RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 VPS4AQ9UN37 437 aa10.51□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 COPG1Q9Y678 874 aaKnown RBP10.51□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 LATO43561 262 aa10.5□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 ULK1O75385 1050 aa10.5□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 CYP7B1O75881 506 aa10.5□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 ITGB8P26012 769 aa10.5□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 ETV3P41162 512 aa10.5□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 RPIAP49247 311 aa10.5□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 STC1P52823 247 aa10.5□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 EMP3P54852 163 aa10.5□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 FOXA1P55317 472 aa10.5□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 NAE1Q13564 534 aa10.5□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 SEMA3AQ14563 771 aa10.5□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 TPGS2Q68CL5 300 aa10.5□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 ZNF773Q6PK81 442 aa10.5□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 BHLHA9Q7RTU4 235 aa10.5□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 RBFAQ8N0V3 343 aa10.5□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 PACRGLQ8N7B6 248 aa10.5□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 C2CD4AQ8NCU7 369 aaPredicted RBP10.5□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 OR2AP1Q8NGE2 309 aa10.5□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 OR52B6Q8NGF0 335 aa10.5□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 PTERQ96BW5 349 aa10.5□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 C1orf74Q96LT6 269 aa10.5□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 YTHDF1Q9BYJ9 559 aaKnown RBP10.5□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 PLAC1Q9HBJ0 212 aa10.5□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP10.5□□□□□ -0.733e-7■■□□□ 11.5
MSH5-SAPCD1-207ENST00000493662 CROCCQ5TZA2 2017 aa10.5□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 SLC22A1O15245 554 aa10.5□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 KDELR3O43731 214 aa10.5□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 YES1P07947 543 aa10.5□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 DHRS4L1P0CG22 281 aa10.5□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 KCNC1P48547 511 aa10.5□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 DGKGP49619 791 aa10.5□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 GPM6BQ13491 265 aa10.5□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 OR4D1Q15615 310 aa10.5□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 REP15Q6BDI9 236 aa10.5□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 ANKRD26P1Q6NSI1 321 aa10.5□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 ERAP2Q6P179 960 aa10.5□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 ZNF621Q6ZSS3 439 aa10.5□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 PLEKHM3Q6ZWE6 761 aa10.5□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 KBTBD8Q8NFY9 601 aa10.5□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 ARRDC2Q8TBH0 407 aa10.5□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 NUDT8Q8WV74 236 aa10.5□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 ZSCAN5AQ9BUG6 496 aa10.5□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 RIOK2Q9BVS4 552 aaKnown RBP10.5□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 BRD9Q9H8M2 597 aa10.5□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 UCKL1Q9NWZ5 548 aa10.5□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 PAQR5Q9NXK6 330 aaPredicted RBP10.5□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 A0A1B0GTW7 788 aa10.5□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 I3L521 148 aa10.5□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 PRKACAP17612 351 aa10.5□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 DGKAP23743 735 aa10.5□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 AZGP1P25311 298 aaKnown RBP10.5□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 CPOXP36551 454 aa10.5□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 CCT8P50990 548 aa10.5□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 TXNL4AP83876 142 aaKnown RBP10.5□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 FAM180BQ6P0A1 224 aa10.5□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 SLC39A11Q8N1S5 342 aa10.5□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 MCOLN3Q8TDD5 553 aa10.5□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 MZB1Q8WU39 189 aa10.5□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 FOXJ1Q92949 421 aa10.5□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 CLIP3Q96DZ5 547 aa10.5□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 SLC39A13Q96H72 371 aa10.5□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 TMEM175Q9BSA9 504 aa10.5□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 FAM83DQ9H4H8 585 aa10.5□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 SUV39H2Q9H5I1 410 aa10.5□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 AKTIPQ9H8T0 292 aa10.5□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 ANKMY1Q9P2S6 941 aa10.5□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 NUMBLQ9Y6R0 609 aa10.5□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 ZNF99A8MXY4 864 aaPredicted RBP10.5□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 G3V2L1 256 aa10.5□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 RECQL5O94762 991 aaPredicted RBP10.5□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 PGLSO95336 258 aa10.5□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 POLR2LP62875 67 aaKnown RBP10.5□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 CSTF3Q12996 717 aaKnown RBP10.5□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 ACAP2Q15057 778 aa10.5□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 QPRTQ15274 297 aa10.5□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 TAF1AQ15573 450 aaPredicted RBP10.5□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 TAB1Q15750 504 aa10.5□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 KDELC1Q6UW63 502 aa10.5□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 ERMP1Q7Z2K6 904 aa10.5□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 VPS35Q96QK1 796 aa10.5□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 DHRS4Q9BTZ2 278 aa10.5□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 TDRD1Q9BXT4 1180 aaKnown RBP10.5□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 UGT2B28Q9BY64 529 aa10.5□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 TMEM245Q9H330 911 aa10.5□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 MFSD1Q9H3U5 465 aa10.5□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 COQ3Q9NZJ6 369 aa10.5□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 ASF1AQ9Y294 204 aa10.5□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 GRM6O15303 877 aa10.49□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 LEFTY1O75610 366 aa10.49□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 ANGPTL1O95841 491 aa10.49□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 GNRH1P01148 92 aa10.49□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 ANXA5P08758 320 aa10.49□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 CD1EP15812 388 aa10.49□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 ARF5P84085 180 aa10.49□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 GRB7Q14451 532 aa10.49□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 XKR6Q5GH73 641 aa10.49□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 CES4AQ5XG92 561 aa10.49□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 TRIQKQ629K1 86 aa10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms