□□□ -1.05
LIMCH1-209ENST00000509277 CHID1Q9BWS9 393 aa8.48□□□□□ -1.05
LIMCH1-209ENST00000509277 REXO4Q9GZR2 422 aaKnown RBP8.48□□□□□ -1.05
LIMCH1-209ENST00000509277 C6orf62Q9GZU0 229 aaPredicted RBP8.48□□□□□ -1.05
LIMCH1-209ENST00000509277 TP63Q9H3D4 680 aaPredicted RBP8.48□□□□□ -1.05
LIMCH1-209ENST00000509277 RERGLQ9H628 205 aa8.48□□□□□ -1.05
LIMCH1-209ENST00000509277 ARNT2Q9HBZ2 717 aa8.48□□□□□ -1.05
LIMCH1-209ENST00000509277 MRPL40Q9NQ50 206 aaKnown RBP8.48□□□□□ -1.05
LIMCH1-209ENST00000509277 GALPQ9UBC7 116 aa8.48□□□□□ -1.05
LIMCH1-209ENST00000509277 TRMT6Q9UJA5 497 aaKnown RBP8.48□□□□□ -1.05
LIMCH1-209ENST00000509277 PCDHGA7Q9Y5G6 932 aa8.48□□□□□ -1.05
LIMCH1-209ENST00000509277 CACNA1EQ15878 2313 aa8.47□□□□□ -1.05
LIMCH1-209ENST00000509277 PIKFYVEQ9Y2I7 2098 aa8.47□□□□□ -1.05
LIMCH1-209ENST00000509277 TECTAO75443 2155 aa8.47□□□□□ -1.05
LIMCH1-209ENST00000509277 A0A087WXM4 84 aa8.47□□□□□ -1.05
LIMCH1-209ENST00000509277 PABPN1LA6NDY0 278 aaKnown RBP8.47□□□□□ -1.05
LIMCH1-209ENST00000509277 SLC7A4O43246 635 aa8.47□□□□□ -1.05
LIMCH1-209ENST00000509277 ASNA1O43681 348 aa8.47□□□□□ -1.05
LIMCH1-209ENST00000509277 C2P06681 752 aa8.47□□□□□ -1.05
LIMCH1-209ENST00000509277 CHRNB1P11230 501 aa8.47□□□□□ -1.05
LIMCH1-209ENST00000509277 ZNF7P17097 686 aaPredicted RBP8.47□□□□□ -1.05
LIMCH1-209ENST00000509277 C5AR1P21730 350 aa8.47□□□□□ -1.05
LIMCH1-209ENST00000509277 MPSTP25325 297 aa8.47□□□□□ -1.05
LIMCH1-209ENST00000509277 KIF19Q2TAC6 998 aa8.47□□□□□ -1.05
LIMCH1-209ENST00000509277 FBXO43Q4G163 708 aa8.47□□□□□ -1.05
LIMCH1-209ENST00000509277 WDR45BQ5MNZ6 344 aa8.47□□□□□ -1.05
LIMCH1-209ENST00000509277 TBCELQ5QJ74 424 aa8.47□□□□□ -1.05
LIMCH1-209ENST00000509277 RFPL4BQ6ZWI9 263 aa8.47□□□□□ -1.05
LIMCH1-209ENST00000509277 KIAA0907Q7Z7F0 614 aaPredicted RBP8.47□□□□□ -1.05
LIMCH1-209ENST00000509277 CEP97Q8IW35 865 aa8.47□□□□□ -1.05
LIMCH1-209ENST00000509277 CLEC4FQ8N1N0 589 aa8.47□□□□□ -1.05
LIMCH1-209ENST00000509277 PMEPA1Q969W9 287 aa8.47□□□□□ -1.05
LIMCH1-209ENST00000509277 RBBP8Q99708 897 aa8.47□□□□□ -1.05
LIMCH1-209ENST00000509277 EFHD1Q9BUP0 239 aa8.47□□□□□ -1.05
LIMCH1-209ENST00000509277 MBNL1Q9NR56 388 aaKnown RBP8.47□□□□□ -1.05
LIMCH1-209ENST00000509277 TREX1Q9NSU2 369 aa8.47□□□□□ -1.05
LIMCH1-209ENST00000509277 MMP17Q9ULZ9 603 aa8.47□□□□□ -1.05
LIMCH1-209ENST00000509277 PLLPQ9Y342 182 aa8.47□□□□□ -1.05
LIMCH1-209ENST00000509277 SPEF1Q9Y4P9 236 aa8.47□□□□□ -1.05
LIMCH1-209ENST00000509277 PRSS21Q9Y6M0 314 aa8.47□□□□□ -1.05
LIMCH1-209ENST00000509277 LOC730098B7Z3J9 87 aa8.47□□□□□ -1.05
LIMCH1-209ENST00000509277 SNPHO15079 494 aa8.47□□□□□ -1.05
LIMCH1-209ENST00000509277 TBX1O43435 398 aa8.47□□□□□ -1.05
LIMCH1-209ENST00000509277 ZBTB14O43829 449 aa8.47□□□□□ -1.05
LIMCH1-209ENST00000509277 ALDH1A2O94788 518 aa8.47□□□□□ -1.05
LIMCH1-209ENST00000509277 CHRNGP07510 517 aa8.47□□□□□ -1.05
LIMCH1-209ENST00000509277 ABHD2P08910 425 aa8.47□□□□□ -1.05
LIMCH1-209ENST00000509277 NAT2P11245 290 aa8.47□□□□□ -1.05
LIMCH1-209ENST00000509277 ALOX12P18054 663 aa8.47□□□□□ -1.05
LIMCH1-209ENST00000509277 ENDOUP21128 410 aaKnown RBP8.47□□□□□ -1.05
LIMCH1-209ENST00000509277 MMP12P39900 470 aa8.47□□□□□ -1.05
LIMCH1-209ENST00000509277 ARCN1P48444 511 aaKnown RBP8.47□□□□□ -1.05
LIMCH1-209ENST00000509277 RPL6Q02878 288 aaKnown RBP8.47□□□□□ -1.05
LIMCH1-209ENST00000509277 CACNG1Q06432 222 aa8.47□□□□□ -1.05
LIMCH1-209ENST00000509277 ABRQ12979 859 aa8.47□□□□□ -1.05
LIMCH1-209ENST00000509277 GTF2H3Q13889 308 aa8.47□□□□□ -1.05
LIMCH1-209ENST00000509277 CCINQ13939 588 aa8.47□□□□□ -1.05
LIMCH1-209ENST00000509277 LRRC32Q14392 662 aa8.47□□□□□ -1.05
LIMCH1-209ENST00000509277 COL19A1Q14993 1142 aa8.47□□□□□ -1.05
LIMCH1-209ENST00000509277 ZNF829Q3KNS6 432 aaPredicted RBP8.47□□□□□ -1.05
LIMCH1-209ENST00000509277 PUS10Q3MIT2 529 aaKnown RBP8.47□□□□□ -1.05
LIMCH1-209ENST00000509277 TMEM220Q6QAJ8 160 aa8.47□□□□□ -1.05
LIMCH1-209ENST00000509277 SLC22A16Q86VW1 577 aa8.47□□□□□ -1.05
LIMCH1-209ENST00000509277 ZC3HC1Q86WB0 502 aaKnown RBP8.47□□□□□ -1.05
LIMCH1-209ENST00000509277 PLD6Q8N2A8 252 aaKnown RBP8.47□□□□□ -1.05
LIMCH1-209ENST00000509277 LMNTD1Q8N9Z9 388 aa8.47□□□□□ -1.05
LIMCH1-209ENST00000509277 FAM110BQ8TC76 370 aa8.47□□□□□ -1.05
LIMCH1-209ENST00000509277 NXNL1Q96CM4 212 aa8.47□□□□□ -1.05
LIMCH1-209ENST00000509277 BTBD9Q96Q07 612 aa8.47□□□□□ -1.05
LIMCH1-209ENST00000509277 OLFM1Q99784 485 aa8.47□□□□□ -1.05
LIMCH1-209ENST00000509277 CCDC106Q9BWC9 280 aa8.47□□□□□ -1.05
LIMCH1-209ENST00000509277 IRF2BPLQ9H1B7 796 aa8.47□□□□□ -1.05
LIMCH1-209ENST00000509277 C6orf106Q9H6K1 298 aaPredicted RBP8.47□□□□□ -1.05
LIMCH1-209ENST00000509277 ALG9Q9H6U8 611 aa8.47□□□□□ -1.05
LIMCH1-209ENST00000509277 KLQ9UEF7 1012 aa8.47□□□□□ -1.05
LIMCH1-209ENST00000509277 TEKT2Q9UIF3 430 aa8.47□□□□□ -1.05
LIMCH1-209ENST00000509277 VWA7Q9Y334 891 aa8.47□□□□□ -1.05
LIMCH1-209ENST00000509277 CAB39Q9Y376 341 aaPredicted RBP8.47□□□□□ -1.05
LIMCH1-209ENST00000509277 NEMP2A6NFY4 417 aa8.46□□□□□ -1.05
LIMCH1-209ENST00000509277 MROH6A6NGR9 719 aa8.46□□□□□ -1.05
LIMCH1-209ENST00000509277 ADH1BP00325 375 aa8.46□□□□□ -1.05
LIMCH1-209ENST00000509277 PREPP48147 710 aa8.46□□□□□ -1.05
LIMCH1-209ENST00000509277 TTPAP49638 278 aa8.46□□□□□ -1.05
LIMCH1-209ENST00000509277 IDH3AP50213 366 aa8.46□□□□□ -1.05
LIMCH1-209ENST00000509277 PRKAA2P54646 552 aa8.46□□□□□ -1.05
LIMCH1-209ENST00000509277 CDKN2DP55273 166 aa8.46□□□□□ -1.05
LIMCH1-209ENST00000509277 MRPS21P82921 87 aaKnown RBP8.46□□□□□ -1.05
LIMCH1-209ENST00000509277 CAMK2GQ13555 558 aaPredicted RBP8.46□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms