RNA–Protein interactions for RNA: ENST00000466532.1

COL9A3-206, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 539 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-206ENST00000466532 PLEKHN1Q494U1 663 aaPredicted RBP18.39■□□□□ 0.53
COL9A3-206ENST00000466532 ZC3H12BQ5HYM0 836 aaKnown RBP18.39■□□□□ 0.53
COL9A3-206ENST00000466532 MEI1Q5TIA1 1274 aa18.39■□□□□ 0.53
COL9A3-206ENST00000466532 FCRL6Q6DN72 434 aa18.39■□□□□ 0.53
COL9A3-206ENST00000466532 TTC23LQ6PF05 361 aa18.39■□□□□ 0.53
COL9A3-206ENST00000466532 FIGLAQ6QHK4 219 aa18.39■□□□□ 0.53
COL9A3-206ENST00000466532 DENND1AQ8TEH3 1009 aa18.39■□□□□ 0.53
COL9A3-206ENST00000466532 RAB11FIP5Q9BXF6 653 aa18.39■□□□□ 0.53
COL9A3-206ENST00000466532 P2RY12Q9H244 342 aa18.39■□□□□ 0.53
COL9A3-206ENST00000466532 EIF2B3Q9NR50 452 aaKnown RBP18.39■□□□□ 0.53
COL9A3-206ENST00000466532 TREX1Q9NSU2 369 aa18.39■□□□□ 0.53
COL9A3-206ENST00000466532 A0A1B0GX78 115 aa18.38■□□□□ 0.53
COL9A3-206ENST00000466532 SEMA7AO75326 666 aa18.38■□□□□ 0.53
COL9A3-206ENST00000466532 NDUFS3O75489 264 aa18.38■□□□□ 0.53
COL9A3-206ENST00000466532 ITGAXP20702 1163 aa18.38■□□□□ 0.53
COL9A3-206ENST00000466532 NMBRP28336 390 aa18.38■□□□□ 0.53
COL9A3-206ENST00000466532 BASP1P80723 227 aaKnown RBP18.38■□□□□ 0.53
COL9A3-206ENST00000466532 MRPL49Q13405 166 aaKnown RBP18.38■□□□□ 0.53
COL9A3-206ENST00000466532 SIX1Q15475 284 aaPredicted RBP18.38■□□□□ 0.53
COL9A3-206ENST00000466532 CCNG2Q16589 344 aa18.38■□□□□ 0.53
COL9A3-206ENST00000466532 IQCKQ8N0W5 287 aa18.38■□□□□ 0.53
COL9A3-206ENST00000466532 SSC4DQ8WTU2 575 aa18.38■□□□□ 0.53
COL9A3-206ENST00000466532 SKA2Q8WVK7 121 aaPredicted RBP18.38■□□□□ 0.53
COL9A3-206ENST00000466532 FKBP10Q96AY3 582 aa18.38■□□□□ 0.53
COL9A3-206ENST00000466532 RAD51AP1Q96B01 352 aa18.38■□□□□ 0.53
COL9A3-206ENST00000466532 IL22Q9GZX6 179 aa18.38■□□□□ 0.53
COL9A3-206ENST00000466532 ZNF552Q9H707 407 aaPredicted RBP18.38■□□□□ 0.53
COL9A3-206ENST00000466532 B3GNT3Q9Y2A9 372 aa18.38■□□□□ 0.53
COL9A3-206ENST00000466532 GOLGA6L6A8MZA4 724 aa18.37■□□□□ 0.53
COL9A3-206ENST00000466532 AGPSO00116 658 aa18.37■□□□□ 0.53
COL9A3-206ENST00000466532 DSCR3O14972 297 aa18.37■□□□□ 0.53
COL9A3-206ENST00000466532 KPNA5O15131 536 aa18.37■□□□□ 0.53
COL9A3-206ENST00000466532 IPO13O94829 963 aaKnown RBP18.37■□□□□ 0.53
COL9A3-206ENST00000466532 PIM1P11309 404 aaPredicted RBP18.37■□□□□ 0.53
COL9A3-206ENST00000466532 RPS3P23396 243 aaKnown RBP eCLIP18.37■□□□□ 0.532e-14■■■□□ 15.9
COL9A3-206ENST00000466532 MCM3P25205 808 aa18.37■□□□□ 0.53
COL9A3-206ENST00000466532 BDKRB1P46663 353 aa18.37■□□□□ 0.53
COL9A3-206ENST00000466532 EIF3BP55884 814 aaKnown RBP18.37■□□□□ 0.53
COL9A3-206ENST00000466532 GRM7Q14831 915 aa18.37■□□□□ 0.53
COL9A3-206ENST00000466532 EIF2S3LQ2VIR3 472 aaKnown RBP18.37■□□□□ 0.53
COL9A3-206ENST00000466532 TCTE1Q5JU00 501 aa18.37■□□□□ 0.53
COL9A3-206ENST00000466532 GSTA5Q7RTV2 222 aa18.37■□□□□ 0.53
COL9A3-206ENST00000466532 OTOAQ7RTW8 1153 aa18.37■□□□□ 0.53
COL9A3-206ENST00000466532 OVCH1Q7RTY7 1134 aa18.37■□□□□ 0.53
COL9A3-206ENST00000466532 LRRC6Q86X45 466 aa18.37■□□□□ 0.53
COL9A3-206ENST00000466532 MPP5Q8N3R9 675 aa18.37■□□□□ 0.53
COL9A3-206ENST00000466532 RAB42Q8N4Z0 105 aa18.37■□□□□ 0.53
COL9A3-206ENST00000466532 OTUD6BQ8N6M0 293 aa18.37■□□□□ 0.53
COL9A3-206ENST00000466532 C19orf60Q96EN9 201 aa18.37■□□□□ 0.53
COL9A3-206ENST00000466532 SELENOSQ9BQE4 189 aa18.37■□□□□ 0.53
COL9A3-206ENST00000466532 ATP13A2Q9NQ11 1180 aa18.37■□□□□ 0.53
COL9A3-206ENST00000466532 CUTCQ9NTM9 273 aa18.37■□□□□ 0.53
COL9A3-206ENST00000466532 BFARQ9NZS9 450 aa18.37■□□□□ 0.53
COL9A3-206ENST00000466532 TTC7AQ9ULT0 858 aaPredicted RBP18.37■□□□□ 0.53
COL9A3-206ENST00000466532 DRG1Q9Y295 367 aaKnown RBP18.37■□□□□ 0.53
COL9A3-206ENST00000466532 MRFAP1Q9Y605 127 aa18.37■□□□□ 0.53
COL9A3-206ENST00000466532 NFS1Q9Y697 457 aa18.37■□□□□ 0.53
COL9A3-206ENST00000466532 AP3B1O00203 1094 aa18.36■□□□□ 0.53
COL9A3-206ENST00000466532 PRICKLE3O43900 615 aaPredicted RBP18.36■□□□□ 0.53
COL9A3-206ENST00000466532 FKBP9O95302 570 aa18.36■□□□□ 0.53
COL9A3-206ENST00000466532 C1orf105O95561 183 aa18.36■□□□□ 0.53
COL9A3-206ENST00000466532 NPY2RP49146 381 aa18.36■□□□□ 0.53
COL9A3-206ENST00000466532 SOX8P57073 446 aa18.36■□□□□ 0.53
COL9A3-206ENST00000466532 CCSMST1Q4G0I0 132 aa18.36■□□□□ 0.53
COL9A3-206ENST00000466532 C4orf17Q53FE4 359 aa18.36■□□□□ 0.53
COL9A3-206ENST00000466532 YOD1Q5VVQ6 348 aaPredicted RBP18.36■□□□□ 0.53
COL9A3-206ENST00000466532 DRICH1Q6PGQ1 229 aaPredicted RBP18.36■□□□□ 0.53
COL9A3-206ENST00000466532 CNSTQ6PJW8 725 aa18.36■□□□□ 0.53
COL9A3-206ENST00000466532 IGFL3Q6UXB1 125 aa18.36■□□□□ 0.53
COL9A3-206ENST00000466532 C4orf22Q6V702 233 aa18.36■□□□□ 0.53
COL9A3-206ENST00000466532 TTC29Q8NA56 475 aaPredicted RBP18.36■□□□□ 0.53
COL9A3-206ENST00000466532 PRR7Q8TB68 274 aa18.36■□□□□ 0.53
COL9A3-206ENST00000466532 ZDHHC19Q8WVZ1 309 aaPredicted RBP18.36■□□□□ 0.53
COL9A3-206ENST00000466532 TM9SF4Q92544 642 aa18.36■□□□□ 0.53
COL9A3-206ENST00000466532 ZUFSPQ96AP4 578 aa18.36■□□□□ 0.53
COL9A3-206ENST00000466532 SNRNP40Q96DI7 357 aaKnown RBP18.36■□□□□ 0.53
COL9A3-206ENST00000466532 ILKAPQ9H0C8 392 aaPredicted RBP18.36■□□□□ 0.53
COL9A3-206ENST00000466532 WDR54Q9H977 334 aa18.36■□□□□ 0.53
COL9A3-206ENST00000466532 CUEDC1Q9NWM3 386 aaPredicted RBP18.36■□□□□ 0.53
COL9A3-206ENST00000466532 PLEKHB1Q9UF11 243 aaPredicted RBP18.36■□□□□ 0.53
COL9A3-206ENST00000466532 CDC23Q9UJX2 597 aa18.36■□□□□ 0.53
COL9A3-206ENST00000466532 RUVBL2Q9Y230 463 aaKnown RBP18.36■□□□□ 0.53
COL9A3-206ENST00000466532 KRT87PA6NCN2 255 aa18.35■□□□□ 0.53
COL9A3-206ENST00000466532 TARM1B6A8C7 271 aa18.35■□□□□ 0.53
COL9A3-206ENST00000466532 ONECUT2O95948 504 aa18.35■□□□□ 0.53
COL9A3-206ENST00000466532 ALBP02768 609 aa18.35■□□□□ 0.53
COL9A3-206ENST00000466532 MMP11P24347 488 aa18.35■□□□□ 0.53
COL9A3-206ENST00000466532 ITGA3P26006 1051 aa18.35■□□□□ 0.53
COL9A3-206ENST00000466532 MGAT1P26572 445 aa18.35■□□□□ 0.53
COL9A3-206ENST00000466532 PSMB5P28074 263 aa18.35■□□□□ 0.53
COL9A3-206ENST00000466532 AIMP2Q13155 320 aaKnown RBP18.35■□□□□ 0.53
COL9A3-206ENST00000466532 NKG7Q16617 165 aa18.35■□□□□ 0.53
COL9A3-206ENST00000466532 CTSL3PQ5NE16 218 aa18.35■□□□□ 0.53
COL9A3-206ENST00000466532 HIST2H2BCQ6DN03 193 aa18.35■□□□□ 0.53
COL9A3-206ENST00000466532 COX15Q7KZN9 410 aa18.35■□□□□ 0.53
COL9A3-206ENST00000466532 ZADH2Q8N4Q0 377 aa18.35■□□□□ 0.53
COL9A3-206ENST00000466532 CISD2Q8N5K1 135 aaKnown RBP18.35■□□□□ 0.53
COL9A3-206ENST00000466532 NACC2Q96BF6 587 aa18.35■□□□□ 0.53
COL9A3-206ENST00000466532 FOPNLQ96NB1 174 aa18.35■□□□□ 0.53
COL9A3-206ENST00000466532 ZNF285Q96NJ3 590 aa18.35■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms