RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 FRMD1Q8N878 549 aa11.83□□□□□ -0.52
HDAC6-230ENST00000488543 TMEM102Q8N9M5 508 aaPredicted RBP11.83□□□□□ -0.52
HDAC6-230ENST00000488543 GLMNQ92990 594 aa11.83□□□□□ -0.52
HDAC6-230ENST00000488543 MYOCQ99972 504 aa11.83□□□□□ -0.52
HDAC6-230ENST00000488543 LGR4Q9BXB1 951 aa11.83□□□□□ -0.52
HDAC6-230ENST00000488543 OR2AG1Q9H205 316 aa11.83□□□□□ -0.52
HDAC6-230ENST00000488543 DDX18Q9NVP1 670 aaKnown RBP11.83□□□□□ -0.52
HDAC6-230ENST00000488543 ARL15Q9NXU5 204 aa11.83□□□□□ -0.52
HDAC6-230ENST00000488543 PRSS51A0A1B0GVH4 220 aa11.83□□□□□ -0.52
HDAC6-230ENST00000488543 A0A1W2PQU0 124 aa11.83□□□□□ -0.52
HDAC6-230ENST00000488543 C7orf72A4D263 438 aa11.83□□□□□ -0.52
HDAC6-230ENST00000488543 PSMD12O00232 456 aaPredicted RBP11.83□□□□□ -0.52
HDAC6-230ENST00000488543 PLOD2O00469 737 aa11.83□□□□□ -0.52
HDAC6-230ENST00000488543 PLRG1O43660 514 aaKnown RBP11.83□□□□□ -0.52
HDAC6-230ENST00000488543 BCAS2O75934 225 aaPredicted RBP11.83□□□□□ -0.52
HDAC6-230ENST00000488543 OTCP00480 354 aa11.83□□□□□ -0.52
HDAC6-230ENST00000488543 PCCBP05166 539 aa11.83□□□□□ -0.52
HDAC6-230ENST00000488543 GSTM1P09488 218 aa11.83□□□□□ -0.52
HDAC6-230ENST00000488543 ACADMP11310 421 aa11.83□□□□□ -0.52
HDAC6-230ENST00000488543 SLC6A12P48065 614 aa11.83□□□□□ -0.52
HDAC6-230ENST00000488543 PREPP48147 710 aa11.83□□□□□ -0.52
HDAC6-230ENST00000488543 PXNP49023 591 aaPredicted RBP11.83□□□□□ -0.52
HDAC6-230ENST00000488543 TPMTP51580 245 aa11.83□□□□□ -0.52
HDAC6-230ENST00000488543 PPP2CBP62714 309 aa11.83□□□□□ -0.52
HDAC6-230ENST00000488543 PPP2CAP67775 309 aa11.83□□□□□ -0.52
HDAC6-230ENST00000488543 GSTM4Q03013 218 aa11.83□□□□□ -0.52
HDAC6-230ENST00000488543 FASTKQ14296 549 aaKnown RBP11.83□□□□□ -0.52
HDAC6-230ENST00000488543 MTX3Q5HYI7 312 aa11.83□□□□□ -0.52
HDAC6-230ENST00000488543 REP15Q6BDI9 236 aa11.83□□□□□ -0.52
HDAC6-230ENST00000488543 OGFOD2Q6N063 350 aa11.83□□□□□ -0.52
HDAC6-230ENST00000488543 MARVELD2Q8N4S9 558 aa11.83□□□□□ -0.52
HDAC6-230ENST00000488543 SKA2Q8WVK7 121 aaPredicted RBP11.83□□□□□ -0.52
HDAC6-230ENST00000488543 TUBGCP3Q96CW5 907 aa11.83□□□□□ -0.52
HDAC6-230ENST00000488543 BTBD9Q96Q07 612 aa11.83□□□□□ -0.52
HDAC6-230ENST00000488543 LTB4R2Q9NPC1 389 aa11.83□□□□□ -0.52
HDAC6-230ENST00000488543 FZD3Q9NPG1 666 aa11.83□□□□□ -0.52
HDAC6-230ENST00000488543 THEGQ9P2T0 379 aa11.83□□□□□ -0.52
HDAC6-230ENST00000488543 ATXN10Q9UBB4 475 aa11.83□□□□□ -0.52
HDAC6-230ENST00000488543 WNT16Q9UBV4 365 aa11.83□□□□□ -0.52
HDAC6-230ENST00000488543 MUTYHQ9UIF7 546 aa11.83□□□□□ -0.52
HDAC6-230ENST00000488543 TMEM98Q9Y2Y6 226 aa11.83□□□□□ -0.52
HDAC6-230ENST00000488543 HEMK1Q9Y5R4 338 aaPredicted RBP11.83□□□□□ -0.52
HDAC6-230ENST00000488543 KANSL1LA0AUZ9 987 aa11.82□□□□□ -0.52
HDAC6-230ENST00000488543 PRORSD1PA6NEY8 169 aa11.82□□□□□ -0.52
HDAC6-230ENST00000488543 ARHGEF33A8MVX0 844 aa11.82□□□□□ -0.52
HDAC6-230ENST00000488543 SLC31A1O15431 190 aa11.82□□□□□ -0.52
HDAC6-230ENST00000488543 VPS4BO75351 444 aa11.82□□□□□ -0.52
HDAC6-230ENST00000488543 KATNA1O75449 491 aa11.82□□□□□ -0.52
HDAC6-230ENST00000488543 PSIP1O75475 530 aaKnown RBP11.82□□□□□ -0.52
HDAC6-230ENST00000488543 STK16O75716 305 aa11.82□□□□□ -0.52
HDAC6-230ENST00000488543 CLPTM1O96005 669 aa11.82□□□□□ -0.52
HDAC6-230ENST00000488543 LBPP18428 481 aa11.82□□□□□ -0.52
HDAC6-230ENST00000488543 EEF1AKMT2Q5JPI9 291 aaKnown RBP11.82□□□□□ -0.52
HDAC6-230ENST00000488543 TICAM1Q8IUC6 712 aa11.82□□□□□ -0.52
HDAC6-230ENST00000488543 FUNDC1Q8IVP5 155 aa11.82□□□□□ -0.52
HDAC6-230ENST00000488543 TCAIMQ8N3R3 496 aa11.82□□□□□ -0.52
HDAC6-230ENST00000488543 NCSTNQ92542 709 aa11.82□□□□□ -0.52
HDAC6-230ENST00000488543 FOXJ1Q92949 421 aa11.82□□□□□ -0.52
HDAC6-230ENST00000488543 MSANTD3Q96H12 275 aa11.82□□□□□ -0.52
HDAC6-230ENST00000488543 COX14Q96I36 57 aa11.82□□□□□ -0.52
HDAC6-230ENST00000488543 COQ10BQ9H8M1 238 aa11.82□□□□□ -0.52
HDAC6-230ENST00000488543 TRIM39Q9HCM9 518 aa11.82□□□□□ -0.52
HDAC6-230ENST00000488543 OR1A2Q9Y585 309 aa11.82□□□□□ -0.52
HDAC6-230ENST00000488543 PCYT1BQ9Y5K3 369 aaPredicted RBP11.82□□□□□ -0.52
HDAC6-230ENST00000488543 C19orf67A6NJJ6 358 aa11.82□□□□□ -0.52
HDAC6-230ENST00000488543 ZNF839A8K0R7 811 aa11.82□□□□□ -0.52
HDAC6-230ENST00000488543 GIPC1O14908 333 aa11.82□□□□□ -0.52
HDAC6-230ENST00000488543 CLGNO14967 610 aa11.82□□□□□ -0.52
HDAC6-230ENST00000488543 RNGTTO60942 597 aaKnown RBP11.82□□□□□ -0.52
HDAC6-230ENST00000488543 CHEK2O96017 543 aa11.82□□□□□ -0.52
HDAC6-230ENST00000488543 HGFP14210 728 aa11.82□□□□□ -0.52
HDAC6-230ENST00000488543 ZNF8P17098 575 aaPredicted RBP11.82□□□□□ -0.52
HDAC6-230ENST00000488543 CYP2A7P20853 494 aa11.82□□□□□ -0.52
HDAC6-230ENST00000488543 PBLDP30039 288 aaPredicted RBP11.82□□□□□ -0.52
HDAC6-230ENST00000488543 STARD6P59095 220 aa11.82□□□□□ -0.52
HDAC6-230ENST00000488543 PRKCQQ04759 706 aa11.82□□□□□ -0.52
HDAC6-230ENST00000488543 ABRQ12979 859 aa11.82□□□□□ -0.52
HDAC6-230ENST00000488543 INPP5AQ14642 412 aa11.82□□□□□ -0.52
HDAC6-230ENST00000488543 SYTL3Q4VX76 610 aa11.82□□□□□ -0.52
HDAC6-230ENST00000488543 TTC23LQ6PF05 361 aa11.82□□□□□ -0.52
HDAC6-230ENST00000488543 ADAMTSL4Q6UY14 1074 aa11.82□□□□□ -0.52
HDAC6-230ENST00000488543 Q6ZSR9 355 aa11.82□□□□□ -0.52
HDAC6-230ENST00000488543 MILR1Q7Z6M3 343 aa11.82□□□□□ -0.52
HDAC6-230ENST00000488543 ZNF547Q8IVP9 402 aa11.82□□□□□ -0.52
HDAC6-230ENST00000488543 SLC22A15Q8IZD6 547 aa11.82□□□□□ -0.52
HDAC6-230ENST00000488543 METTL6Q8TCB7 284 aa11.82□□□□□ -0.52
HDAC6-230ENST00000488543 FAM131CQ96AQ9 280 aa11.82□□□□□ -0.52
HDAC6-230ENST00000488543 EME1Q96AY2 570 aa11.82□□□□□ -0.52
HDAC6-230ENST00000488543 SLCO4A1Q96BD0 722 aa11.82□□□□□ -0.52
HDAC6-230ENST00000488543 NECAB3Q96P71 396 aaPredicted RBP11.82□□□□□ -0.52
HDAC6-230ENST00000488543 HHIPQ96QV1 700 aa11.82□□□□□ -0.52
HDAC6-230ENST00000488543 SLC29A1Q99808 456 aa11.82□□□□□ -0.52
HDAC6-230ENST00000488543 CIB1Q99828 191 aa11.82□□□□□ -0.52
HDAC6-230ENST00000488543 NTMT1Q9BV86 223 aa11.82□□□□□ -0.52
HDAC6-230ENST00000488543 TRIM54Q9BYV2 358 aa11.82□□□□□ -0.52
HDAC6-230ENST00000488543 MRGBPQ9NV56 204 aa11.82□□□□□ -0.52
HDAC6-230ENST00000488543 PRKAB1Q9Y478 270 aa11.82□□□□□ -0.52
HDAC6-230ENST00000488543 SNX13Q9Y5W8 968 aa11.82□□□□□ -0.52
HDAC6-230ENST00000488543 KNL1Q8NG31 2342 aa11.81□□□□□ -0.52
HDAC6-230ENST00000488543 hCG_2014768A0A024R1R8 64 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms