RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 RAB42Q8N4Z0 105 aa20.99■□□□□ 0.95
SMC4-221ENST00000489573 ACTRT2Q8TDY3 377 aa20.99■□□□□ 0.95
SMC4-221ENST00000489573 MAGEB10Q96LZ2 347 aaPredicted RBP20.99■□□□□ 0.95
SMC4-221ENST00000489573 CAMK1GQ96NX5 476 aa20.99■□□□□ 0.95
SMC4-221ENST00000489573 OR4K3Q96R72 315 aa20.99■□□□□ 0.95
SMC4-221ENST00000489573 SLC29A3Q9BZD2 475 aa20.99■□□□□ 0.95
SMC4-221ENST00000489573 TUBB1Q9H4B7 451 aa20.99■□□□□ 0.95
SMC4-221ENST00000489573 PFDN4Q9NQP4 134 aa20.99■□□□□ 0.95
SMC4-221ENST00000489573 CCDC177Q9NQR7 707 aaPredicted RBP20.99■□□□□ 0.95
SMC4-221ENST00000489573 GPRC5BQ9NZH0 403 aa20.99■□□□□ 0.95
SMC4-221ENST00000489573 RNF11Q9Y3C5 154 aa20.99■□□□□ 0.95
SMC4-221ENST00000489573 ATXN2Q99700 1313 aaKnown RBP20.99■□□□□ 0.95
SMC4-221ENST00000489573 A6NCN8 305 aa20.98■□□□□ 0.95
SMC4-221ENST00000489573 UBOX5O94941 541 aa20.98■□□□□ 0.95
SMC4-221ENST00000489573 EML2O95834 649 aa20.98■□□□□ 0.95
SMC4-221ENST00000489573 F3P13726 295 aa20.98■□□□□ 0.95
SMC4-221ENST00000489573 CTSEP14091 401 aa20.98■□□□□ 0.95
SMC4-221ENST00000489573 CCND1P24385 295 aa20.98■□□□□ 0.95
SMC4-221ENST00000489573 CSTF1Q05048 431 aaKnown RBP20.98■□□□□ 0.95
SMC4-221ENST00000489573 FASTKQ14296 549 aaKnown RBP20.98■□□□□ 0.95
SMC4-221ENST00000489573 CYP2A13Q16696 494 aa20.98■□□□□ 0.95
SMC4-221ENST00000489573 YTHDF3Q7Z739 585 aaKnown RBP20.98■□□□□ 0.95
SMC4-221ENST00000489573 MYLK4Q86YV6 388 aaPredicted RBP20.98■□□□□ 0.95
SMC4-221ENST00000489573 CEP70Q8NHQ1 597 aa20.98■□□□□ 0.95
SMC4-221ENST00000489573 PRR11Q96HE9 360 aaPredicted RBP20.98■□□□□ 0.95
SMC4-221ENST00000489573 MENTQ9BUN1 341 aa20.98■□□□□ 0.95
SMC4-221ENST00000489573 TRIM33Q9UPN9 1127 aa20.98■□□□□ 0.95
SMC4-221ENST00000489573 CLGNO14967 610 aa20.97■□□□□ 0.95
SMC4-221ENST00000489573 UGDHO60701 494 aa20.97■□□□□ 0.95
SMC4-221ENST00000489573 JUNDP17535 347 aa20.97■□□□□ 0.95
SMC4-221ENST00000489573 TSTA3Q13630 321 aaPredicted RBP20.97■□□□□ 0.95
SMC4-221ENST00000489573 SPDYAQ5MJ70 313 aa20.97■□□□□ 0.95
SMC4-221ENST00000489573 TCHHL1Q5QJ38 904 aaPredicted RBP20.97■□□□□ 0.95
SMC4-221ENST00000489573 C11orf74Q86VG3 221 aa20.97■□□□□ 0.95
SMC4-221ENST00000489573 MAML2Q8IZL2 1156 aaPredicted RBP20.97■□□□□ 0.95
SMC4-221ENST00000489573 TMEM105Q8N8V8 129 aa20.97■□□□□ 0.95
SMC4-221ENST00000489573 L3MBTL4Q8NA19 623 aa20.97■□□□□ 0.95
SMC4-221ENST00000489573 MIPEPQ99797 713 aa20.97■□□□□ 0.95
SMC4-221ENST00000489573 CCT7Q99832 543 aa20.97■□□□□ 0.95
SMC4-221ENST00000489573 RAB11FIP5Q9BXF6 653 aa20.97■□□□□ 0.95
SMC4-221ENST00000489573 APOBEC3BQ9UH17 382 aaKnown RBP20.97■□□□□ 0.95
SMC4-221ENST00000489573 DYRK1BQ9Y463 629 aa20.97■□□□□ 0.95
SMC4-221ENST00000489573 PTGDR2Q9Y5Y4 395 aa20.97■□□□□ 0.95
SMC4-221ENST00000489573 KCNE2Q9Y6J6 123 aa20.97■□□□□ 0.95
SMC4-221ENST00000489573 COLEC10Q9Y6Z7 277 aa20.97■□□□□ 0.95
SMC4-221ENST00000489573 E7EQ34 232 aa20.97■□□□□ 0.95
SMC4-221ENST00000489573 KDM1AO60341 852 aa20.97■□□□□ 0.95
SMC4-221ENST00000489573 LINC00032P0C843 101 aa20.97■□□□□ 0.95
SMC4-221ENST00000489573 NDUFS1P28331 727 aa20.97■□□□□ 0.95
SMC4-221ENST00000489573 IRF8Q02556 426 aa20.97■□□□□ 0.95
SMC4-221ENST00000489573 PCDH1Q08174 1060 aa20.97■□□□□ 0.95
SMC4-221ENST00000489573 CHIT1Q13231 466 aa20.97■□□□□ 0.95
SMC4-221ENST00000489573 FAM91A1Q658Y4 838 aa20.97■□□□□ 0.95
SMC4-221ENST00000489573 SUSD1Q6UWL2 747 aa20.97■□□□□ 0.95
SMC4-221ENST00000489573 LMNTD1Q8N9Z9 388 aa20.97■□□□□ 0.95
SMC4-221ENST00000489573 C3orf30Q96M34 536 aa20.97■□□□□ 0.95
SMC4-221ENST00000489573 CAAP1Q9H8G2 361 aa20.97■□□□□ 0.95
SMC4-221ENST00000489573 SAR1AQ9NR31 198 aa20.97■□□□□ 0.95
SMC4-221ENST00000489573 TAAR2Q9P1P5 351 aa20.97■□□□□ 0.95
SMC4-221ENST00000489573 KCNE1BA0A087WTH5 132 aa20.96■□□□□ 0.95
SMC4-221ENST00000489573 FFAR3O14843 346 aa20.96■□□□□ 0.95
SMC4-221ENST00000489573 GPR42O15529 346 aa20.96■□□□□ 0.95
SMC4-221ENST00000489573 PRAMEF4O60810 478 aa20.96■□□□□ 0.95
SMC4-221ENST00000489573 VPS4BO75351 444 aa20.96■□□□□ 0.95
SMC4-221ENST00000489573 CSF2P04141 144 aa20.96■□□□□ 0.95
SMC4-221ENST00000489573 NME1P15531 152 aaKnown RBP20.96■□□□□ 0.95
SMC4-221ENST00000489573 NCF2P19878 526 aaPredicted RBP20.96■□□□□ 0.95
SMC4-221ENST00000489573 PKLRP30613 574 aa20.96■□□□□ 0.95
SMC4-221ENST00000489573 HTR6P50406 440 aa20.96■□□□□ 0.95
SMC4-221ENST00000489573 NXPH1P58417 271 aa20.96■□□□□ 0.95
SMC4-221ENST00000489573 GALNTL6Q49A17 601 aa20.96■□□□□ 0.95
SMC4-221ENST00000489573 XKR7Q5GH72 579 aa20.96■□□□□ 0.95
SMC4-221ENST00000489573 PRAMEF14Q5SWL7 426 aa20.96■□□□□ 0.95
SMC4-221ENST00000489573 PRAMEF9Q5VWM5 478 aa20.96■□□□□ 0.95
SMC4-221ENST00000489573 PRAMEF13Q5VWM6 474 aa20.96■□□□□ 0.95
SMC4-221ENST00000489573 LIPJQ5W064 366 aa20.96■□□□□ 0.95
SMC4-221ENST00000489573 RNF165Q6ZSG1 346 aa20.96■□□□□ 0.95
SMC4-221ENST00000489573 TAF8Q7Z7C8 310 aa20.96■□□□□ 0.95
SMC4-221ENST00000489573 OR52E1Q8NGJ3 308 aa20.96■□□□□ 0.95
SMC4-221ENST00000489573 SETD7Q8WTS6 366 aaKnown RBP20.96■□□□□ 0.95
SMC4-221ENST00000489573 GAB3Q8WWW8 586 aa20.96■□□□□ 0.95
SMC4-221ENST00000489573 SMPDL3AQ92484 453 aa20.96■□□□□ 0.95
SMC4-221ENST00000489573 CXorf40BQ96DE9 158 aa20.96■□□□□ 0.95
SMC4-221ENST00000489573 KIR3DX1Q9H7L2 352 aa20.96■□□□□ 0.95
SMC4-221ENST00000489573 ATP6AP2A0A1C7CYW4 349 aa20.95■□□□□ 0.94
SMC4-221ENST00000489573 VILLO15195 856 aa20.95■□□□□ 0.94
SMC4-221ENST00000489573 BCAT2O15382 392 aaPredicted RBP20.95■□□□□ 0.94
SMC4-221ENST00000489573 ATP6AP2O75787 350 aa20.95■□□□□ 0.94
SMC4-221ENST00000489573 CELA2BP08218 269 aaPredicted RBP20.95■□□□□ 0.94
SMC4-221ENST00000489573 JUPP14923 745 aa20.95■□□□□ 0.94
SMC4-221ENST00000489573 NPPBP16860 134 aa20.95■□□□□ 0.94
SMC4-221ENST00000489573 GNAZP19086 355 aa20.95■□□□□ 0.94
SMC4-221ENST00000489573 RAB28P51157 221 aa20.95■□□□□ 0.94
SMC4-221ENST00000489573 XKR6Q5GH73 641 aa20.95■□□□□ 0.94
SMC4-221ENST00000489573 THEMIS2Q5TEJ8 643 aa20.95■□□□□ 0.94
SMC4-221ENST00000489573 IL27RAQ6UWB1 636 aa20.95■□□□□ 0.94
SMC4-221ENST00000489573 SCIMPQ6UWF3 145 aa20.95■□□□□ 0.94
SMC4-221ENST00000489573 LCTLQ6UWM7 567 aa20.95■□□□□ 0.94
SMC4-221ENST00000489573 LARP4Q71RC2 724 aaKnown RBP eCLIP20.95■□□□□ 0.944e-12■■■■□ 24.2
SMC4-221ENST00000489573 DTWD2Q8NBA8 298 aa20.95■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms