RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 ISOC1Q96CN7 298 aa8.7□□□□□ -1.02
SYNE1-217ENST00000466159 CPPED1Q9BRF8 314 aaPredicted RBP8.7□□□□□ -1.02
SYNE1-217ENST00000466159 KCNH6Q9H252 994 aa8.7□□□□□ -1.02
SYNE1-217ENST00000466159 PKD2L2Q9NZM6 624 aa8.7□□□□□ -1.02
SYNE1-217ENST00000466159 DNAJB9Q9UBS3 223 aa8.7□□□□□ -1.02
SYNE1-217ENST00000466159 CIDEBQ9UHD4 219 aa8.7□□□□□ -1.02
SYNE1-217ENST00000466159 HELZP42694 1942 aaKnown RBP8.7□□□□□ -1.02
SYNE1-217ENST00000466159 A0A096LPI6 279 aa8.7□□□□□ -1.02
SYNE1-217ENST00000466159 PABPN1LA6NDY0 278 aaKnown RBP8.7□□□□□ -1.02
SYNE1-217ENST00000466159 EIF3FO00303 357 aaPredicted RBP8.7□□□□□ -1.02
SYNE1-217ENST00000466159 GNGT2O14610 69 aa8.7□□□□□ -1.02
SYNE1-217ENST00000466159 ERN1O75460 977 aaKnown RBP8.7□□□□□ -1.02
SYNE1-217ENST00000466159 RFPL2O75678 378 aa8.7□□□□□ -1.02
SYNE1-217ENST00000466159 ARHGEF15O94989 841 aa8.7□□□□□ -1.02
SYNE1-217ENST00000466159 SCELO95171 688 aa8.7□□□□□ -1.02
SYNE1-217ENST00000466159 SERPINA1P01009 418 aa8.7□□□□□ -1.02
SYNE1-217ENST00000466159 CLTBP09497 229 aa8.7□□□□□ -1.02
SYNE1-217ENST00000466159 MPC1LP0DKB6 136 aa8.7□□□□□ -1.02
SYNE1-217ENST00000466159 HNMTP50135 292 aa8.7□□□□□ -1.02
SYNE1-217ENST00000466159 PFN3P60673 137 aa8.7□□□□□ -1.02
SYNE1-217ENST00000466159 CHIT1Q13231 466 aa8.7□□□□□ -1.02
SYNE1-217ENST00000466159 SLC14A1Q13336 389 aa8.7□□□□□ -1.02
SYNE1-217ENST00000466159 TEAD2Q15562 447 aa8.7□□□□□ -1.02
SYNE1-217ENST00000466159 POM121L1PQ3SYA9 428 aa8.7□□□□□ -1.02
SYNE1-217ENST00000466159 GGTA1PQ4G0N0 100 aa8.7□□□□□ -1.02
SYNE1-217ENST00000466159 CCNYL2Q5T2Q4 361 aa8.7□□□□□ -1.02
SYNE1-217ENST00000466159 LRIF1Q5T3J3 769 aa8.7□□□□□ -1.02
SYNE1-217ENST00000466159 ZDHHC20Q5W0Z9 365 aa8.7□□□□□ -1.02
SYNE1-217ENST00000466159 ATG9BQ674R7 924 aa8.7□□□□□ -1.02
SYNE1-217ENST00000466159 KCTD8Q6ZWB6 473 aa8.7□□□□□ -1.02
SYNE1-217ENST00000466159 ZNF551Q7Z340 670 aaPredicted RBP8.7□□□□□ -1.02
SYNE1-217ENST00000466159 CYP2U1Q7Z449 544 aa8.7□□□□□ -1.02
SYNE1-217ENST00000466159 GPR149Q86SP6 731 aa8.7□□□□□ -1.02
SYNE1-217ENST00000466159 CALHM3Q86XJ0 350 aa8.7□□□□□ -1.02
SYNE1-217ENST00000466159 TCAIMQ8N3R3 496 aa8.7□□□□□ -1.02
SYNE1-217ENST00000466159 L3MBTL4Q8NA19 623 aa8.7□□□□□ -1.02
SYNE1-217ENST00000466159 LEMD2Q8NC56 503 aa8.7□□□□□ -1.02
SYNE1-217ENST00000466159 MCOLN3Q8TDD5 553 aa8.7□□□□□ -1.02
SYNE1-217ENST00000466159 FOXJ1Q92949 421 aa8.7□□□□□ -1.02
SYNE1-217ENST00000466159 IRF7Q92985 503 aa8.7□□□□□ -1.02
SYNE1-217ENST00000466159 FAM120BQ96EK7 910 aaKnown RBP8.7□□□□□ -1.02
SYNE1-217ENST00000466159 CMTM7Q96FZ5 175 aa8.7□□□□□ -1.02
SYNE1-217ENST00000466159 EMILIN2Q9BXX0 1053 aa8.7□□□□□ -1.02
SYNE1-217ENST00000466159 EBPLQ9BY08 206 aa8.7□□□□□ -1.02
SYNE1-217ENST00000466159 CEP44Q9C0F1 390 aa8.7□□□□□ -1.02
SYNE1-217ENST00000466159 TOR3AQ9H497 397 aa8.7□□□□□ -1.02
SYNE1-217ENST00000466159 FAM83DQ9H4H8 585 aa8.7□□□□□ -1.02
SYNE1-217ENST00000466159 POLR1BQ9H9Y6 1135 aa8.7□□□□□ -1.02
SYNE1-217ENST00000466159 CXorf21Q9HAI6 301 aa8.7□□□□□ -1.02
SYNE1-217ENST00000466159 DCAF13Q9NV06 445 aaKnown RBP8.7□□□□□ -1.02
SYNE1-217ENST00000466159 DNAJC11Q9NVH1 559 aa8.7□□□□□ -1.02
SYNE1-217ENST00000466159 IFT80Q9P2H3 777 aaPredicted RBP8.7□□□□□ -1.02
SYNE1-217ENST00000466159 C5orf42Q9H799 3197 aa8.7□□□□□ -1.02
SYNE1-217ENST00000466159 HIDE1A8MVS5 230 aa8.69□□□□□ -1.02
SYNE1-217ENST00000466159 FADS2P1A8MWK0 482 aa8.69□□□□□ -1.02
SYNE1-217ENST00000466159 TTC34A8MYJ7 566 aa8.69□□□□□ -1.02
SYNE1-217ENST00000466159 TMX2-CTNND1H3BSU7 103 aa8.69□□□□□ -1.02
SYNE1-217ENST00000466159 LEFTY1O75610 366 aa8.69□□□□□ -1.02
SYNE1-217ENST00000466159 ADH1AP07327 375 aa8.69□□□□□ -1.02
SYNE1-217ENST00000466159 PRPS2P11908 318 aa8.69□□□□□ -1.02
SYNE1-217ENST00000466159 AMD1P17707 334 aa8.69□□□□□ -1.02
SYNE1-217ENST00000466159 CD22P20273 847 aa8.69□□□□□ -1.02
SYNE1-217ENST00000466159 CYP2A7P20853 494 aa8.69□□□□□ -1.02
SYNE1-217ENST00000466159 PRKACGP22612 351 aa8.69□□□□□ -1.02
SYNE1-217ENST00000466159 WEE1P30291 646 aa8.69□□□□□ -1.02
SYNE1-217ENST00000466159 POLR2IP36954 125 aaKnown RBP8.69□□□□□ -1.02
SYNE1-217ENST00000466159 RPS6KA3P51812 740 aa8.69□□□□□ -1.02
SYNE1-217ENST00000466159 POLR2LP62875 67 aaKnown RBP8.69□□□□□ -1.02
SYNE1-217ENST00000466159 CREMQ03060 361 aa8.69□□□□□ -1.02
SYNE1-217ENST00000466159 ABRQ12979 859 aa8.69□□□□□ -1.02
SYNE1-217ENST00000466159 RAB39AQ14964 217 aa8.69□□□□□ -1.02
SYNE1-217ENST00000466159 SF1Q15637 639 aaKnown RBP8.69□□□□□ -1.02
SYNE1-217ENST00000466159 ARSIQ5FYB1 569 aa8.69□□□□□ -1.02
SYNE1-217ENST00000466159 LY6G5CQ5SRR4 150 aa8.69□□□□□ -1.02
SYNE1-217ENST00000466159 PLEKHS1Q5SXH7 462 aa8.69□□□□□ -1.02
SYNE1-217ENST00000466159 FRG2Q64ET8 278 aa8.69□□□□□ -1.02
SYNE1-217ENST00000466159 OR4F3Q6IEY1 312 aa8.69□□□□□ -1.02
SYNE1-217ENST00000466159 TTC23LQ6PF05 361 aa8.69□□□□□ -1.02
SYNE1-217ENST00000466159 TMEM179BQ7Z7N9 219 aa8.69□□□□□ -1.02
SYNE1-217ENST00000466159 TMEM132CQ8N3T6 1108 aa8.69□□□□□ -1.02
SYNE1-217ENST00000466159 C12orf43Q96C57 262 aaKnown RBP8.69□□□□□ -1.02
SYNE1-217ENST00000466159 ITCHQ96J02 903 aa8.69□□□□□ -1.02
SYNE1-217ENST00000466159 FRG2BQ96QU4 278 aa8.69□□□□□ -1.02
SYNE1-217ENST00000466159 MAN2B2Q9Y2E5 1009 aa8.69□□□□□ -1.02
SYNE1-217ENST00000466159 HCFC2Q9Y5Z7 792 aa8.69□□□□□ -1.02
SYNE1-217ENST00000466159 U3KQV3 271 aa8.69□□□□□ -1.02
SYNE1-217ENST00000466159 CDH23Q9H251 3354 aa8.69□□□□□ -1.02
SYNE1-217ENST00000466159 CHD7Q9P2D1 2997 aa8.69□□□□□ -1.02
SYNE1-217ENST00000466159 CXorf51AA0A1B0GTR3 108 aa8.69□□□□□ -1.02
SYNE1-217ENST00000466159 C16orf96A6NNT2 1141 aa8.69□□□□□ -1.02
SYNE1-217ENST00000466159 FAM220BPB1ANY3 271 aa8.69□□□□□ -1.02
SYNE1-217ENST00000466159 RFXANKO14593 260 aa8.69□□□□□ -1.02
SYNE1-217ENST00000466159 MOSPD3O75425 235 aa8.69□□□□□ -1.02
SYNE1-217ENST00000466159 RETP07949 1114 aa8.69□□□□□ -1.02
SYNE1-217ENST00000466159 LINC00271P0C7V0 271 aa8.69□□□□□ -1.02
SYNE1-217ENST00000466159 HOXB9P17482 250 aaPredicted RBP8.69□□□□□ -1.02
SYNE1-217ENST00000466159 PIGAP37287 484 aa8.69□□□□□ -1.02
SYNE1-217ENST00000466159 RECQLP46063 649 aaPredicted RBP8.69□□□□□ -1.02
SYNE1-217ENST00000466159 NRIP1P48552 1158 aa8.69□□□□□ -1.02
SYNE1-217ENST00000466159 HLCSP50747 726 aa8.69□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms