RNA–Protein interactions for RNA: ENST00000487739.1

CCDC66-221, Transcript of coiled-coil domain containing 66, humanhuman

TSL 3

Gene CCDC66, Length 443 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC66-221ENST00000487739 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP3.18□□□□□ -1.9
CCDC66-221ENST00000487739 SAT2Q96F10 170 aaPredicted RBP3.18□□□□□ -1.9
CCDC66-221ENST00000487739 GKN1Q9NS71 199 aa3.18□□□□□ -1.9
CCDC66-221ENST00000487739 PLAGL1Q9UM63 463 aa3.18□□□□□ -1.9
CCDC66-221ENST00000487739 TRIM17Q9Y577 477 aa3.18□□□□□ -1.9
CCDC66-221ENST00000487739 PCDH11YQ9BZA8 1340 aa3.18□□□□□ -1.9
CCDC66-221ENST00000487739 LOC105371242A0A075B767 164 aa3.17□□□□□ -1.9
CCDC66-221ENST00000487739 A0A087X0M5 115 aa3.17□□□□□ -1.9
CCDC66-221ENST00000487739 A0A1B0GX30 115 aa3.17□□□□□ -1.9
CCDC66-221ENST00000487739 ANKUB1A6NFN9 424 aa3.17□□□□□ -1.9
CCDC66-221ENST00000487739 PI4K2BG5E9Z4 385 aa3.17□□□□□ -1.9
CCDC66-221ENST00000487739 J3KRW8 73 aa3.17□□□□□ -1.9
CCDC66-221ENST00000487739 ZWINTO95229 277 aa3.17□□□□□ -1.9
CCDC66-221ENST00000487739 OR2T7P0C7T2 308 aa3.17□□□□□ -1.9
CCDC66-221ENST00000487739 DUX4L4P0CJ87 422 aa3.17□□□□□ -1.9
CCDC66-221ENST00000487739 CSNK2BP67870 215 aa3.17□□□□□ -1.9
CCDC66-221ENST00000487739 GCNT1Q02742 428 aa3.17□□□□□ -1.9
CCDC66-221ENST00000487739 LMOD3Q0VAK6 560 aa3.17□□□□□ -1.9
CCDC66-221ENST00000487739 TAF10Q12962 218 aa3.17□□□□□ -1.9
CCDC66-221ENST00000487739 MARCH9Q86YJ5 346 aa3.17□□□□□ -1.9
CCDC66-221ENST00000487739 FBXO39Q8N4B4 442 aa3.17□□□□□ -1.9
CCDC66-221ENST00000487739 ATP8B4Q8TF62 1192 aa3.17□□□□□ -1.9
CCDC66-221ENST00000487739 DHX58Q96C10 678 aa3.17□□□□□ -1.9
CCDC66-221ENST00000487739 SMARCAD1Q9H4L7 1026 aa3.17□□□□□ -1.9
CCDC66-221ENST00000487739 GNB4Q9HAV0 340 aa3.17□□□□□ -1.9
CCDC66-221ENST00000487739 CHST11Q9NPF2 352 aa3.17□□□□□ -1.9
CCDC66-221ENST00000487739 EIF2B3Q9NR50 452 aaKnown RBP3.17□□□□□ -1.9
CCDC66-221ENST00000487739 SEPT11Q9NVA2 429 aaKnown RBP3.17□□□□□ -1.9
CCDC66-221ENST00000487739 C19orf25Q9UFG5 118 aaPredicted RBP3.17□□□□□ -1.9
CCDC66-221ENST00000487739 SEC63Q9UGP8 760 aaKnown RBP3.17□□□□□ -1.9
CCDC66-221ENST00000487739 ABCA7Q8IZY2 2146 aa3.16□□□□□ -1.9
CCDC66-221ENST00000487739 RUSC2Q8N2Y8 1516 aa3.16□□□□□ -1.9
CCDC66-221ENST00000487739 SRRM5B3KS81 715 aa3.16□□□□□ -1.9
CCDC66-221ENST00000487739 CREB3O43889 395 aa3.16□□□□□ -1.9
CCDC66-221ENST00000487739 DDHD2O94830 711 aa3.16□□□□□ -1.9
CCDC66-221ENST00000487739 TRUB2O95900 331 aaKnown RBP3.16□□□□□ -1.9
CCDC66-221ENST00000487739 PRG2P13727 222 aa3.16□□□□□ -1.9
CCDC66-221ENST00000487739 GJA1P17302 382 aa3.16□□□□□ -1.9
CCDC66-221ENST00000487739 CSTF2P33240 577 aaKnown RBP eCLIP3.16□□□□□ -1.9
CCDC66-221ENST00000487739 LBX1P52954 281 aa3.16□□□□□ -1.9
CCDC66-221ENST00000487739 PNLIPRP2P54317 469 aa3.16□□□□□ -1.9
CCDC66-221ENST00000487739 ZFP36L1Q07352 338 aaKnown RBP3.16□□□□□ -1.9
CCDC66-221ENST00000487739 ZNF74Q16587 644 aa3.16□□□□□ -1.9
CCDC66-221ENST00000487739 SLC35D3Q5M8T2 416 aa3.16□□□□□ -1.9
CCDC66-221ENST00000487739 CES4AQ5XG92 561 aa3.16□□□□□ -1.9
CCDC66-221ENST00000487739 ADGRA1Q86SQ6 560 aa3.16□□□□□ -1.9
CCDC66-221ENST00000487739 AACSQ86V21 672 aa3.16□□□□□ -1.9
CCDC66-221ENST00000487739 ABHD12Q8N2K0 398 aa3.16□□□□□ -1.9
CCDC66-221ENST00000487739 APOBEC4Q8WW27 367 aaKnown RBP3.16□□□□□ -1.9
CCDC66-221ENST00000487739 TOMM40LQ969M1 308 aa3.16□□□□□ -1.9
CCDC66-221ENST00000487739 CHMP4AQ9BY43 222 aa3.16□□□□□ -1.9
CCDC66-221ENST00000487739 TBC1D17Q9HA65 648 aa3.16□□□□□ -1.9
CCDC66-221ENST00000487739 B3GAT2Q9NPZ5 323 aa3.16□□□□□ -1.9
CCDC66-221ENST00000487739 ZNF510Q9Y2H8 683 aa3.16□□□□□ -1.9
CCDC66-221ENST00000487739 PRRC2AP48634 2157 aaKnown RBP3.16□□□□□ -1.9
CCDC66-221ENST00000487739 CCDC189A1A4V9 331 aa3.15□□□□□ -1.91
CCDC66-221ENST00000487739 PI4KAP2A4QPH2 592 aa3.15□□□□□ -1.91
CCDC66-221ENST00000487739 PGPEP1LA6NFU8 196 aa3.15□□□□□ -1.91
CCDC66-221ENST00000487739 A8MXK9 166 aa3.15□□□□□ -1.91
CCDC66-221ENST00000487739 F5H0A9 414 aaPredicted RBP3.15□□□□□ -1.91
CCDC66-221ENST00000487739 H0YAE9 185 aa3.15□□□□□ -1.91
CCDC66-221ENST00000487739 TFECO14948 347 aaPredicted RBP3.15□□□□□ -1.91
CCDC66-221ENST00000487739 PAPSS1O43252 624 aaPredicted RBP3.15□□□□□ -1.91
CCDC66-221ENST00000487739 CD4P01730 458 aa3.15□□□□□ -1.91
CCDC66-221ENST00000487739 DARSP14868 501 aaKnown RBP3.15□□□□□ -1.91
CCDC66-221ENST00000487739 IL4RP24394 825 aa3.15□□□□□ -1.91
CCDC66-221ENST00000487739 MAPK4P31152 587 aa3.15□□□□□ -1.91
CCDC66-221ENST00000487739 SLC15A1P46059 708 aa3.15□□□□□ -1.91
CCDC66-221ENST00000487739 ZNF415Q09FC8 603 aa3.15□□□□□ -1.91
CCDC66-221ENST00000487739 MTF1Q14872 753 aa3.15□□□□□ -1.91
CCDC66-221ENST00000487739 UGT3A1Q6NUS8 523 aa3.15□□□□□ -1.91
CCDC66-221ENST00000487739 TMEM173Q86WV6 379 aaPredicted RBP3.15□□□□□ -1.91
CCDC66-221ENST00000487739 CEP57Q86XR8 500 aa3.15□□□□□ -1.91
CCDC66-221ENST00000487739 TTC39CQ8N584 583 aa3.15□□□□□ -1.91
CCDC66-221ENST00000487739 CHPT1Q8WUD6 406 aa3.15□□□□□ -1.91
CCDC66-221ENST00000487739 SSMEM1Q8WWF3 244 aa3.15□□□□□ -1.91
CCDC66-221ENST00000487739 SPAG5Q96R06 1193 aa3.15□□□□□ -1.91
CCDC66-221ENST00000487739 LGMNQ99538 433 aa3.15□□□□□ -1.91
CCDC66-221ENST00000487739 PANK2Q9BZ23 570 aa3.15□□□□□ -1.91
CCDC66-221ENST00000487739 ARHGEF38Q9NXL2 777 aa3.15□□□□□ -1.91
CCDC66-221ENST00000487739 PSD3Q9NYI0 1048 aa3.15□□□□□ -1.91
CCDC66-221ENST00000487739 CTSZQ9UBR2 303 aa3.15□□□□□ -1.91
CCDC66-221ENST00000487739 WIPI2Q9Y4P8 454 aa3.15□□□□□ -1.91
CCDC66-221ENST00000487739 CROCCQ5TZA2 2017 aa3.14□□□□□ -1.91
CCDC66-221ENST00000487739 B4DLN1 442 aa3.14□□□□□ -1.91
CCDC66-221ENST00000487739 USO1O60763 962 aaKnown RBP3.14□□□□□ -1.91
CCDC66-221ENST00000487739 MBD4O95243 580 aa3.14□□□□□ -1.91
CCDC66-221ENST00000487739 HOXD4P09016 255 aaPredicted RBP3.14□□□□□ -1.91
CCDC66-221ENST00000487739 FOLR2P14207 255 aa3.14□□□□□ -1.91
CCDC66-221ENST00000487739 JAK1P23458 1154 aa3.14□□□□□ -1.91
CCDC66-221ENST00000487739 CAPGP40121 348 aa3.14□□□□□ -1.91
CCDC66-221ENST00000487739 HADHAP40939 763 aa3.14□□□□□ -1.91
CCDC66-221ENST00000487739 ZFP36L2P47974 494 aaKnown RBP3.14□□□□□ -1.91
CCDC66-221ENST00000487739 MRPL12P52815 198 aaKnown RBP3.14□□□□□ -1.91
CCDC66-221ENST00000487739 IRF3Q14653 427 aa3.14□□□□□ -1.91
CCDC66-221ENST00000487739 GDPGP1Q6ZNW5 385 aa3.14□□□□□ -1.91
CCDC66-221ENST00000487739 EXD1Q8NHP7 514 aa3.14□□□□□ -1.91
CCDC66-221ENST00000487739 C11orf45Q8TAV5 145 aa3.14□□□□□ -1.91
CCDC66-221ENST00000487739 PDLIM5Q96HC4 596 aaKnown RBP3.14□□□□□ -1.91
CCDC66-221ENST00000487739 MMP27Q9H306 513 aa3.14□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms