RNA–Protein interactions for RNA: ENST00000484581.6

VPS13A-211, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2 BASIC

Gene VPS13A, Length 1,155 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-211ENST00000484581 SERINC1Q9NRX5 453 aa4.27□□□□□ -1.73
VPS13A-211ENST00000484581 ACTR3BQ9P1U1 418 aa4.27□□□□□ -1.73
VPS13A-211ENST00000484581 B3GAT1Q9P2W7 334 aa4.27□□□□□ -1.73
VPS13A-211ENST00000484581 LRWD1Q9UFC0 647 aa4.27□□□□□ -1.73
VPS13A-211ENST00000484581 MAD2L2Q9UI95 211 aa4.27□□□□□ -1.73
VPS13A-211ENST00000484581 GMEB2Q9UKD1 530 aa4.27□□□□□ -1.73
VPS13A-211ENST00000484581 ATP6V0A2Q9Y487 856 aa4.27□□□□□ -1.73
VPS13A-211ENST00000484581 SNX9Q9Y5X1 595 aa4.27□□□□□ -1.73
VPS13A-211ENST00000484581 HEG1Q9ULI3 1381 aa4.27□□□□□ -1.73
VPS13A-211ENST00000484581 PCDH11YQ9BZA8 1340 aa4.26□□□□□ -1.73
VPS13A-211ENST00000484581 FAM149AA5PLN7 773 aa4.26□□□□□ -1.73
VPS13A-211ENST00000484581 C5orf51A6NDU8 294 aa4.26□□□□□ -1.73
VPS13A-211ENST00000484581 LILRA5A6NI73 299 aa4.26□□□□□ -1.73
VPS13A-211ENST00000484581 OR6C75A6NL08 312 aa4.26□□□□□ -1.73
VPS13A-211ENST00000484581 CACNB4O00305 520 aaPredicted RBP4.26□□□□□ -1.73
VPS13A-211ENST00000484581 PRAF2O60831 178 aa4.26□□□□□ -1.73
VPS13A-211ENST00000484581 RNASEH1O60930 286 aaKnown RBP4.26□□□□□ -1.73
VPS13A-211ENST00000484581 SBK2P0C263 348 aa4.26□□□□□ -1.73
VPS13A-211ENST00000484581 FAM106CPP0CH98 169 aa4.26□□□□□ -1.73
VPS13A-211ENST00000484581 PRF1P14222 555 aa4.26□□□□□ -1.73
VPS13A-211ENST00000484581 HOXB2P14652 356 aa4.26□□□□□ -1.73
VPS13A-211ENST00000484581 CSF2RAP15509 400 aa4.26□□□□□ -1.73
VPS13A-211ENST00000484581 TMPOP42166 694 aaKnown RBP4.26□□□□□ -1.73
VPS13A-211ENST00000484581 SERPINH1P50454 418 aaKnown RBP4.26□□□□□ -1.73
VPS13A-211ENST00000484581 UCP2P55851 309 aa4.26□□□□□ -1.73
VPS13A-211ENST00000484581 GSDMDP57764 484 aa4.26□□□□□ -1.73
VPS13A-211ENST00000484581 TRA2AQ13595 282 aaKnown RBP eCLIP4.26□□□□□ -1.73
VPS13A-211ENST00000484581 VEZF1Q14119 521 aa4.26□□□□□ -1.73
VPS13A-211ENST00000484581 ZNF234Q14588 700 aa4.26□□□□□ -1.73
VPS13A-211ENST00000484581 PDK1Q15118 436 aa4.26□□□□□ -1.73
VPS13A-211ENST00000484581 MCMDC2Q4G0Z9 681 aa4.26□□□□□ -1.73
VPS13A-211ENST00000484581 LRRC38Q5VT99 294 aa4.26□□□□□ -1.73
VPS13A-211ENST00000484581 TRNP1Q6NT89 227 aa4.26□□□□□ -1.73
VPS13A-211ENST00000484581 PRSS55Q6UWB4 352 aaPredicted RBP4.26□□□□□ -1.73
VPS13A-211ENST00000484581 BTNL8Q6UX41 500 aa4.26□□□□□ -1.73
VPS13A-211ENST00000484581 PRSS42Q7Z5A4 293 aa4.26□□□□□ -1.73
VPS13A-211ENST00000484581 ZNF410Q86VK4 478 aa4.26□□□□□ -1.73
VPS13A-211ENST00000484581 AMIGO1Q86WK6 493 aa4.26□□□□□ -1.73
VPS13A-211ENST00000484581 TMPRSS12Q86WS5 348 aa4.26□□□□□ -1.73
VPS13A-211ENST00000484581 NUDT13Q86X67 352 aa4.26□□□□□ -1.73
VPS13A-211ENST00000484581 SERPINA12Q8IW75 414 aa4.26□□□□□ -1.73
VPS13A-211ENST00000484581 AQP12AQ8IXF9 295 aa4.26□□□□□ -1.73
VPS13A-211ENST00000484581 KLHDC8AQ8IYD2 350 aa4.26□□□□□ -1.73
VPS13A-211ENST00000484581 CFAP206Q8IYR0 622 aa4.26□□□□□ -1.73
VPS13A-211ENST00000484581 RNF113BQ8IZP6 322 aaKnown RBP4.26□□□□□ -1.73
VPS13A-211ENST00000484581 NANOGP1Q8N7R0 232 aa4.26□□□□□ -1.73
VPS13A-211ENST00000484581 L3MBTL4Q8NA19 623 aa4.26□□□□□ -1.73
VPS13A-211ENST00000484581 THAP8Q8NA92 274 aa4.26□□□□□ -1.73
VPS13A-211ENST00000484581 CNNM3Q8NE01 707 aa4.26□□□□□ -1.73
VPS13A-211ENST00000484581 SPATA22Q8NHS9 363 aa4.26□□□□□ -1.73
VPS13A-211ENST00000484581 URGCPQ8TCY9 931 aa4.26□□□□□ -1.73
VPS13A-211ENST00000484581 RNF128Q8TEB7 428 aa4.26□□□□□ -1.73
VPS13A-211ENST00000484581 MTBPQ96DY7 904 aa4.26□□□□□ -1.73
VPS13A-211ENST00000484581 TSGA13Q96PP4 275 aa4.26□□□□□ -1.73
VPS13A-211ENST00000484581 OR1F2PQ96R84 312 aa4.26□□□□□ -1.73
VPS13A-211ENST00000484581 CSF3RQ99062 836 aa4.26□□□□□ -1.73
VPS13A-211ENST00000484581 SLC2A11Q9BYW1 496 aa4.26□□□□□ -1.73
VPS13A-211ENST00000484581 KRT23Q9C075 422 aa4.26□□□□□ -1.73
VPS13A-211ENST00000484581 VN1R1Q9GZP7 353 aa4.26□□□□□ -1.73
VPS13A-211ENST00000484581 ARRDC1-AS1Q9H2J1 176 aa4.26□□□□□ -1.73
VPS13A-211ENST00000484581 SNX25Q9H3E2 840 aa4.26□□□□□ -1.73
VPS13A-211ENST00000484581 EBF3Q9H4W6 596 aa4.26□□□□□ -1.73
VPS13A-211ENST00000484581 Q9H8V8 135 aa4.26□□□□□ -1.73
VPS13A-211ENST00000484581 TCP11L1Q9NUJ3 509 aa4.26□□□□□ -1.73
VPS13A-211ENST00000484581 TRMT6Q9UJA5 497 aaKnown RBP4.26□□□□□ -1.73
VPS13A-211ENST00000484581 BLOC1S6Q9UL45 172 aa4.26□□□□□ -1.73
VPS13A-211ENST00000484581 PTGDR2Q9Y5Y4 395 aa4.26□□□□□ -1.73
VPS13A-211ENST00000484581 CNTNAP2Q9UHC6 1331 aa4.25□□□□□ -1.73
VPS13A-211ENST00000484581 TRBV2A0A0J9YWF9 115 aa4.25□□□□□ -1.73
VPS13A-211ENST00000484581 ZCWPW2A0A1B0GU75 182 aa4.25□□□□□ -1.73
VPS13A-211ENST00000484581 A0A1B0GVT2 93 aa4.25□□□□□ -1.73
VPS13A-211ENST00000484581 TNFRSF13BO14836 293 aaPredicted RBP4.25□□□□□ -1.73
VPS13A-211ENST00000484581 MID1O15344 667 aa4.25□□□□□ -1.73
VPS13A-211ENST00000484581 ATP9AO75110 1047 aa4.25□□□□□ -1.73
VPS13A-211ENST00000484581 RPS6KA5O75582 802 aa4.25□□□□□ -1.73
VPS13A-211ENST00000484581 ANKRD34CP0C6C1 535 aa4.25□□□□□ -1.73
VPS13A-211ENST00000484581 SMIM18P0DKX4 95 aa4.25□□□□□ -1.73
VPS13A-211ENST00000484581 IRF2P14316 349 aa4.25□□□□□ -1.73
VPS13A-211ENST00000484581 MYOD1P15172 320 aa4.25□□□□□ -1.73
VPS13A-211ENST00000484581 GM2AP17900 193 aa4.25□□□□□ -1.73
VPS13A-211ENST00000484581 CCNA2P20248 432 aa4.25□□□□□ -1.73
VPS13A-211ENST00000484581 AHCYP23526 432 aa4.25□□□□□ -1.73
VPS13A-211ENST00000484581 PIK3R1P27986 724 aa4.25□□□□□ -1.73
VPS13A-211ENST00000484581 CCKBRP32239 447 aa4.25□□□□□ -1.73
VPS13A-211ENST00000484581 HTR6P50406 440 aa4.25□□□□□ -1.73
VPS13A-211ENST00000484581 ATXN3P54252 364 aaPredicted RBP4.25□□□□□ -1.73
VPS13A-211ENST00000484581 ABATP80404 500 aa4.25□□□□□ -1.73
VPS13A-211ENST00000484581 HTD2P86397 168 aa4.25□□□□□ -1.73
VPS13A-211ENST00000484581 EEF1A2Q05639 463 aaKnown RBP4.25□□□□□ -1.73
VPS13A-211ENST00000484581 GFPT1Q06210 699 aaPredicted RBP4.25□□□□□ -1.73
VPS13A-211ENST00000484581 ZNF155Q12901 538 aaPredicted RBP4.25□□□□□ -1.73
VPS13A-211ENST00000484581 ILF2Q12905 390 aaKnown RBP4.25□□□□□ -1.73
VPS13A-211ENST00000484581 PRKAA1Q13131 559 aa4.25□□□□□ -1.73
VPS13A-211ENST00000484581 TAF7Q15545 349 aaPredicted RBP4.25□□□□□ -1.73
VPS13A-211ENST00000484581 CALCRLQ16602 461 aa4.25□□□□□ -1.73
VPS13A-211ENST00000484581 CA9Q16790 459 aa4.25□□□□□ -1.73
VPS13A-211ENST00000484581 TDRD12Q587J7 1177 aaKnown RBP4.25□□□□□ -1.73
VPS13A-211ENST00000484581 XKR9Q5GH70 373 aa4.25□□□□□ -1.73
VPS13A-211ENST00000484581 NDUFAF5Q5TEU4 345 aa4.25□□□□□ -1.73
VPS13A-211ENST00000484581 SUSD4Q5VX71 490 aa4.25□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms