RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 ZBBXA8MT70 800 aa11.67□□□□□ -0.54
NUP54-202ENST00000502850 PDLIM1O00151 329 aa11.67□□□□□ -0.54
NUP54-202ENST00000502850 ZNF197O14709 1029 aa11.67□□□□□ -0.54
NUP54-202ENST00000502850 DFNA5O60443 496 aa11.67□□□□□ -0.54
NUP54-202ENST00000502850 RECQL5O94762 991 aaPredicted RBP11.67□□□□□ -0.54
NUP54-202ENST00000502850 PDYNP01213 254 aa11.67□□□□□ -0.54
NUP54-202ENST00000502850 ALBP02768 609 aa11.67□□□□□ -0.54
NUP54-202ENST00000502850 CATP04040 527 aaKnown RBP11.67□□□□□ -0.54
NUP54-202ENST00000502850 JUPP14923 745 aa11.67□□□□□ -0.54
NUP54-202ENST00000502850 ALDH3B2P48448 385 aa11.67□□□□□ -0.54
NUP54-202ENST00000502850 NRIP1P48552 1158 aa11.67□□□□□ -0.54
NUP54-202ENST00000502850 ALDH3A2P51648 485 aa11.67□□□□□ -0.54
NUP54-202ENST00000502850 UBE3AQ05086 875 aa11.67□□□□□ -0.54
NUP54-202ENST00000502850 RBBP5Q15291 538 aaKnown RBP11.67□□□□□ -0.54
NUP54-202ENST00000502850 PTCHD3Q3KNS1 767 aa11.67□□□□□ -0.54
NUP54-202ENST00000502850 TMEM259Q4ZIN3 620 aa11.67□□□□□ -0.54
NUP54-202ENST00000502850 C10orf62Q5T681 223 aaPredicted RBP11.67□□□□□ -0.54
NUP54-202ENST00000502850 FRG2Q64ET8 278 aa11.67□□□□□ -0.54
NUP54-202ENST00000502850 NAIF1Q69YI7 327 aaPredicted RBP11.67□□□□□ -0.54
NUP54-202ENST00000502850 ASTLQ6HA08 431 aaPredicted RBP11.67□□□□□ -0.54
NUP54-202ENST00000502850 RALGPS2Q86X27 583 aaPredicted RBP11.67□□□□□ -0.54
NUP54-202ENST00000502850 KLHDC8AQ8IYD2 350 aa11.67□□□□□ -0.54
NUP54-202ENST00000502850 MICU2Q8IYU8 434 aa11.67□□□□□ -0.54
NUP54-202ENST00000502850 MRPL43Q8N983 215 aaKnown RBP11.67□□□□□ -0.54
NUP54-202ENST00000502850 TERB1Q8NA31 727 aa11.67□□□□□ -0.54
NUP54-202ENST00000502850 CHST14Q8NCH0 376 aa11.67□□□□□ -0.54
NUP54-202ENST00000502850 SLC22A17Q8WUG5 538 aa11.67□□□□□ -0.54
NUP54-202ENST00000502850 CYGBQ8WWM9 190 aa11.67□□□□□ -0.54
NUP54-202ENST00000502850 NELL1Q92832 810 aa11.67□□□□□ -0.54
NUP54-202ENST00000502850 FAM162AQ96A26 154 aa11.67□□□□□ -0.54
NUP54-202ENST00000502850 DTNBP1Q96EV8 351 aa11.67□□□□□ -0.54
NUP54-202ENST00000502850 FOPNLQ96NB1 174 aa11.67□□□□□ -0.54
NUP54-202ENST00000502850 FRG2BQ96QU4 278 aa11.67□□□□□ -0.54
NUP54-202ENST00000502850 TRIM8Q9BZR9 551 aa11.67□□□□□ -0.54
NUP54-202ENST00000502850 FARSBQ9NSD9 589 aaKnown RBP11.67□□□□□ -0.54
NUP54-202ENST00000502850 DNAJB9Q9UBS3 223 aa11.67□□□□□ -0.54
NUP54-202ENST00000502850 IL36AQ9UHA7 158 aa11.67□□□□□ -0.54
NUP54-202ENST00000502850 SLCO3A1Q9UIG8 710 aa11.67□□□□□ -0.54
NUP54-202ENST00000502850 PCDHGB4Q9UN71 923 aa11.67□□□□□ -0.54
NUP54-202ENST00000502850 CCL26Q9Y258 94 aa11.67□□□□□ -0.54
NUP54-202ENST00000502850 PCDHGB5Q9Y5G0 923 aa11.67□□□□□ -0.54
NUP54-202ENST00000502850 FADS3Q9Y5Q0 445 aa11.67□□□□□ -0.54
NUP54-202ENST00000502850 AK5Q9Y6K8 562 aa11.67□□□□□ -0.54
NUP54-202ENST00000502850 NUP210Q8TEM1 1887 aaPredicted RBP11.66□□□□□ -0.54
NUP54-202ENST00000502850 TRBV5-3A0A0A0MS03 114 aa11.66□□□□□ -0.54
NUP54-202ENST00000502850 TRIM64CA6NLI5 447 aa11.66□□□□□ -0.54
NUP54-202ENST00000502850 CXCR6O00574 342 aa11.66□□□□□ -0.54
NUP54-202ENST00000502850 WNT9AO14904 365 aa11.66□□□□□ -0.54
NUP54-202ENST00000502850 PER2O15055 1255 aa11.66□□□□□ -0.54
NUP54-202ENST00000502850 VILLO15195 856 aa11.66□□□□□ -0.54
NUP54-202ENST00000502850 ATG13O75143 517 aa11.66□□□□□ -0.54
NUP54-202ENST00000502850 MYO1DO94832 1006 aa11.66□□□□□ -0.54
NUP54-202ENST00000502850 SLCO2B1O94956 709 aa11.66□□□□□ -0.54
NUP54-202ENST00000502850 RHOP08100 348 aa11.66□□□□□ -0.54
NUP54-202ENST00000502850 POU2F2P09086 479 aa11.66□□□□□ -0.54
NUP54-202ENST00000502850 LINC00271P0C7V0 271 aa11.66□□□□□ -0.54
NUP54-202ENST00000502850 EPORP19235 508 aa11.66□□□□□ -0.54
NUP54-202ENST00000502850 PRPS1L1P21108 318 aa11.66□□□□□ -0.54
NUP54-202ENST00000502850 HNF4AP41235 474 aa11.66□□□□□ -0.54
NUP54-202ENST00000502850 CCR2P41597 374 aa11.66□□□□□ -0.54
NUP54-202ENST00000502850 SRSF11Q05519 484 aaKnown RBP11.66□□□□□ -0.54
NUP54-202ENST00000502850 ABHD18Q0P651 414 aa11.66□□□□□ -0.54
NUP54-202ENST00000502850 BIRC2Q13490 618 aa11.66□□□□□ -0.54
NUP54-202ENST00000502850 DAG1Q14118 895 aa11.66□□□□□ -0.54
NUP54-202ENST00000502850 SELPLGQ14242 412 aa11.66□□□□□ -0.54
NUP54-202ENST00000502850 MYBPC3Q14896 1274 aa11.66□□□□□ -0.54
NUP54-202ENST00000502850 ZNF805Q5CZA5 627 aa11.66□□□□□ -0.54
NUP54-202ENST00000502850 HENMT1Q5T8I9 393 aaKnown RBP11.66□□□□□ -0.54
NUP54-202ENST00000502850 MBOAT1Q6ZNC8 495 aa11.66□□□□□ -0.54
NUP54-202ENST00000502850 RASGRP3Q8IV61 690 aa11.66□□□□□ -0.54
NUP54-202ENST00000502850 EID3Q8N140 333 aa11.66□□□□□ -0.54
NUP54-202ENST00000502850 ZNF786Q8N393 782 aa11.66□□□□□ -0.54
NUP54-202ENST00000502850 BEND7Q8N7W2 519 aaPredicted RBP11.66□□□□□ -0.54
NUP54-202ENST00000502850 ADAMTS16Q8TE57 1224 aa11.66□□□□□ -0.54
NUP54-202ENST00000502850 FIG4Q92562 907 aa11.66□□□□□ -0.54
NUP54-202ENST00000502850 TMEM159Q96B96 161 aa11.66□□□□□ -0.54
NUP54-202ENST00000502850 FCRL1Q96LA6 429 aa11.66□□□□□ -0.54
NUP54-202ENST00000502850 CCDC138Q96M89 665 aa11.66□□□□□ -0.54
NUP54-202ENST00000502850 ZCCHC2Q9C0B9 1178 aaKnown RBP11.66□□□□□ -0.54
NUP54-202ENST00000502850 PCDH12Q9NPG4 1184 aa11.66□□□□□ -0.54
NUP54-202ENST00000502850 RSL24D1Q9UHA3 163 aaKnown RBP11.66□□□□□ -0.54
NUP54-202ENST00000502850 NEUROG3Q9Y4Z2 214 aa11.66□□□□□ -0.54
NUP54-202ENST00000502850 TRIM64A6NGJ6 449 aa11.65□□□□□ -0.54
NUP54-202ENST00000502850 ZNF701M0R085 212 aaPredicted RBP11.65□□□□□ -0.54
NUP54-202ENST00000502850 DLGAP1O14490 977 aa11.65□□□□□ -0.54
NUP54-202ENST00000502850 PSIP1O75475 530 aaKnown RBP11.65□□□□□ -0.54
NUP54-202ENST00000502850 LEFTY1O75610 366 aa11.65□□□□□ -0.54
NUP54-202ENST00000502850 HALP42357 657 aa11.65□□□□□ -0.54
NUP54-202ENST00000502850 TRPC1P48995 793 aa11.65□□□□□ -0.54
NUP54-202ENST00000502850 ARSFP54793 590 aa11.65□□□□□ -0.54
NUP54-202ENST00000502850 C21orf58P58505 322 aa11.65□□□□□ -0.54
NUP54-202ENST00000502850 ST8SIA6P61647 398 aa11.65□□□□□ -0.54
NUP54-202ENST00000502850 YBX1P67809 324 aaKnown RBP11.65□□□□□ -0.54
NUP54-202ENST00000502850 SEMG2Q02383 582 aa11.65□□□□□ -0.54
NUP54-202ENST00000502850 IRF8Q02556 426 aa11.65□□□□□ -0.54
NUP54-202ENST00000502850 PCDH1Q08174 1060 aa11.65□□□□□ -0.54
NUP54-202ENST00000502850 LY6G5CQ5SRR4 150 aa11.65□□□□□ -0.54
NUP54-202ENST00000502850 PLPP4Q5VZY2 271 aa11.65□□□□□ -0.54
NUP54-202ENST00000502850 SUSD1Q6UWL2 747 aa11.65□□□□□ -0.54
NUP54-202ENST00000502850 DET1Q7L5Y6 550 aa11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms