RNA–Protein interactions for RNA: ENST00000475251.1

SKA3-206, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 397 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-206ENST00000475251 MRPS2Q9Y399 296 aaKnown RBP12.07□□□□□ -0.48
SKA3-206ENST00000475251 HYOU1Q9Y4L1 999 aa12.07□□□□□ -0.48
SKA3-206ENST00000475251 NSG1A0A0A6YYJ2 146 aa12.06□□□□□ -0.48
SKA3-206ENST00000475251 GOLGA6L19H0YKK7 550 aa12.06□□□□□ -0.48
SKA3-206ENST00000475251 SRPX2O60687 465 aaPredicted RBP12.06□□□□□ -0.48
SKA3-206ENST00000475251 KLHL18O94889 574 aa12.06□□□□□ -0.48
SKA3-206ENST00000475251 S1PR4O95977 384 aa12.06□□□□□ -0.48
SKA3-206ENST00000475251 TPM1P09493 284 aa12.06□□□□□ -0.48
SKA3-206ENST00000475251 OR56A5P0C7T3 313 aa12.06□□□□□ -0.48
SKA3-206ENST00000475251 CTNNA2P26232 953 aa12.06□□□□□ -0.48
SKA3-206ENST00000475251 PSMB4P28070 264 aa12.06□□□□□ -0.48
SKA3-206ENST00000475251 CDKN1CP49918 316 aaPredicted RBP12.06□□□□□ -0.48
SKA3-206ENST00000475251 TNFSF10P50591 281 aa12.06□□□□□ -0.48
SKA3-206ENST00000475251 MSLNQ13421 630 aaPredicted RBP12.06□□□□□ -0.48
SKA3-206ENST00000475251 DBN1Q16643 649 aa12.06□□□□□ -0.48
SKA3-206ENST00000475251 ANKRD20A2Q5SQ80 823 aa12.06□□□□□ -0.48
SKA3-206ENST00000475251 ANKRD20A1Q5TYW2 823 aa12.06□□□□□ -0.48
SKA3-206ENST00000475251 ANKRD20A3Q5VUR7 823 aa12.06□□□□□ -0.48
SKA3-206ENST00000475251 PRMT9Q6P2P2 845 aa12.06□□□□□ -0.48
SKA3-206ENST00000475251 PACS1Q6VY07 963 aa12.06□□□□□ -0.48
SKA3-206ENST00000475251 SHISA6Q6ZSJ9 500 aa12.06□□□□□ -0.48
SKA3-206ENST00000475251 BBS12Q6ZW61 710 aa12.06□□□□□ -0.48
SKA3-206ENST00000475251 DNAJB8Q8NHS0 232 aa12.06□□□□□ -0.48
SKA3-206ENST00000475251 SUN3Q8TAQ9 357 aa12.06□□□□□ -0.48
SKA3-206ENST00000475251 HAS2Q92819 552 aa12.06□□□□□ -0.48
SKA3-206ENST00000475251 DNAJC1Q96KC8 554 aaKnown RBP12.06□□□□□ -0.48
SKA3-206ENST00000475251 TTC1Q99614 292 aa12.06□□□□□ -0.48
SKA3-206ENST00000475251 DNAJC7Q99615 494 aa12.06□□□□□ -0.48
SKA3-206ENST00000475251 SELENOSQ9BQE4 189 aa12.06□□□□□ -0.48
SKA3-206ENST00000475251 ZNF160Q9HCG1 818 aa12.06□□□□□ -0.48
SKA3-206ENST00000475251 NLE1Q9NVX2 485 aaPredicted RBP12.06□□□□□ -0.48
SKA3-206ENST00000475251 CTSFQ9UBX1 484 aa12.06□□□□□ -0.48
SKA3-206ENST00000475251 ZNF282Q9UDV7 671 aaPredicted RBP12.06□□□□□ -0.48
SKA3-206ENST00000475251 FAM169AQ9Y6X4 670 aa12.06□□□□□ -0.48
SKA3-206ENST00000475251 SLC5A10A0PJK1 596 aa12.05□□□□□ -0.48
SKA3-206ENST00000475251 FITM1A5D6W6 292 aa12.05□□□□□ -0.48
SKA3-206ENST00000475251 CCL22O00626 93 aa12.05□□□□□ -0.48
SKA3-206ENST00000475251 UNC5CO95185 931 aa12.05□□□□□ -0.48
SKA3-206ENST00000475251 RASAL1O95294 804 aa12.05□□□□□ -0.48
SKA3-206ENST00000475251 TPBGLP0DKB5 382 aa12.05□□□□□ -0.48
SKA3-206ENST00000475251 AGAP20933 346 aa12.05□□□□□ -0.48
SKA3-206ENST00000475251 CXCR2P25025 360 aa12.05□□□□□ -0.48
SKA3-206ENST00000475251 PEBP1P30086 187 aaKnown RBP12.05□□□□□ -0.48
SKA3-206ENST00000475251 PKLRP30613 574 aa12.05□□□□□ -0.48
SKA3-206ENST00000475251 SSTR2P30874 369 aa12.05□□□□□ -0.48
SKA3-206ENST00000475251 CA7P43166 264 aa12.05□□□□□ -0.48
SKA3-206ENST00000475251 OR1D4P47884 311 aa12.05□□□□□ -0.48
SKA3-206ENST00000475251 Q0VFX4 171 aa12.05□□□□□ -0.48
SKA3-206ENST00000475251 OLIG2Q13516 323 aa12.05□□□□□ -0.48
SKA3-206ENST00000475251 BRD3Q15059 726 aa12.05□□□□□ -0.48
SKA3-206ENST00000475251 CNSTQ6PJW8 725 aa12.05□□□□□ -0.48
SKA3-206ENST00000475251 NDUFAF7Q7L592 441 aa12.05□□□□□ -0.48
SKA3-206ENST00000475251 LUZP1Q86V48 1076 aa12.05□□□□□ -0.48
SKA3-206ENST00000475251 TMEM151BQ8IW70 566 aa12.05□□□□□ -0.48
SKA3-206ENST00000475251 STYXQ8WUJ0 223 aa12.05□□□□□ -0.48
SKA3-206ENST00000475251 ZUFSPQ96AP4 578 aa12.05□□□□□ -0.48
SKA3-206ENST00000475251 MIEF2Q96C03 454 aa12.05□□□□□ -0.48
SKA3-206ENST00000475251 CDKN2AIPNLQ96HQ2 116 aa12.05□□□□□ -0.48
SKA3-206ENST00000475251 TAAR6Q96RI8 345 aa12.05□□□□□ -0.48
SKA3-206ENST00000475251 TSSK1BQ9BXA7 367 aa12.05□□□□□ -0.48
SKA3-206ENST00000475251 RAB11FIP5Q9BXF6 653 aa12.05□□□□□ -0.48
SKA3-206ENST00000475251 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP12.05□□□□□ -0.48
SKA3-206ENST00000475251 ZNF304Q9HCX3 659 aa12.05□□□□□ -0.48
SKA3-206ENST00000475251 IFNKQ9P0W0 207 aa12.05□□□□□ -0.48
SKA3-206ENST00000475251 ABI3Q9P2A4 366 aa12.05□□□□□ -0.48
SKA3-206ENST00000475251 SEC14L3Q9UDX4 400 aa12.05□□□□□ -0.48
SKA3-206ENST00000475251 ITGB1BP2Q9UKP3 347 aa12.05□□□□□ -0.48
SKA3-206ENST00000475251 PLAGL1Q9UM63 463 aa12.05□□□□□ -0.48
SKA3-206ENST00000475251 MACROD2A1Z1Q3 448 aa12.04□□□□□ -0.48
SKA3-206ENST00000475251 TARM1B6A8C7 271 aa12.04□□□□□ -0.48
SKA3-206ENST00000475251 BHMG1C9JSJ3 638 aaPredicted RBP12.04□□□□□ -0.48
SKA3-206ENST00000475251 KCNN4O15554 427 aa12.04□□□□□ -0.48
SKA3-206ENST00000475251 WFS1O76024 890 aa12.04□□□□□ -0.48
SKA3-206ENST00000475251 SERPINA7P05543 415 aa12.04□□□□□ -0.48
SKA3-206ENST00000475251 SNRPB2P08579 225 aaKnown RBP12.04□□□□□ -0.48
SKA3-206ENST00000475251 ZGLP1P0C6A0 271 aa12.04□□□□□ -0.48
SKA3-206ENST00000475251 CAPN3P20807 821 aa12.04□□□□□ -0.48
SKA3-206ENST00000475251 CD9P21926 228 aa12.04□□□□□ -0.48
SKA3-206ENST00000475251 SOX11P35716 441 aa12.04□□□□□ -0.48
SKA3-206ENST00000475251 SMSP52788 366 aa12.04□□□□□ -0.48
SKA3-206ENST00000475251 COPS2P61201 443 aa12.04□□□□□ -0.48
SKA3-206ENST00000475251 KLC1Q07866 573 aa12.04□□□□□ -0.48
SKA3-206ENST00000475251 DSG2Q14126 1118 aa12.04□□□□□ -0.48
SKA3-206ENST00000475251 SF1Q15637 639 aaKnown RBP12.04□□□□□ -0.48
SKA3-206ENST00000475251 KRTAP21-3Q3LHN1 58 aa12.04□□□□□ -0.48
SKA3-206ENST00000475251 DENND5AQ6IQ26 1287 aa12.04□□□□□ -0.48
SKA3-206ENST00000475251 TTC23LQ6PF05 361 aa12.04□□□□□ -0.48
SKA3-206ENST00000475251 RIPOR1Q6ZS17 1223 aa12.04□□□□□ -0.48
SKA3-206ENST00000475251 DCUN1D3Q8IWE4 304 aa12.04□□□□□ -0.48
SKA3-206ENST00000475251 RAB42Q8N4Z0 105 aa12.04□□□□□ -0.48
SKA3-206ENST00000475251 STT3BQ8TCJ2 826 aa12.04□□□□□ -0.48
SKA3-206ENST00000475251 ZDHHC19Q8WVZ1 309 aaPredicted RBP12.04□□□□□ -0.48
SKA3-206ENST00000475251 SPATA13Q96N96 652 aa12.04□□□□□ -0.48
SKA3-206ENST00000475251 ZNF285Q96NJ3 590 aa12.04□□□□□ -0.48
SKA3-206ENST00000475251 RNF32Q9H0A6 362 aa12.04□□□□□ -0.48
SKA3-206ENST00000475251 NHEJ1Q9H9Q4 299 aaPredicted RBP12.04□□□□□ -0.48
SKA3-206ENST00000475251 SPTLC3Q9NUV7 552 aa12.04□□□□□ -0.48
SKA3-206ENST00000475251 RIC8BQ9NVN3 520 aa12.04□□□□□ -0.48
SKA3-206ENST00000475251 PTGFRNQ9P2B2 879 aa12.04□□□□□ -0.48
SKA3-206ENST00000475251 C3orf18Q9UK00 162 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms