RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 CCNKO75909 580 aa16.81■□□□□ 0.28
PTPRF-209ENST00000438120 GBAP04062 536 aa16.81■□□□□ 0.28
PTPRF-209ENST00000438120 PGRP06401 933 aa16.81■□□□□ 0.28
PTPRF-209ENST00000438120 ERVK-8P63133 956 aa16.81■□□□□ 0.28
PTPRF-209ENST00000438120 PRAMEF14Q5SWL7 426 aa16.81■□□□□ 0.28
PTPRF-209ENST00000438120 PRAMEF13Q5VWM6 474 aa16.81■□□□□ 0.28
PTPRF-209ENST00000438120 GJD3Q8N144 294 aa16.81■□□□□ 0.28
PTPRF-209ENST00000438120 COL21A1Q96P44 957 aa16.81■□□□□ 0.28
PTPRF-209ENST00000438120 FZD4Q9ULV1 537 aa16.81■□□□□ 0.28
PTPRF-209ENST00000438120 PGLSO95336 258 aa16.81■□□□□ 0.28
PTPRF-209ENST00000438120 MLLT3P42568 568 aaPredicted RBP16.81■□□□□ 0.28
PTPRF-209ENST00000438120 CEBPGP53567 150 aa16.81■□□□□ 0.28
PTPRF-209ENST00000438120 CYP1B1Q16678 543 aa16.81■□□□□ 0.28
PTPRF-209ENST00000438120 C1orf52Q8N6N3 182 aaKnown RBP16.81■□□□□ 0.28
PTPRF-209ENST00000438120 FAM46DQ8NEK8 389 aa16.81■□□□□ 0.28
PTPRF-209ENST00000438120 SLC35B2Q8TB61 432 aa16.81■□□□□ 0.28
PTPRF-209ENST00000438120 WFIKKN2Q8TEU8 576 aa16.81■□□□□ 0.28
PTPRF-209ENST00000438120 DCAKDQ8WVC6 231 aa16.81■□□□□ 0.28
PTPRF-209ENST00000438120 KCNC2Q96PR1 638 aa16.81■□□□□ 0.28
PTPRF-209ENST00000438120 COMMD4Q9H0A8 199 aa16.81■□□□□ 0.28
PTPRF-209ENST00000438120 SNTG1Q9NSN8 517 aa16.81■□□□□ 0.28
PTPRF-209ENST00000438120 CLCA3PQ9Y6N3 262 aa16.81■□□□□ 0.28
PTPRF-209ENST00000438120 A0A1W2PQ72 361 aa16.8■□□□□ 0.28
PTPRF-209ENST00000438120 ANXA2P2A6NMY6 339 aa16.8■□□□□ 0.28
PTPRF-209ENST00000438120 REM1O75628 298 aa16.8■□□□□ 0.28
PTPRF-209ENST00000438120 ANXA2P07355 339 aaKnown RBP16.8■□□□□ 0.28
PTPRF-209ENST00000438120 JAG1P78504 1218 aa16.8■□□□□ 0.28
PTPRF-209ENST00000438120 OC90Q02509 493 aaPredicted RBP16.8■□□□□ 0.28
PTPRF-209ENST00000438120 PTPRCAPQ14761 206 aa16.8■□□□□ 0.28
PTPRF-209ENST00000438120 TEAD2Q15562 447 aa16.8■□□□□ 0.28
PTPRF-209ENST00000438120 RBM20Q5T481 1227 aaKnown RBP16.8■□□□□ 0.28
PTPRF-209ENST00000438120 GRASPQ7Z6J2 395 aaPredicted RBP16.8■□□□□ 0.28
PTPRF-209ENST00000438120 GORASP1Q9BQQ3 440 aa16.8■□□□□ 0.28
PTPRF-209ENST00000438120 CXorf21Q9HAI6 301 aa16.8■□□□□ 0.28
PTPRF-209ENST00000438120 IL1RAPQ9NPH3 570 aa16.8■□□□□ 0.28
PTPRF-209ENST00000438120 GMEB2Q9UKD1 530 aa16.8■□□□□ 0.28
PTPRF-209ENST00000438120 DPPA5A6NC42 116 aa16.8■□□□□ 0.28
PTPRF-209ENST00000438120 GKP32189 559 aa16.8■□□□□ 0.28
PTPRF-209ENST00000438120 GMFBP60983 142 aa16.8■□□□□ 0.28
PTPRF-209ENST00000438120 OGDHQ02218 1023 aa16.8■□□□□ 0.28
PTPRF-209ENST00000438120 HSF2Q03933 536 aa16.8■□□□□ 0.28
PTPRF-209ENST00000438120 CBFBQ13951 182 aa16.8■□□□□ 0.28
PTPRF-209ENST00000438120 NXPE1Q8N323 547 aa16.8■□□□□ 0.28
PTPRF-209ENST00000438120 GLB1L3Q8NCI6 653 aaPredicted RBP16.8■□□□□ 0.28
PTPRF-209ENST00000438120 ETAA1Q9NY74 926 aa16.8■□□□□ 0.28
PTPRF-209ENST00000438120 RIMKLBQ9ULI2 386 aa16.8■□□□□ 0.28
PTPRF-209ENST00000438120 SNX7Q9UNH6 387 aa16.8■□□□□ 0.28
PTPRF-209ENST00000438120 A0A0U1RQF3 1178 aa16.8■□□□□ 0.28
PTPRF-209ENST00000438120 ILVBLA1L0T0 632 aa16.8■□□□□ 0.28
PTPRF-209ENST00000438120 MPZL2O60487 215 aa16.8■□□□□ 0.28
PTPRF-209ENST00000438120 ZNF432O94892 652 aa16.8■□□□□ 0.28
PTPRF-209ENST00000438120 RAP2AP10114 183 aa16.8■□□□□ 0.28
PTPRF-209ENST00000438120 ADGRE1Q14246 886 aa16.8■□□□□ 0.28
PTPRF-209ENST00000438120 MBOAT1Q6ZNC8 495 aa16.8■□□□□ 0.28
PTPRF-209ENST00000438120 NUDT13Q86X67 352 aa16.8■□□□□ 0.28
PTPRF-209ENST00000438120 ZFP3Q96NJ6 502 aa16.8■□□□□ 0.28
PTPRF-209ENST00000438120 EBF2Q9HAK2 575 aa16.8■□□□□ 0.28
PTPRF-209ENST00000438120 HLA-EP13747 358 aa16.8■□□□□ 0.28
PTPRF-209ENST00000438120 SLC39A4Q6P5W5 647 aa16.8■□□□□ 0.28
PTPRF-209ENST00000438120 ULK3Q6PHR2 472 aa16.8■□□□□ 0.28
PTPRF-209ENST00000438120 TMEM110Q86TL2 294 aa16.8■□□□□ 0.28
PTPRF-209ENST00000438120 OR2AP1Q8NGE2 309 aa16.8■□□□□ 0.28
PTPRF-209ENST00000438120 OR10Q1Q8NGQ4 319 aa16.8■□□□□ 0.28
PTPRF-209ENST00000438120 OR2AJ1Q8NGZ0 328 aa16.8■□□□□ 0.28
PTPRF-209ENST00000438120 OR52B2Q96RD2 323 aa16.8■□□□□ 0.28
PTPRF-209ENST00000438120 CCM2Q9BSQ5 444 aa16.8■□□□□ 0.28
PTPRF-209ENST00000438120 MAF1Q9H063 256 aa16.8■□□□□ 0.28
PTPRF-209ENST00000438120 POLR2J3Q9H1A7 115 aaKnown RBP16.8■□□□□ 0.28
PTPRF-209ENST00000438120 KCNK6Q9Y257 313 aa16.8■□□□□ 0.28
PTPRF-209ENST00000438120 ATP1B2P14415 290 aaPredicted RBP16.8■□□□□ 0.28
PTPRF-209ENST00000438120 ENGP17813 658 aa16.8■□□□□ 0.28
PTPRF-209ENST00000438120 ACVR2AP27037 513 aa16.8■□□□□ 0.28
PTPRF-209ENST00000438120 ASB3Q9Y575 518 aa16.8■□□□□ 0.28
PTPRF-209ENST00000438120 A0A1W2PRG6 482 aa16.79■□□□□ 0.28
PTPRF-209ENST00000438120 DAPL1A0PJW8 107 aa16.79■□□□□ 0.28
PTPRF-209ENST00000438120 ELOA3DA6NLF2 546 aaPredicted RBP16.79■□□□□ 0.28
PTPRF-209ENST00000438120 EI24O14681 340 aa16.79■□□□□ 0.28
PTPRF-209ENST00000438120 KHNYNO15037 678 aaKnown RBP16.79■□□□□ 0.28
PTPRF-209ENST00000438120 WDR4P57081 412 aaKnown RBP16.79■□□□□ 0.28
PTPRF-209ENST00000438120 E2F2Q14209 437 aa16.79■□□□□ 0.28
PTPRF-209ENST00000438120 GRM2Q14416 872 aa16.79■□□□□ 0.28
PTPRF-209ENST00000438120 ELOA3BQ3SY89 546 aa16.79■□□□□ 0.28
PTPRF-209ENST00000438120 GLIS1Q8NBF1 620 aa16.79■□□□□ 0.28
PTPRF-209ENST00000438120 ELOA3Q8NG57 546 aa16.79■□□□□ 0.28
PTPRF-209ENST00000438120 GTPBP2Q9BX10 602 aaKnown RBP16.79■□□□□ 0.28
PTPRF-209ENST00000438120 STOML2Q9UJZ1 356 aa16.79■□□□□ 0.28
PTPRF-209ENST00000438120 JUNP05412 331 aaKnown RBP16.79■□□□□ 0.28
PTPRF-209ENST00000438120 SLC11A1P49279 550 aa16.79■□□□□ 0.28
PTPRF-209ENST00000438120 TSPAN5P62079 268 aa16.79■□□□□ 0.28
PTPRF-209ENST00000438120 GPR33Q49SQ1 333 aa16.79■□□□□ 0.28
PTPRF-209ENST00000438120 STX12Q86Y82 276 aa16.79■□□□□ 0.28
PTPRF-209ENST00000438120 RASGRP3Q8IV61 690 aa16.79■□□□□ 0.28
PTPRF-209ENST00000438120 INSL6Q9Y581 213 aa16.79■□□□□ 0.28
PTPRF-209ENST00000438120 INMTO95050 263 aa16.79■□□□□ 0.28
PTPRF-209ENST00000438120 AHSGP02765 367 aa16.79■□□□□ 0.28
PTPRF-209ENST00000438120 RAB43Q86YS6 212 aa16.79■□□□□ 0.28
PTPRF-209ENST00000438120 OR4E2Q8NGC2 313 aa16.79■□□□□ 0.28
PTPRF-209ENST00000438120 OR5M3Q8NGP4 307 aa16.79■□□□□ 0.28
PTPRF-209ENST00000438120 TRIM2Q9C040 744 aa16.79■□□□□ 0.28
PTPRF-209ENST00000438120 FBXL12Q9NXK8 326 aa16.79■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms