RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 EPHA4P54764 986 aa9.85□□□□□ -0.83
USP39-215ENST00000481409 NAE1Q13564 534 aa9.85□□□□□ -0.83
USP39-215ENST00000481409 LAPTM5Q13571 262 aa9.85□□□□□ -0.83
USP39-215ENST00000481409 KIR2DS3Q14952 304 aa9.85□□□□□ -0.83
USP39-215ENST00000481409 C6orf132Q5T0Z8 1188 aa9.85□□□□□ -0.83
USP39-215ENST00000481409 GKAP1Q5VSY0 366 aaPredicted RBP9.85□□□□□ -0.83
USP39-215ENST00000481409 PRR23BQ6ZRT6 265 aa9.85□□□□□ -0.83
USP39-215ENST00000481409 GPRIN3Q6ZVF9 776 aa9.85□□□□□ -0.83
USP39-215ENST00000481409 THOC6Q86W42 341 aaKnown RBP9.85□□□□□ -0.83
USP39-215ENST00000481409 AMIGO1Q86WK6 493 aa9.85□□□□□ -0.83
USP39-215ENST00000481409 LRRC56Q8IYG6 542 aaPredicted RBP9.85□□□□□ -0.83
USP39-215ENST00000481409 LSMEM2Q8N112 164 aa9.85□□□□□ -0.83
USP39-215ENST00000481409 NAGSQ8N159 534 aa9.85□□□□□ -0.83
USP39-215ENST00000481409 TEX9Q8N6V9 391 aa9.85□□□□□ -0.83
USP39-215ENST00000481409 ANKS4BQ8N8V4 417 aa9.85□□□□□ -0.83
USP39-215ENST00000481409 L3MBTL4Q8NA19 623 aa9.85□□□□□ -0.83
USP39-215ENST00000481409 OR52E1Q8NGJ3 308 aa9.85□□□□□ -0.83
USP39-215ENST00000481409 BCAS4Q8TDM0 211 aa9.85□□□□□ -0.83
USP39-215ENST00000481409 AGAP11Q8TF27 550 aa9.85□□□□□ -0.83
USP39-215ENST00000481409 LCN9Q8WX39 176 aa9.85□□□□□ -0.83
USP39-215ENST00000481409 ATP6V1E2Q96A05 226 aa9.85□□□□□ -0.83
USP39-215ENST00000481409 WDR34Q96EX3 536 aa9.85□□□□□ -0.83
USP39-215ENST00000481409 SEC16BQ96JE7 1060 aa9.85□□□□□ -0.83
USP39-215ENST00000481409 COL25A1Q9BXS0 654 aaPredicted RBP9.85□□□□□ -0.83
USP39-215ENST00000481409 SLC29A3Q9BZD2 475 aa9.85□□□□□ -0.83
USP39-215ENST00000481409 TCEAL2Q9H3H9 227 aaPredicted RBP9.85□□□□□ -0.83
USP39-215ENST00000481409 IPPKQ9H8X2 491 aa9.85□□□□□ -0.83
USP39-215ENST00000481409 SLCO1B3Q9NPD5 702 aa9.85□□□□□ -0.83
USP39-215ENST00000481409 EVA1BQ9NVM1 165 aa9.85□□□□□ -0.83
USP39-215ENST00000481409 KCNK4Q9NYG8 393 aa9.85□□□□□ -0.83
USP39-215ENST00000481409 SCHIP1Q9P0W5 487 aaPredicted RBP9.85□□□□□ -0.83
USP39-215ENST00000481409 APOBEC2Q9Y235 224 aaKnown RBP9.85□□□□□ -0.83
USP39-215ENST00000481409 TDRKHQ9Y2W6 561 aaKnown RBP9.85□□□□□ -0.83
USP39-215ENST00000481409 TSC22D4Q9Y3Q8 395 aa9.85□□□□□ -0.83
USP39-215ENST00000481409 DYRK1BQ9Y463 629 aa9.85□□□□□ -0.83
USP39-215ENST00000481409 TRAF6Q9Y4K3 522 aa9.85□□□□□ -0.83
USP39-215ENST00000481409 PCDHB11Q9Y5F2 797 aa9.85□□□□□ -0.83
USP39-215ENST00000481409 PCDHGB2Q9Y5G2 931 aa9.85□□□□□ -0.83
USP39-215ENST00000481409 SNX11Q9Y5W9 270 aa9.85□□□□□ -0.83
USP39-215ENST00000481409 BDP1A6H8Y1 2624 aa9.85□□□□□ -0.83
USP39-215ENST00000481409 ANKRD12Q6UB98 2062 aa9.84□□□□□ -0.83
USP39-215ENST00000481409 SERTM1A2A2V5 107 aa9.84□□□□□ -0.83
USP39-215ENST00000481409 OR52A4PA6NMU1 304 aa9.84□□□□□ -0.83
USP39-215ENST00000481409 NDUFAB1O14561 156 aa9.84□□□□□ -0.83
USP39-215ENST00000481409 AZIN1O14977 448 aa9.84□□□□□ -0.83
USP39-215ENST00000481409 HDAC3O15379 428 aa9.84□□□□□ -0.83
USP39-215ENST00000481409 YY2O15391 372 aa9.84□□□□□ -0.83
USP39-215ENST00000481409 PCDHGA12O60330 932 aa9.84□□□□□ -0.83
USP39-215ENST00000481409 SNX3O60493 162 aa9.84□□□□□ -0.83
USP39-215ENST00000481409 LRP3O75074 770 aa9.84□□□□□ -0.83
USP39-215ENST00000481409 VPS4BO75351 444 aa9.84□□□□□ -0.83
USP39-215ENST00000481409 CLDN9O95484 217 aa9.84□□□□□ -0.83
USP39-215ENST00000481409 CFIP05156 583 aa9.84□□□□□ -0.83
USP39-215ENST00000481409 PNLIPP16233 465 aa9.84□□□□□ -0.83
USP39-215ENST00000481409 CXCR2P25025 360 aa9.84□□□□□ -0.83
USP39-215ENST00000481409 GSTM2P28161 218 aa9.84□□□□□ -0.83
USP39-215ENST00000481409 EPHA8P29322 1005 aaPredicted RBP9.84□□□□□ -0.83
USP39-215ENST00000481409 SERPINB1P30740 379 aa9.84□□□□□ -0.83
USP39-215ENST00000481409 MPLP40238 635 aa9.84□□□□□ -0.83
USP39-215ENST00000481409 GPR3P46089 330 aa9.84□□□□□ -0.83
USP39-215ENST00000481409 SEC24CP53992 1094 aa9.84□□□□□ -0.83
USP39-215ENST00000481409 TBPL1P62380 186 aa9.84□□□□□ -0.83
USP39-215ENST00000481409 SH3BP2P78314 561 aa9.84□□□□□ -0.83
USP39-215ENST00000481409 HHEXQ03014 270 aa9.84□□□□□ -0.83
USP39-215ENST00000481409 GRIK2Q13002 908 aa9.84□□□□□ -0.83
USP39-215ENST00000481409 SUZ12Q15022 739 aaKnown RBP9.84□□□□□ -0.83
USP39-215ENST00000481409 RBBP7Q16576 425 aa9.84□□□□□ -0.83
USP39-215ENST00000481409 INAVAQ3KP66 663 aa9.84□□□□□ -0.83
USP39-215ENST00000481409 CCSMST1Q4G0I0 132 aa9.84□□□□□ -0.83
USP39-215ENST00000481409 ZNF542PQ5EBM4 170 aa9.84□□□□□ -0.83
USP39-215ENST00000481409 TRIM61Q5EBN2 209 aa9.84□□□□□ -0.83
USP39-215ENST00000481409 PAGE2BQ5JRK9 111 aa9.84□□□□□ -0.83
USP39-215ENST00000481409 PRAMEF14Q5SWL7 426 aa9.84□□□□□ -0.83
USP39-215ENST00000481409 CHCHD2P9Q5T1J5 151 aaPredicted RBP9.84□□□□□ -0.83
USP39-215ENST00000481409 PRAMEF13Q5VWM6 474 aa9.84□□□□□ -0.83
USP39-215ENST00000481409 ZCCHC8Q6NZY4 707 aaKnown RBP9.84□□□□□ -0.83
USP39-215ENST00000481409 TMEM26Q6ZUK4 368 aa9.84□□□□□ -0.83
USP39-215ENST00000481409 FAM47EQ6ZV65 393 aa9.84□□□□□ -0.83
USP39-215ENST00000481409 SPATA21Q7Z572 469 aa9.84□□□□□ -0.83
USP39-215ENST00000481409 MILR1Q7Z6M3 343 aa9.84□□□□□ -0.83
USP39-215ENST00000481409 PIGWQ7Z7B1 504 aa9.84□□□□□ -0.83
USP39-215ENST00000481409 CARFQ8N187 725 aa9.84□□□□□ -0.83
USP39-215ENST00000481409 ARL10Q8N8L6 244 aa9.84□□□□□ -0.83
USP39-215ENST00000481409 FAM181AQ8N9Y4 354 aa9.84□□□□□ -0.83
USP39-215ENST00000481409 GPR156Q8NFN8 814 aa9.84□□□□□ -0.83
USP39-215ENST00000481409 TRPC4APQ8TEL6 797 aa9.84□□□□□ -0.83
USP39-215ENST00000481409 UBE2E3Q969T4 207 aa9.84□□□□□ -0.83
USP39-215ENST00000481409 REPS1Q96D71 796 aa9.84□□□□□ -0.83
USP39-215ENST00000481409 PTCD3Q96EY7 689 aaKnown RBP9.84□□□□□ -0.83
USP39-215ENST00000481409 EFCAB11Q9BUY7 163 aa9.84□□□□□ -0.83
USP39-215ENST00000481409 C20orf27Q9GZN8 174 aa9.84□□□□□ -0.83
USP39-215ENST00000481409 ATG10Q9H0Y0 220 aa9.84□□□□□ -0.83
USP39-215ENST00000481409 SRMSQ9H3Y6 488 aa9.84□□□□□ -0.83
USP39-215ENST00000481409 NT5DC2Q9H857 520 aa9.84□□□□□ -0.83
USP39-215ENST00000481409 NOL11Q9H8H0 719 aaKnown RBP9.84□□□□□ -0.83
USP39-215ENST00000481409 ZBTB26Q9HCK0 441 aa9.84□□□□□ -0.83
USP39-215ENST00000481409 MID1IP1Q9NPA3 183 aa9.84□□□□□ -0.83
USP39-215ENST00000481409 SEMA4BQ9NPR2 832 aaPredicted RBP9.84□□□□□ -0.83
USP39-215ENST00000481409 INTS7Q9NVH2 962 aaKnown RBP9.84□□□□□ -0.83
USP39-215ENST00000481409 ANKMY1Q9P2S6 941 aa9.84□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms