RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	CAVIN1	Q6NZI2	390 aa	Known RBP	3.49	□□□□□ -1.85
PTCD3-209	ENST00000472044	MOXD1	Q6UVY6	613 aa		3.49	□□□□□ -1.85
PTCD3-209	ENST00000472044	RBMS3	Q6XE24	437 aa	Known RBP	3.49	□□□□□ -1.85
PTCD3-209	ENST00000472044	MFSD6	Q6ZSS7	791 aa		3.49	□□□□□ -1.85
PTCD3-209	ENST00000472044	FAM47E	Q6ZV65	393 aa		3.49	□□□□□ -1.85
PTCD3-209	ENST00000472044	SLC26A9	Q7LBE3	791 aa		3.49	□□□□□ -1.85
PTCD3-209	ENST00000472044	OR8H3	Q8N146	312 aa		3.49	□□□□□ -1.85
PTCD3-209	ENST00000472044	RYBP	Q8N488	228 aa	Predicted RBP	3.49	□□□□□ -1.85
PTCD3-209	ENST00000472044	STPG4	Q8N801	248 aa		3.49	□□□□□ -1.85
PTCD3-209	ENST00000472044	RASGEF1A	Q8N9B8	481 aa		3.49	□□□□□ -1.85
PTCD3-209	ENST00000472044	OR11H4	Q8NGC9	324 aa		3.49	□□□□□ -1.85
PTCD3-209	ENST00000472044	OR52N5	Q8NH56	324 aa		3.49	□□□□□ -1.85
PTCD3-209	ENST00000472044	VANGL1	Q8TAA9	524 aa	Predicted RBP	3.49	□□□□□ -1.85
PTCD3-209	ENST00000472044	ZNF524	Q96C55	264 aa		3.49	□□□□□ -1.85
PTCD3-209	ENST00000472044	HES6	Q96HZ4	224 aa		3.49	□□□□□ -1.85
PTCD3-209	ENST00000472044	FAM71F1	Q96KD3	344 aa	Predicted RBP	3.49	□□□□□ -1.85
PTCD3-209	ENST00000472044	FAM20A	Q96MK3	541 aa		3.49	□□□□□ -1.85
PTCD3-209	ENST00000472044	SPATA33	Q96N06	139 aa		3.49	□□□□□ -1.85
PTCD3-209	ENST00000472044	NODAL	Q96S42	347 aa		3.49	□□□□□ -1.85
PTCD3-209	ENST00000472044	KATNB1	Q9BVA0	655 aa		3.49	□□□□□ -1.85
PTCD3-209	ENST00000472044	TUBB2B	Q9BVA1	445 aa		3.49	□□□□□ -1.85
PTCD3-209	ENST00000472044	CPVL	Q9H3G5	476 aa		3.49	□□□□□ -1.85
PTCD3-209	ENST00000472044	BICC1	Q9H694	974 aa	Known RBP	3.49	□□□□□ -1.85
PTCD3-209	ENST00000472044	ZNF624	Q9P2J8	865 aa	Predicted RBP	3.49	□□□□□ -1.85
PTCD3-209	ENST00000472044	TXNDC16	Q9P2K2	825 aa		3.49	□□□□□ -1.85
PTCD3-209	ENST00000472044	CACNG4	Q9UBN1	327 aa		3.49	□□□□□ -1.85
PTCD3-209	ENST00000472044	TRAV34	A0A0B4J273	112 aa		3.48	□□□□□ -1.85
PTCD3-209	ENST00000472044	IGHV4-61	A0A0C4DH41	118 aa		3.48	□□□□□ -1.85
PTCD3-209	ENST00000472044	ANKRD61	A6NGH8	418 aa		3.48	□□□□□ -1.85
PTCD3-209	ENST00000472044	DUXA	A6NLW8	204 aa		3.48	□□□□□ -1.85
PTCD3-209	ENST00000472044	C2orf81	A6NN90	581 aa		3.48	□□□□□ -1.85
PTCD3-209	ENST00000472044	ENO4	A6NNW6	628 aa		3.48	□□□□□ -1.85
PTCD3-209	ENST00000472044	SMIM1	B2RUZ4	78 aa		3.48	□□□□□ -1.85
PTCD3-209	ENST00000472044	FAM72C	H0Y354	149 aa		3.48	□□□□□ -1.85
PTCD3-209	ENST00000472044	DNM1L	O00429	736 aa		3.48	□□□□□ -1.85
PTCD3-209	ENST00000472044	ARPC2	O15144	300 aa		3.48	□□□□□ -1.85
PTCD3-209	ENST00000472044	SLC22A3	O75751	556 aa		3.48	□□□□□ -1.85
PTCD3-209	ENST00000472044	ZNF432	O94892	652 aa		3.48	□□□□□ -1.85
PTCD3-209	ENST00000472044	CAVIN2	O95810	425 aa		3.48	□□□□□ -1.85
PTCD3-209	ENST00000472044	IGHV4-59	P01825	116 aa		3.48	□□□□□ -1.85
PTCD3-209	ENST00000472044	HSP90AB1	P08238	724 aa	Known RBP	3.48	□□□□□ -1.85
PTCD3-209	ENST00000472044	ERVK-10	P10266	1014 aa		3.48	□□□□□ -1.85
PTCD3-209	ENST00000472044	TCF4	P15884	667 aa		3.48	□□□□□ -1.85
PTCD3-209	ENST00000472044	CAST	P20810	708 aa	Known RBP	3.48	□□□□□ -1.85
PTCD3-209	ENST00000472044	AZGP1	P25311	298 aa	Known RBP	3.48	□□□□□ -1.85
PTCD3-209	ENST00000472044	KRT2	P35908	639 aa		3.48	□□□□□ -1.85
PTCD3-209	ENST00000472044	VAMP7	P51809	220 aa		3.48	□□□□□ -1.85
PTCD3-209	ENST00000472044	KRT83	P78385	493 aa		3.48	□□□□□ -1.85
PTCD3-209	ENST00000472044	TAF10	Q12962	218 aa		3.48	□□□□□ -1.85
PTCD3-209	ENST00000472044	PHKG1	Q16816	387 aa		3.48	□□□□□ -1.85
PTCD3-209	ENST00000472044	ALDH1L2	Q3SY69	923 aa		3.48	□□□□□ -1.85
PTCD3-209	ENST00000472044	KLHL22	Q53GT1	634 aa		3.48	□□□□□ -1.85
PTCD3-209	ENST00000472044	FAM72A	Q5TYM5	149 aa		3.48	□□□□□ -1.85
PTCD3-209	ENST00000472044	FAM91A1	Q658Y4	838 aa		3.48	□□□□□ -1.85
PTCD3-209	ENST00000472044	FAM72D	Q6L9T8	149 aa		3.48	□□□□□ -1.85
PTCD3-209	ENST00000472044	C11orf88	Q6PI97	169 aa		3.48	□□□□□ -1.85
PTCD3-209	ENST00000472044	ENPP7	Q6UWV6	458 aa		3.48	□□□□□ -1.85
PTCD3-209	ENST00000472044	MEX3B	Q6ZN04	569 aa	Known RBP	3.48	□□□□□ -1.85
PTCD3-209	ENST00000472044	DNAJB7	Q7Z6W7	309 aa	Predicted RBP	3.48	□□□□□ -1.85
PTCD3-209	ENST00000472044	ISCA2	Q86U28	154 aa		3.48	□□□□□ -1.85
PTCD3-209	ENST00000472044	CUZD1	Q86UP6	607 aa		3.48	□□□□□ -1.85
PTCD3-209	ENST00000472044	FAM72B	Q86X60	149 aa		3.48	□□□□□ -1.85
PTCD3-209	ENST00000472044	NDUFAF2	Q8N183	169 aa		3.48	□□□□□ -1.85
PTCD3-209	ENST00000472044	DNAJC22	Q8N4W6	341 aa		3.48	□□□□□ -1.85
PTCD3-209	ENST00000472044	OR4K1	Q8NGD4	311 aa		3.48	□□□□□ -1.85
PTCD3-209	ENST00000472044	THOC1	Q96FV9	657 aa	Known RBP	3.48	□□□□□ -1.85
PTCD3-209	ENST00000472044	SENP5	Q96HI0	755 aa	Predicted RBP	3.48	□□□□□ -1.85
PTCD3-209	ENST00000472044	NSL1	Q96IY1	281 aa		3.48	□□□□□ -1.85
PTCD3-209	ENST00000472044	EPYC	Q99645	322 aa		3.48	□□□□□ -1.85
PTCD3-209	ENST00000472044	CITED2	Q99967	270 aa	Predicted RBP	3.48	□□□□□ -1.85
PTCD3-209	ENST00000472044	INPP5K	Q9BT40	448 aa		3.48	□□□□□ -1.85
PTCD3-209	ENST00000472044	THUMPD3	Q9BV44	507 aa	Known RBP	3.48	□□□□□ -1.85
PTCD3-209	ENST00000472044	KRTAP1-5	Q9BYS1	174 aa		3.48	□□□□□ -1.85
PTCD3-209	ENST00000472044	PANK2	Q9BZ23	570 aa		3.48	□□□□□ -1.85
PTCD3-209	ENST00000472044	MTMR12	Q9C0I1	747 aa		3.48	□□□□□ -1.85
PTCD3-209	ENST00000472044	SDF2L1	Q9HCN8	221 aa		3.48	□□□□□ -1.85
PTCD3-209	ENST00000472044	GSN-AS1	Q9NRJ2	163 aa		3.48	□□□□□ -1.85
PTCD3-209	ENST00000472044	TCF19	Q9Y242	345 aa		3.48	□□□□□ -1.85
PTCD3-209	ENST00000472044	TMED3	Q9Y3Q3	217 aa		3.48	□□□□□ -1.85
PTCD3-209	ENST00000472044	TCF20	Q9UGU0	1960 aa	Known RBP	3.48	□□□□□ -1.85
PTCD3-209	ENST00000472044	ARHGEF37	A1IGU5	675 aa		3.47	□□□□□ -1.85
PTCD3-209	ENST00000472044	C5orf52	A6NGY3	159 aa		3.47	□□□□□ -1.85
PTCD3-209	ENST00000472044	IFITM10	A6NMD0	228 aa		3.47	□□□□□ -1.85
PTCD3-209	ENST00000472044	PI4K2B	G5E9Z4	385 aa		3.47	□□□□□ -1.85
PTCD3-209	ENST00000472044	IFIT3	O14879	490 aa	Known RBP	3.47	□□□□□ -1.85
PTCD3-209	ENST00000472044	PCDH7	O60245	1069 aa		3.47	□□□□□ -1.85
PTCD3-209	ENST00000472044	CIDEA	O60543	219 aa		3.47	□□□□□ -1.85
PTCD3-209	ENST00000472044	DFFB	O76075	338 aa		3.47	□□□□□ -1.85
PTCD3-209	ENST00000472044	RPN1	P04843	607 aa	Known RBP	3.47	□□□□□ -1.85
PTCD3-209	ENST00000472044	EDN1	P05305	212 aa		3.47	□□□□□ -1.85
PTCD3-209	ENST00000472044	UMOD	P07911	640 aa		3.47	□□□□□ -1.85
PTCD3-209	ENST00000472044	CEACAM8	P31997	349 aa	Predicted RBP	3.47	□□□□□ -1.85
PTCD3-209	ENST00000472044	CDKN1A	P38936	164 aa		3.47	□□□□□ -1.85
PTCD3-209	ENST00000472044	RGS7	P49802	495 aa		3.47	□□□□□ -1.85
PTCD3-209	ENST00000472044	GMPS	P49915	693 aa	Predicted RBP	3.47	□□□□□ -1.85
PTCD3-209	ENST00000472044	MFAP3	P55082	362 aa		3.47	□□□□□ -1.85
PTCD3-209	ENST00000472044	LINC01547	P58512	204 aa	Predicted RBP	3.47	□□□□□ -1.85
PTCD3-209	ENST00000472044	GPR17	Q13304	367 aa		3.47	□□□□□ -1.85
PTCD3-209	ENST00000472044	PTGIS	Q16647	500 aa		3.47	□□□□□ -1.85
PTCD3-209	ENST00000472044	CDO1	Q16878	200 aa		3.47	□□□□□ -1.85

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