RNA–Protein interactions for RNA: ENST00000485994.5

VPS50-218, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 573 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-218ENST00000485994 ZIC1Q15915 447 aa6.75□□□□□ -1.33
VPS50-218ENST00000485994 CYP2A13Q16696 494 aa6.75□□□□□ -1.33
VPS50-218ENST00000485994 UGT8Q16880 541 aa6.75□□□□□ -1.33
VPS50-218ENST00000485994 LONRF1Q17RB8 773 aa6.75□□□□□ -1.33
VPS50-218ENST00000485994 ZC3H12BQ5HYM0 836 aaKnown RBP6.75□□□□□ -1.33
VPS50-218ENST00000485994 YOD1Q5VVQ6 348 aaPredicted RBP6.75□□□□□ -1.33
VPS50-218ENST00000485994 ZNF385CQ66K41 422 aaPredicted RBP6.75□□□□□ -1.33
VPS50-218ENST00000485994 RHBDD2Q6NTF9 364 aa6.75□□□□□ -1.33
VPS50-218ENST00000485994 TLDC1Q6P9B6 456 aa6.75□□□□□ -1.33
VPS50-218ENST00000485994 CES3Q6UWW8 571 aa6.75□□□□□ -1.33
VPS50-218ENST00000485994 NAPRTQ6XQN6 538 aa6.75□□□□□ -1.33
VPS50-218ENST00000485994 CYHR1Q6ZMK1 362 aa6.75□□□□□ -1.33
VPS50-218ENST00000485994 KIAA0408Q6ZU52 694 aa6.75□□□□□ -1.33
VPS50-218ENST00000485994 TMEM126BQ8IUX1 230 aa6.75□□□□□ -1.33
VPS50-218ENST00000485994 UNC5BQ8IZJ1 945 aa6.75□□□□□ -1.33
VPS50-218ENST00000485994 KRT222Q8N1A0 295 aa6.75□□□□□ -1.33
VPS50-218ENST00000485994 AGGF1Q8N302 714 aaeCLIP6.75□□□□□ -1.33
VPS50-218ENST00000485994 C19orf47Q8N9M1 422 aaKnown RBP6.75□□□□□ -1.33
VPS50-218ENST00000485994 LINC01555Q8NAE3 123 aa6.75□□□□□ -1.33
VPS50-218ENST00000485994 GSDMBQ8TAX9 411 aa6.75□□□□□ -1.33
VPS50-218ENST00000485994 LKAAEAR1Q8TD35 194 aa6.75□□□□□ -1.33
VPS50-218ENST00000485994 KCNJ9Q92806 393 aa6.75□□□□□ -1.33
VPS50-218ENST00000485994 EBNA1BP2Q99848 306 aaKnown RBP6.75□□□□□ -1.33
VPS50-218ENST00000485994 C17orf62Q9BQA9 187 aa6.75□□□□□ -1.33
VPS50-218ENST00000485994 HGH1Q9BTY7 390 aa6.75□□□□□ -1.33
VPS50-218ENST00000485994 AKIRIN1Q9H9L7 192 aaPredicted RBP6.75□□□□□ -1.33
VPS50-218ENST00000485994 FAM60AQ9NP50 221 aa6.75□□□□□ -1.33
VPS50-218ENST00000485994 PCMTD2Q9NV79 361 aa6.75□□□□□ -1.33
VPS50-218ENST00000485994 INTS7Q9NVH2 962 aaKnown RBP6.75□□□□□ -1.33
VPS50-218ENST00000485994 SOHLH2Q9NX45 425 aa6.75□□□□□ -1.33
VPS50-218ENST00000485994 TRMT1Q9NXH9 659 aaKnown RBP6.75□□□□□ -1.33
VPS50-218ENST00000485994 SPHK1Q9NYA1 384 aa6.75□□□□□ -1.33
VPS50-218ENST00000485994 SPATA7Q9P0W8 599 aa6.75□□□□□ -1.33
VPS50-218ENST00000485994 LNPEPQ9UIQ6 1025 aa6.75□□□□□ -1.33
VPS50-218ENST00000485994 PLCL2Q9UPR0 1127 aa6.75□□□□□ -1.33
VPS50-218ENST00000485994 TDRKHQ9Y2W6 561 aaKnown RBP6.75□□□□□ -1.33
VPS50-218ENST00000485994 SAR1BQ9Y6B6 198 aa6.75□□□□□ -1.33
VPS50-218ENST00000485994 DOCK10Q96BY6 2186 aa6.75□□□□□ -1.33
VPS50-218ENST00000485994 FITM1A5D6W6 292 aa6.74□□□□□ -1.33
VPS50-218ENST00000485994 ISM1B1AKI9 464 aa6.74□□□□□ -1.33
VPS50-218ENST00000485994 TMEM150CB9EJG8 249 aa6.74□□□□□ -1.33
VPS50-218ENST00000485994 NDC80O14777 642 aa6.74□□□□□ -1.33
VPS50-218ENST00000485994 ZNF749O43361 778 aa6.74□□□□□ -1.33
VPS50-218ENST00000485994 SUV39H1O43463 412 aa6.74□□□□□ -1.33
VPS50-218ENST00000485994 ALBP02768 609 aa6.74□□□□□ -1.33
VPS50-218ENST00000485994 ENO3P13929 434 aaPredicted RBP6.74□□□□□ -1.33
VPS50-218ENST00000485994 CHRM3P20309 590 aa6.74□□□□□ -1.33
VPS50-218ENST00000485994 CYP2A7P20853 494 aa6.74□□□□□ -1.33
VPS50-218ENST00000485994 OAS2P29728 719 aaKnown RBP6.74□□□□□ -1.33
VPS50-218ENST00000485994 PAFAH1B1P43034 410 aa6.74□□□□□ -1.33
VPS50-218ENST00000485994 VPS41P49754 854 aa6.74□□□□□ -1.33
VPS50-218ENST00000485994 ARSFP54793 590 aa6.74□□□□□ -1.33
VPS50-218ENST00000485994 EIF3BP55884 814 aaKnown RBP6.74□□□□□ -1.33
VPS50-218ENST00000485994 POLE2P56282 527 aa6.74□□□□□ -1.33
VPS50-218ENST00000485994 GNG11P61952 73 aa6.74□□□□□ -1.33
VPS50-218ENST00000485994 ILF2Q12905 390 aaKnown RBP6.74□□□□□ -1.33
VPS50-218ENST00000485994 KCNAB2Q13303 367 aa6.74□□□□□ -1.33
VPS50-218ENST00000485994 ERV3-1Q14264 604 aa6.74□□□□□ -1.33
VPS50-218ENST00000485994 SSPNQ14714 243 aa6.74□□□□□ -1.33
VPS50-218ENST00000485994 MORF4L2Q15014 288 aa6.74□□□□□ -1.33
VPS50-218ENST00000485994 PPP1R7Q15435 360 aa6.74□□□□□ -1.33
VPS50-218ENST00000485994 TCTE1Q5JU00 501 aa6.74□□□□□ -1.33
VPS50-218ENST00000485994 TCTN3Q6NUS6 607 aa6.74□□□□□ -1.33
VPS50-218ENST00000485994 UGT3A1Q6NUS8 523 aa6.74□□□□□ -1.33
VPS50-218ENST00000485994 CASC4Q6P4E1 433 aa6.74□□□□□ -1.33
VPS50-218ENST00000485994 ZNF549Q6P9A3 640 aa6.74□□□□□ -1.33
VPS50-218ENST00000485994 FAM199XQ6PEV8 388 aaPredicted RBP6.74□□□□□ -1.33
VPS50-218ENST00000485994 FBXO38Q6PIJ6 1188 aa6.74□□□□□ -1.33
VPS50-218ENST00000485994 FIGLAQ6QHK4 219 aa6.74□□□□□ -1.33
VPS50-218ENST00000485994 CYS1Q717R9 158 aa6.74□□□□□ -1.33
VPS50-218ENST00000485994 CNTN4Q8IWV2 1026 aa6.74□□□□□ -1.33
VPS50-218ENST00000485994 GPR135Q8IZ08 494 aa6.74□□□□□ -1.33
VPS50-218ENST00000485994 RAB42Q8N4Z0 105 aa6.74□□□□□ -1.33
VPS50-218ENST00000485994 SERBP1Q8NC51 408 aaKnown RBP eCLIP6.74□□□□□ -1.33
VPS50-218ENST00000485994 OR2A1Q8NGT9 310 aa6.74□□□□□ -1.33
VPS50-218ENST00000485994 OR9A1PQ8NGU1 263 aa6.74□□□□□ -1.33
VPS50-218ENST00000485994 PROKR1Q8TCW9 393 aa6.74□□□□□ -1.33
VPS50-218ENST00000485994 ADAMTS17Q8TE56 1095 aa6.74□□□□□ -1.33
VPS50-218ENST00000485994 CT55Q8WUE5 264 aa6.74□□□□□ -1.33
VPS50-218ENST00000485994 ASB11Q8WXH4 323 aa6.74□□□□□ -1.33
VPS50-218ENST00000485994 INPP5DQ92835 1189 aa6.74□□□□□ -1.33
VPS50-218ENST00000485994 ELMO2Q96JJ3 720 aa6.74□□□□□ -1.33
VPS50-218ENST00000485994 IP6K3Q96PC2 410 aa6.74□□□□□ -1.33
VPS50-218ENST00000485994 NAPGQ99747 312 aaPredicted RBP6.74□□□□□ -1.33
VPS50-218ENST00000485994 NRTNQ99748 197 aa6.74□□□□□ -1.33
VPS50-218ENST00000485994 FAM167BQ9BTA0 163 aa6.74□□□□□ -1.33
VPS50-218ENST00000485994 ACTL8Q9H568 366 aa6.74□□□□□ -1.33
VPS50-218ENST00000485994 ACTR5Q9H9F9 607 aaPredicted RBP6.74□□□□□ -1.33
VPS50-218ENST00000485994 MLXIPLQ9NP71 852 aa6.74□□□□□ -1.33
VPS50-218ENST00000485994 IL1RAPL1Q9NZN1 696 aa6.74□□□□□ -1.33
VPS50-218ENST00000485994 ANKMY1Q9P2S6 941 aa6.74□□□□□ -1.33
VPS50-218ENST00000485994 FBXO5Q9UKT4 447 aa6.74□□□□□ -1.33
VPS50-218ENST00000485994 SLC39A10Q9ULF5 831 aa6.74□□□□□ -1.33
VPS50-218ENST00000485994 SRPK3Q9UPE1 567 aa6.74□□□□□ -1.33
VPS50-218ENST00000485994 CRYL1Q9Y2S2 319 aa6.74□□□□□ -1.33
VPS50-218ENST00000485994 MED16Q9Y2X0 877 aa6.74□□□□□ -1.33
VPS50-218ENST00000485994 PCDHGB7Q9Y5F8 929 aa6.74□□□□□ -1.33
VPS50-218ENST00000485994 MRPS18BQ9Y676 258 aaKnown RBP6.74□□□□□ -1.33
VPS50-218ENST00000485994 MYO18BQ8IUG5 2567 aa6.73□□□□□ -1.33
VPS50-218ENST00000485994 A0A1W2PPV9 198 aa6.73□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms