RNA–Protein interactions for RNA: ENST00000482399.5

VPS52-218, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2 BASIC

Gene VPS52, Length 3,338 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-218ENST00000482399 DOK1Q99704 481 aa12.41□□□□□ -0.42
VPS52-218ENST00000482399 ZNF556Q9HAH1 456 aa12.41□□□□□ -0.42
VPS52-218ENST00000482399 SPASTQ9UBP0 616 aa12.41□□□□□ -0.42
VPS52-218ENST00000482399 RGPD3A6NKT7 1758 aaPredicted RBP12.41□□□□□ -0.42
VPS52-218ENST00000482399 RGPD4Q7Z3J3 1758 aa12.41□□□□□ -0.42
VPS52-218ENST00000482399 FPGTO14772 594 aa12.4□□□□□ -0.42
VPS52-218ENST00000482399 INHBBP09529 407 aa12.4□□□□□ -0.42
VPS52-218ENST00000482399 ENGP17813 658 aa12.4□□□□□ -0.42
VPS52-218ENST00000482399 CD40LGP29965 261 aa12.4□□□□□ -0.42
VPS52-218ENST00000482399 PRIM2P49643 509 aa12.4□□□□□ -0.42
VPS52-218ENST00000482399 CREMQ03060 361 aa12.4□□□□□ -0.42
VPS52-218ENST00000482399 SMARCB1Q12824 385 aa12.4□□□□□ -0.42
VPS52-218ENST00000482399 MAD2L1Q13257 205 aaPredicted RBP12.4□□□□□ -0.42
VPS52-218ENST00000482399 RFX4Q33E94 735 aa12.4□□□□□ -0.42
VPS52-218ENST00000482399 VARS2Q5ST30 1063 aaKnown RBP12.4□□□□□ -0.42
VPS52-218ENST00000482399 DESI1Q6ICB0 168 aa12.4□□□□□ -0.42
VPS52-218ENST00000482399 FAM171BQ6P995 826 aa12.4□□□□□ -0.42
VPS52-218ENST00000482399 SUSD1Q6UWL2 747 aa12.4□□□□□ -0.42
VPS52-218ENST00000482399 CCDC117Q8IWD4 279 aaPredicted RBP12.4□□□□□ -0.42
VPS52-218ENST00000482399 TSPEARQ8WU66 669 aa12.4□□□□□ -0.42
VPS52-218ENST00000482399 NLE1Q9NVX2 485 aaPredicted RBP12.4□□□□□ -0.42
VPS52-218ENST00000482399 THUMPD1Q9NXG2 353 aaKnown RBP12.4□□□□□ -0.42
VPS52-218ENST00000482399 VNN3Q9NY84 501 aa12.4□□□□□ -0.42
VPS52-218ENST00000482399 TAS2R16Q9NYV7 291 aa12.4□□□□□ -0.42
VPS52-218ENST00000482399 NUDT4Q9NZJ9 180 aa12.4□□□□□ -0.42
VPS52-218ENST00000482399 PCDHGA10Q9Y5H3 936 aa12.4□□□□□ -0.42
VPS52-218ENST00000482399 MYO7AQ13402 2215 aa12.4□□□□□ -0.42
VPS52-218ENST00000482399 NINQ8N4C6 2090 aa12.4□□□□□ -0.42
VPS52-218ENST00000482399 CLIC1O00299 241 aa12.4□□□□□ -0.42
VPS52-218ENST00000482399 KPNA5O15131 536 aa12.4□□□□□ -0.42
VPS52-218ENST00000482399 PRSS23O95084 383 aa12.4□□□□□ -0.42
VPS52-218ENST00000482399 IL6P05231 212 aa12.4□□□□□ -0.42
VPS52-218ENST00000482399 CDKN2CP42773 168 aa12.4□□□□□ -0.42
VPS52-218ENST00000482399 MASP1P48740 699 aa12.4□□□□□ -0.42
VPS52-218ENST00000482399 RPIAP49247 311 aa12.4□□□□□ -0.42
VPS52-218ENST00000482399 BTG3Q14201 252 aaPredicted RBP12.4□□□□□ -0.42
VPS52-218ENST00000482399 INO80DQ53TQ3 878 aaPredicted RBP12.4□□□□□ -0.42
VPS52-218ENST00000482399 CTSL3PQ5NE16 218 aa12.4□□□□□ -0.42
VPS52-218ENST00000482399 DDX59Q5T1V6 619 aaKnown RBP eCLIP12.4□□□□□ -0.425e-10■□□□□ 8.6
VPS52-218ENST00000482399 SPOUT1Q5T280 376 aaKnown RBP12.4□□□□□ -0.42
VPS52-218ENST00000482399 C9orf131Q5VYM1 1079 aa12.4□□□□□ -0.42
VPS52-218ENST00000482399 CCBE1Q6UXH8 406 aaPredicted RBP12.4□□□□□ -0.42
VPS52-218ENST00000482399 BEND5Q7L4P6 421 aa12.4□□□□□ -0.42
VPS52-218ENST00000482399 RIMKLAQ8IXN7 391 aa12.4□□□□□ -0.42
VPS52-218ENST00000482399 C10orf111Q8N326 155 aa12.4□□□□□ -0.42
VPS52-218ENST00000482399 TNKS2Q9H2K2 1166 aa12.4□□□□□ -0.42
VPS52-218ENST00000482399 TMEM161AQ9NX61 479 aa12.4□□□□□ -0.42
VPS52-218ENST00000482399 SLC25A37Q9NYZ2 338 aa12.4□□□□□ -0.42
VPS52-218ENST00000482399 FLRT1Q9NZU1 646 aa12.4□□□□□ -0.42
VPS52-218ENST00000482399 SPATA7Q9P0W8 599 aa12.4□□□□□ -0.42
VPS52-218ENST00000482399 DNMT3AQ9Y6K1 912 aaPredicted RBP12.4□□□□□ -0.42
VPS52-218ENST00000482399 BRCA2P51587 3418 aa12.4□□□□□ -0.42
VPS52-218ENST00000482399 PRAMEF12O95522 483 aa12.4□□□□□ -0.42
VPS52-218ENST00000482399 C1QCP02747 245 aa12.4□□□□□ -0.42
VPS52-218ENST00000482399 STSP08842 583 aa12.4□□□□□ -0.42
VPS52-218ENST00000482399 CDH12P55289 794 aa12.4□□□□□ -0.42
VPS52-218ENST00000482399 HUNKP57058 714 aa12.4□□□□□ -0.42
VPS52-218ENST00000482399 YBEYP58557 167 aaPredicted RBP12.4□□□□□ -0.42
VPS52-218ENST00000482399 PPP2R2BQ00005 443 aa12.4□□□□□ -0.42
VPS52-218ENST00000482399 HIST2H2ACQ16777 129 aaPredicted RBP12.4□□□□□ -0.42
VPS52-218ENST00000482399 MANEALQ5VSG8 457 aa12.4□□□□□ -0.42
VPS52-218ENST00000482399 HSH2DQ96JZ2 352 aa12.4□□□□□ -0.42
VPS52-218ENST00000482399 BRINP2Q9C0B6 783 aa12.4□□□□□ -0.42
VPS52-218ENST00000482399 ACTL8Q9H568 366 aa12.4□□□□□ -0.42
VPS52-218ENST00000482399 PRDM5Q9NQX1 630 aaPredicted RBP12.4□□□□□ -0.42
VPS52-218ENST00000482399 TLR9Q9NR96 1032 aa12.4□□□□□ -0.42
VPS52-218ENST00000482399 CD84Q9UIB8 345 aa12.4□□□□□ -0.42
VPS52-218ENST00000482399 SAMD4AQ9UPU9 718 aaKnown RBP12.4□□□□□ -0.42
VPS52-218ENST00000482399 NEU3Q9UQ49 428 aa12.4□□□□□ -0.42
VPS52-218ENST00000482399 ANK1P16157 1881 aa12.39□□□□□ -0.43
VPS52-218ENST00000482399 K7ERQ8 282 aa12.39□□□□□ -0.43
VPS52-218ENST00000482399 SLC28A1O00337 649 aa12.39□□□□□ -0.43
VPS52-218ENST00000482399 ANXA5P08758 320 aa12.39□□□□□ -0.43
VPS52-218ENST00000482399 DGKAP23743 735 aa12.39□□□□□ -0.43
VPS52-218ENST00000482399 PBLDP30039 288 aaPredicted RBP12.39□□□□□ -0.43
VPS52-218ENST00000482399 ATP5C1P36542 298 aaKnown RBP12.39□□□□□ -0.43
VPS52-218ENST00000482399 CTSKP43235 329 aa12.39□□□□□ -0.43
VPS52-218ENST00000482399 CCL23P55773 120 aa12.39□□□□□ -0.43
VPS52-218ENST00000482399 SPIBQ01892 262 aa12.39□□□□□ -0.43
VPS52-218ENST00000482399 CSTF3Q12996 717 aaKnown RBP12.39□□□□□ -0.43
VPS52-218ENST00000482399 GANABQ14697 944 aaKnown RBP12.39□□□□□ -0.43
VPS52-218ENST00000482399 SLC14A2Q15849 920 aa12.39□□□□□ -0.43
VPS52-218ENST00000482399 ZNF691Q5VV52 312 aa12.39□□□□□ -0.43
VPS52-218ENST00000482399 CLECL1Q8IZS7 167 aa12.39□□□□□ -0.43
VPS52-218ENST00000482399 OR8J3Q8NGG0 315 aa12.39□□□□□ -0.43
VPS52-218ENST00000482399 OR6Q1Q8NGQ2 317 aa12.39□□□□□ -0.43
VPS52-218ENST00000482399 DACT3Q96B18 629 aaPredicted RBP12.39□□□□□ -0.43
VPS52-218ENST00000482399 IL4I1Q96RQ9 567 aa12.39□□□□□ -0.43
VPS52-218ENST00000482399 OR51E2Q9H255 320 aa12.39□□□□□ -0.43
VPS52-218ENST00000482399 TP63Q9H3D4 680 aaPredicted RBP12.39□□□□□ -0.43
VPS52-218ENST00000482399 GPR83Q9NYM4 423 aa12.39□□□□□ -0.43
VPS52-218ENST00000482399 RHCGQ9UBD6 479 aa12.39□□□□□ -0.43
VPS52-218ENST00000482399 RNF6Q9Y252 685 aa12.39□□□□□ -0.43
VPS52-218ENST00000482399 LTBP4Q8N2S1 1624 aa12.39□□□□□ -0.43
VPS52-218ENST00000482399 OR7A17O14581 309 aa12.39□□□□□ -0.43
VPS52-218ENST00000482399 ESR1P03372 595 aa12.39□□□□□ -0.43
VPS52-218ENST00000482399 RRM2P31350 389 aa12.39□□□□□ -0.43
VPS52-218ENST00000482399 KRT20P35900 424 aa12.39□□□□□ -0.43
VPS52-218ENST00000482399 IRF8Q02556 426 aa12.39□□□□□ -0.43
VPS52-218ENST00000482399 POM121L1PQ3SYA9 428 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms