RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 DEFB110Q30KQ9 67 aa14.24□□□□□ -0.13
USP4-212ENST00000486549 KBTBD12Q3ZCT8 623 aa14.24□□□□□ -0.13
USP4-212ENST00000486549 SOWAHCQ53LP3 525 aaPredicted RBP14.24□□□□□ -0.13
USP4-212ENST00000486549 LRRC8EQ6NSJ5 796 aa14.24□□□□□ -0.13
USP4-212ENST00000486549 PPM1NQ8N819 430 aa14.24□□□□□ -0.13
USP4-212ENST00000486549 ASB11Q8WXH4 323 aa14.24□□□□□ -0.13
USP4-212ENST00000486549 SLC22A18Q96BI1 424 aa14.24□□□□□ -0.13
USP4-212ENST00000486549 VPS39Q96JC1 886 aa14.24□□□□□ -0.13
USP4-212ENST00000486549 FMO2Q99518 471 aa14.24□□□□□ -0.13
USP4-212ENST00000486549 CPNE1Q99829 537 aa14.24□□□□□ -0.13
USP4-212ENST00000486549 ABCF3Q9NUQ8 709 aa14.24□□□□□ -0.13
USP4-212ENST00000486549 ADAMTS6Q9UKP5 1117 aa14.24□□□□□ -0.13
USP4-212ENST00000486549 TMEM150CB9EJG8 249 aa14.23□□□□□ -0.13
USP4-212ENST00000486549 IQCJ-SCHIP1C9J366 451 aaPredicted RBP14.23□□□□□ -0.13
USP4-212ENST00000486549 ERVH48-1M5A8F1 160 aa14.23□□□□□ -0.13
USP4-212ENST00000486549 ATXN7O15265 892 aaPredicted RBP14.23□□□□□ -0.13
USP4-212ENST00000486549 SPAG6O75602 509 aa14.23□□□□□ -0.13
USP4-212ENST00000486549 MAGP20916 626 aa14.23□□□□□ -0.13
USP4-212ENST00000486549 OAS2P29728 719 aaKnown RBP14.23□□□□□ -0.13
USP4-212ENST00000486549 IL2P60568 153 aa14.23□□□□□ -0.13
USP4-212ENST00000486549 VAC14Q08AM6 782 aa14.23□□□□□ -0.13
USP4-212ENST00000486549 ZIC1Q15915 447 aa14.23□□□□□ -0.13
USP4-212ENST00000486549 LARP7Q4G0J3 582 aaKnown RBP eCLIP14.23□□□□□ -0.13
USP4-212ENST00000486549 MANEAQ5SRI9 462 aa14.23□□□□□ -0.13
USP4-212ENST00000486549 SUSD1Q6UWL2 747 aa14.23□□□□□ -0.13
USP4-212ENST00000486549 CDHR3Q6ZTQ4 885 aa14.23□□□□□ -0.13
USP4-212ENST00000486549 CEP128Q6ZU80 1094 aa14.23□□□□□ -0.13
USP4-212ENST00000486549 DTX1Q86Y01 620 aa14.23□□□□□ -0.13
USP4-212ENST00000486549 TMEM126BQ8IUX1 230 aa14.23□□□□□ -0.13
USP4-212ENST00000486549 CACNA2D3Q8IZS8 1091 aa14.23□□□□□ -0.13
USP4-212ENST00000486549 IL22RA1Q8N6P7 574 aa14.23□□□□□ -0.13
USP4-212ENST00000486549 PPFIBP2Q8ND30 876 aa14.23□□□□□ -0.13
USP4-212ENST00000486549 SNRNP27Q8WVK2 155 aaKnown RBP14.23□□□□□ -0.13
USP4-212ENST00000486549 N4BP2L2Q92802 583 aaPredicted RBP14.23□□□□□ -0.13
USP4-212ENST00000486549 ZNF501Q96CX3 271 aaPredicted RBP14.23□□□□□ -0.13
USP4-212ENST00000486549 MRRFQ96E11 262 aaKnown RBP14.23□□□□□ -0.13
USP4-212ENST00000486549 WBP1Q96G27 269 aa14.23□□□□□ -0.13
USP4-212ENST00000486549 RBBP8Q99708 897 aa14.23□□□□□ -0.13
USP4-212ENST00000486549 ACAT2Q9BWD1 397 aa14.23□□□□□ -0.13
USP4-212ENST00000486549 FAM129AQ9BZQ8 928 aa14.23□□□□□ -0.13
USP4-212ENST00000486549 TWSG1Q9GZX9 223 aa14.23□□□□□ -0.13
USP4-212ENST00000486549 CAB39LQ9H9S4 337 aa14.23□□□□□ -0.13
USP4-212ENST00000486549 CPNE5Q9HCH3 593 aa14.23□□□□□ -0.13
USP4-212ENST00000486549 NINJ2Q9NZG7 142 aa14.23□□□□□ -0.13
USP4-212ENST00000486549 PILRAQ9UKJ1 303 aa14.23□□□□□ -0.13
USP4-212ENST00000486549 MTO1Q9Y2Z2 717 aaKnown RBP14.23□□□□□ -0.13
USP4-212ENST00000486549 PTPRQQ9UMZ3 2332 aa14.23□□□□□ -0.13
USP4-212ENST00000486549 PCM1Q15154 2024 aa14.22□□□□□ -0.13
USP4-212ENST00000486549 NBEAQ8NFP9 2946 aa14.22□□□□□ -0.13
USP4-212ENST00000486549 GFYI3L273 518 aa14.22□□□□□ -0.13
USP4-212ENST00000486549 FAM155BO75949 473 aa14.22□□□□□ -0.13
USP4-212ENST00000486549 DLGAP3O95886 979 aa14.22□□□□□ -0.13
USP4-212ENST00000486549 SLC16A8O95907 504 aa14.22□□□□□ -0.13
USP4-212ENST00000486549 C1QAP02745 245 aa14.22□□□□□ -0.13
USP4-212ENST00000486549 C8GP07360 202 aa14.22□□□□□ -0.13
USP4-212ENST00000486549 SPTBP11277 2137 aa14.22□□□□□ -0.13
USP4-212ENST00000486549 CYP2A7P20853 494 aa14.22□□□□□ -0.13
USP4-212ENST00000486549 ECHS1P30084 290 aa14.22□□□□□ -0.13
USP4-212ENST00000486549 GP5P40197 560 aa14.22□□□□□ -0.13
USP4-212ENST00000486549 PNLIPRP1P54315 467 aa14.22□□□□□ -0.13
USP4-212ENST00000486549 SLC12A2P55011 1212 aa14.22□□□□□ -0.13
USP4-212ENST00000486549 TAS2R39P59534 338 aa14.22□□□□□ -0.13
USP4-212ENST00000486549 CYP2A13Q16696 494 aa14.22□□□□□ -0.13
USP4-212ENST00000486549 UBAP2Q5T6F2 1119 aaKnown RBP14.22□□□□□ -0.13
USP4-212ENST00000486549 PWWP2BQ6NUJ5 590 aa14.22□□□□□ -0.13
USP4-212ENST00000486549 CCDC81Q6ZN84 652 aa14.22□□□□□ -0.13
USP4-212ENST00000486549 CYS1Q717R9 158 aa14.22□□□□□ -0.13
USP4-212ENST00000486549 TIPARPQ7Z3E1 657 aaKnown RBP14.22□□□□□ -0.13
USP4-212ENST00000486549 SYTL1Q8IYJ3 562 aa14.22□□□□□ -0.13
USP4-212ENST00000486549 NLGN4XQ8N0W4 816 aa14.22□□□□□ -0.13
USP4-212ENST00000486549 GALNT6Q8NCL4 622 aa14.22□□□□□ -0.13
USP4-212ENST00000486549 FBXO15Q8NCQ5 510 aaPredicted RBP14.22□□□□□ -0.13
USP4-212ENST00000486549 NLGN4YQ8NFZ3 816 aaPredicted RBP14.22□□□□□ -0.13
USP4-212ENST00000486549 OR1L3Q8NH93 324 aa14.22□□□□□ -0.13
USP4-212ENST00000486549 HMGCLL1Q8TB92 370 aa14.22□□□□□ -0.13
USP4-212ENST00000486549 DLG3Q92796 817 aa14.22□□□□□ -0.13
USP4-212ENST00000486549 NKD1Q969G9 470 aa14.22□□□□□ -0.13
USP4-212ENST00000486549 TCTN2Q96GX1 697 aa14.22□□□□□ -0.13
USP4-212ENST00000486549 CCNL2Q96S94 520 aaPredicted RBP14.22□□□□□ -0.13
USP4-212ENST00000486549 MIPEPQ99797 713 aa14.22□□□□□ -0.13
USP4-212ENST00000486549 CDC42EP4Q9H3Q1 356 aaKnown RBP14.22□□□□□ -0.13
USP4-212ENST00000486549 FAM60AQ9NP50 221 aa14.22□□□□□ -0.13
USP4-212ENST00000486549 NFU1Q9UMS0 254 aa14.22□□□□□ -0.13
USP4-212ENST00000486549 SSUH2Q9Y2M2 353 aa14.22□□□□□ -0.13
USP4-212ENST00000486549 TMEM184BQ9Y519 407 aaPredicted RBP14.22□□□□□ -0.13
USP4-212ENST00000486549 A0A1W2PPV9 198 aa14.21□□□□□ -0.13
USP4-212ENST00000486549 PABPN1LA6NDY0 278 aaKnown RBP14.21□□□□□ -0.13
USP4-212ENST00000486549 ZNF839A8K0R7 811 aa14.21□□□□□ -0.13
USP4-212ENST00000486549 SCRG1O75711 98 aa14.21□□□□□ -0.13
USP4-212ENST00000486549 ACSL3O95573 720 aa14.21□□□□□ -0.13
USP4-212ENST00000486549 TSPAN12O95859 305 aa14.21□□□□□ -0.13
USP4-212ENST00000486549 NTRK1P04629 796 aa14.21□□□□□ -0.13
USP4-212ENST00000486549 ERGP11308 486 aa14.21□□□□□ -0.13
USP4-212ENST00000486549 ZNF37AP17032 561 aaPredicted RBP14.21□□□□□ -0.13
USP4-212ENST00000486549 PHBP35232 272 aa14.21□□□□□ -0.13
USP4-212ENST00000486549 RPA3P35244 121 aaPredicted RBP14.21□□□□□ -0.13
USP4-212ENST00000486549 SP140Q13342 867 aa14.21□□□□□ -0.13
USP4-212ENST00000486549 USP10Q14694 798 aaKnown RBP14.21□□□□□ -0.13
USP4-212ENST00000486549 SLMAPQ14BN4 828 aa14.21□□□□□ -0.13
USP4-212ENST00000486549 ARHGAP19Q14CB8 494 aa14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms