RNA–Protein interactions for RNA: ENST00000444951.5

LIME1-202, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 3

Gene LIME1, Length 451 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-202ENST00000444951 KCNK4Q9NYG8 393 aa16.69■□□□□ 0.26
LIME1-202ENST00000444951 NCKIPSDQ9NZQ3 722 aa16.69■□□□□ 0.26
LIME1-202ENST00000444951 XPR1Q9UBH6 696 aa16.69■□□□□ 0.26
LIME1-202ENST00000444951 OARD1Q9Y530 152 aa16.69■□□□□ 0.26
LIME1-202ENST00000444951 RP1P56715 2156 aa16.69■□□□□ 0.26
LIME1-202ENST00000444951 GCN1Q92616 2671 aaKnown RBP16.68■□□□□ 0.26
LIME1-202ENST00000444951 TK2O00142 265 aa16.68■□□□□ 0.26
LIME1-202ENST00000444951 CASC3O15234 703 aaKnown RBP16.68■□□□□ 0.26
LIME1-202ENST00000444951 NUDT21O43809 227 aaKnown RBP16.68■□□□□ 0.26
LIME1-202ENST00000444951 ENO2P09104 434 aaPredicted RBP16.68■□□□□ 0.26
LIME1-202ENST00000444951 RBP1P09455 135 aa16.68■□□□□ 0.26
LIME1-202ENST00000444951 TYRP1P17643 537 aa16.68■□□□□ 0.26
LIME1-202ENST00000444951 CRHR1P34998 444 aa16.68■□□□□ 0.26
LIME1-202ENST00000444951 DUSP3P51452 185 aaPredicted RBP16.68■□□□□ 0.26
LIME1-202ENST00000444951 OR1D5P58170 312 aa16.68■□□□□ 0.26
LIME1-202ENST00000444951 GRB7Q14451 532 aa16.68■□□□□ 0.26
LIME1-202ENST00000444951 PPP1R3AQ16821 1122 aa16.68■□□□□ 0.26
LIME1-202ENST00000444951 AMZ1Q400G9 498 aa16.68■□□□□ 0.26
LIME1-202ENST00000444951 TTMPQ5BVD1 217 aa16.68■□□□□ 0.26
LIME1-202ENST00000444951 TNFAIP8L3Q5GJ75 292 aa16.68■□□□□ 0.26
LIME1-202ENST00000444951 RASGRP3Q8IV61 690 aa16.68■□□□□ 0.26
LIME1-202ENST00000444951 RBM12BQ8IXT5 1001 aaKnown RBP16.68■□□□□ 0.26
LIME1-202ENST00000444951 PPFIBP2Q8ND30 876 aa16.68■□□□□ 0.26
LIME1-202ENST00000444951 IFI44Q8TCB0 444 aa16.68■□□□□ 0.26
LIME1-202ENST00000444951 ALKBH8Q96BT7 664 aaKnown RBP16.68■□□□□ 0.26
LIME1-202ENST00000444951 ATP6V1G3Q96LB4 118 aa16.68■□□□□ 0.26
LIME1-202ENST00000444951 SH3GL2Q99962 352 aa16.68■□□□□ 0.26
LIME1-202ENST00000444951 LDHAL6BQ9BYZ2 381 aaPredicted RBP16.68■□□□□ 0.26
LIME1-202ENST00000444951 SRMSQ9H3Y6 488 aa16.68■□□□□ 0.26
LIME1-202ENST00000444951 EVA1BQ9NVM1 165 aa16.68■□□□□ 0.26
LIME1-202ENST00000444951 GRID1Q9ULK0 1009 aa16.68■□□□□ 0.26
LIME1-202ENST00000444951 ICKQ9UPZ9 632 aa16.68■□□□□ 0.26
LIME1-202ENST00000444951 ATMQ13315 3056 aa16.67■□□□□ 0.26
LIME1-202ENST00000444951 OR6C74A6NCV1 312 aa16.67■□□□□ 0.26
LIME1-202ENST00000444951 MYO1CO00159 1063 aa16.67■□□□□ 0.26
LIME1-202ENST00000444951 KDM1AO60341 852 aa16.67■□□□□ 0.26
LIME1-202ENST00000444951 KERAO60938 352 aa16.67■□□□□ 0.26
LIME1-202ENST00000444951 SLC16A8O95907 504 aa16.67■□□□□ 0.26
LIME1-202ENST00000444951 PRB1P04280 392 aa16.67■□□□□ 0.26
LIME1-202ENST00000444951 AMD1P17707 334 aa16.67■□□□□ 0.26
LIME1-202ENST00000444951 E2F1Q01094 437 aa16.67■□□□□ 0.26
LIME1-202ENST00000444951 TGFBIQ15582 683 aa16.67■□□□□ 0.26
LIME1-202ENST00000444951 TBC1D25Q3MII6 688 aa16.67■□□□□ 0.26
LIME1-202ENST00000444951 FBXO48Q5FWF7 155 aa16.67■□□□□ 0.26
LIME1-202ENST00000444951 NKAIN2Q5VXU1 208 aa16.67■□□□□ 0.26
LIME1-202ENST00000444951 LCA5Q86VQ0 697 aa16.67■□□□□ 0.26
LIME1-202ENST00000444951 SYTL1Q8IYJ3 562 aa16.67■□□□□ 0.26
LIME1-202ENST00000444951 RAB42Q8N4Z0 105 aa16.67■□□□□ 0.26
LIME1-202ENST00000444951 OR6C4Q8NGE1 309 aa16.67■□□□□ 0.26
LIME1-202ENST00000444951 TLCD1Q96CP7 247 aa16.67■□□□□ 0.26
LIME1-202ENST00000444951 CCDC138Q96M89 665 aa16.67■□□□□ 0.26
LIME1-202ENST00000444951 ATOH8Q96SQ7 321 aa16.67■□□□□ 0.26
LIME1-202ENST00000444951 MRPL57Q9BQC6 102 aaKnown RBP16.67■□□□□ 0.26
LIME1-202ENST00000444951 SELENOSQ9BQE4 189 aa16.67■□□□□ 0.26
LIME1-202ENST00000444951 CCDC3Q9BQI4 270 aa16.67■□□□□ 0.26
LIME1-202ENST00000444951 ATG10Q9H0Y0 220 aa16.67■□□□□ 0.26
LIME1-202ENST00000444951 MRPL46Q9H2W6 279 aaKnown RBP16.67■□□□□ 0.26
LIME1-202ENST00000444951 SLC17A7Q9P2U7 560 aa16.67■□□□□ 0.26
LIME1-202ENST00000444951 LNPEPQ9UIQ6 1025 aa16.67■□□□□ 0.26
LIME1-202ENST00000444951 EMCNQ9ULC0 261 aa16.67■□□□□ 0.26
LIME1-202ENST00000444951 KIF26BQ2KJY2 2108 aa16.67■□□□□ 0.26
LIME1-202ENST00000444951 EME2A4GXA9 379 aaPredicted RBP16.66■□□□□ 0.26
LIME1-202ENST00000444951 SYCE1LA8MT33 242 aa16.66■□□□□ 0.26
LIME1-202ENST00000444951 ANXA5P08758 320 aa16.66■□□□□ 0.26
LIME1-202ENST00000444951 GFAPP14136 432 aa16.66■□□□□ 0.26
LIME1-202ENST00000444951 PKLRP30613 574 aa16.66■□□□□ 0.26
LIME1-202ENST00000444951 HPDP32754 393 aaPredicted RBP16.66■□□□□ 0.26
LIME1-202ENST00000444951 RPA3P35244 121 aaPredicted RBP16.66■□□□□ 0.26
LIME1-202ENST00000444951 C18orf21Q32NC0 220 aaPredicted RBP16.66■□□□□ 0.26
LIME1-202ENST00000444951 AMIGO1Q86WK6 493 aa16.66■□□□□ 0.26
LIME1-202ENST00000444951 ANKRD42Q8N9B4 389 aa16.66■□□□□ 0.26
LIME1-202ENST00000444951 FBXO15Q8NCQ5 510 aaPredicted RBP16.66■□□□□ 0.26
LIME1-202ENST00000444951 ARMC2Q8NEN0 867 aa16.66■□□□□ 0.26
LIME1-202ENST00000444951 RHEBL1Q8TAI7 183 aa16.66■□□□□ 0.26
LIME1-202ENST00000444951 TCP10LQ8TDR4 215 aa16.66■□□□□ 0.26
LIME1-202ENST00000444951 DENND1AQ8TEH3 1009 aa16.66■□□□□ 0.26
LIME1-202ENST00000444951 ZFPM2Q8WW38 1151 aa16.66■□□□□ 0.26
LIME1-202ENST00000444951 FGF11Q92914 225 aa16.66■□□□□ 0.26
LIME1-202ENST00000444951 NAT6Q93015 286 aa16.66■□□□□ 0.26
LIME1-202ENST00000444951 MED8Q96G25 268 aa16.66■□□□□ 0.26
LIME1-202ENST00000444951 AHCYL2Q96HN2 611 aaKnown RBP16.66■□□□□ 0.26
LIME1-202ENST00000444951 FAM111AQ96PZ2 611 aa16.66■□□□□ 0.26
LIME1-202ENST00000444951 STOX2Q9P2F5 926 aaPredicted RBP16.66■□□□□ 0.26
LIME1-202ENST00000444951 A0A1W2PNU3 283 aaPredicted RBP16.65■□□□□ 0.26
LIME1-202ENST00000444951 GSAPA4D1B5 854 aa16.65■□□□□ 0.26
LIME1-202ENST00000444951 LILRA5A6NI73 299 aa16.65■□□□□ 0.26
LIME1-202ENST00000444951 B4GAT1O43505 415 aa16.65■□□□□ 0.26
LIME1-202ENST00000444951 ATP8B1O43520 1251 aa16.65■□□□□ 0.26
LIME1-202ENST00000444951 PLIN3O60664 434 aa16.65■□□□□ 0.26
LIME1-202ENST00000444951 SMIM24O75264 130 aa16.65■□□□□ 0.26
LIME1-202ENST00000444951 UBXN7O94888 489 aa16.65■□□□□ 0.26
LIME1-202ENST00000444951 PROCP04070 461 aa16.65■□□□□ 0.26
LIME1-202ENST00000444951 POLR2CP19387 275 aaPredicted RBP16.65■□□□□ 0.26
LIME1-202ENST00000444951 IMPA1P29218 277 aa16.65■□□□□ 0.26
LIME1-202ENST00000444951 SHMT2P34897 504 aa16.65■□□□□ 0.26
LIME1-202ENST00000444951 RAB28P51157 221 aa16.65■□□□□ 0.26
LIME1-202ENST00000444951 PNLIPRP1P54315 467 aa16.65■□□□□ 0.26
LIME1-202ENST00000444951 AP1S2P56377 157 aa16.65■□□□□ 0.26
LIME1-202ENST00000444951 FASTKQ14296 549 aaKnown RBP16.65■□□□□ 0.26
LIME1-202ENST00000444951 PFKFB4Q16877 469 aa16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms