RNA–Protein interactions for RNA: ENST00000437600.8

CUX1-206, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 3,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-206ENST00000437600 CENPNQ96H22 339 aaPredicted RBP9.23□□□□□ -0.93
CUX1-206ENST00000437600 APOLD1Q96LR9 279 aa9.23□□□□□ -0.93
CUX1-206ENST00000437600 NSMCE2Q96MF7 247 aa9.23□□□□□ -0.93
CUX1-206ENST00000437600 C1QTNF3Q9BXJ4 246 aa9.23□□□□□ -0.93
CUX1-206ENST00000437600 CLDND1Q9NY35 253 aa9.23□□□□□ -0.93
CUX1-206ENST00000437600 NUDT4Q9NZJ9 180 aa9.23□□□□□ -0.93
CUX1-206ENST00000437600 HS3ST2Q9Y278 367 aa9.23□□□□□ -0.93
CUX1-206ENST00000437600 MYRFQ9Y2G1 1151 aa9.23□□□□□ -0.93
CUX1-206ENST00000437600 H3BQ06 376 aaPredicted RBP9.23□□□□□ -0.93
CUX1-206ENST00000437600 AP1G1O43747 822 aa9.23□□□□□ -0.93
CUX1-206ENST00000437600 PGRP06401 933 aa9.23□□□□□ -0.93
CUX1-206ENST00000437600 POLR2EP19388 210 aaKnown RBP9.23□□□□□ -0.93
CUX1-206ENST00000437600 CDKN2CP42773 168 aa9.23□□□□□ -0.93
CUX1-206ENST00000437600 RECQLP46063 649 aaPredicted RBP9.23□□□□□ -0.93
CUX1-206ENST00000437600 GNPDA1P46926 289 aa9.23□□□□□ -0.93
CUX1-206ENST00000437600 EPHA5P54756 1037 aa9.23□□□□□ -0.93
CUX1-206ENST00000437600 CARD16Q5EG05 197 aa9.23□□□□□ -0.93
CUX1-206ENST00000437600 GPR65Q8IYL9 337 aa9.23□□□□□ -0.93
CUX1-206ENST00000437600 GTF2H4Q92759 462 aa9.23□□□□□ -0.93
CUX1-206ENST00000437600 NCLNQ969V3 563 aa9.23□□□□□ -0.93
CUX1-206ENST00000437600 NXPE3Q969Y0 559 aa9.23□□□□□ -0.93
CUX1-206ENST00000437600 MUS81Q96NY9 551 aa9.23□□□□□ -0.93
CUX1-206ENST00000437600 TRIM54Q9BYV2 358 aa9.23□□□□□ -0.93
CUX1-206ENST00000437600 ACPTQ9BZG2 426 aa9.23□□□□□ -0.93
CUX1-206ENST00000437600 NTN4Q9HB63 628 aa9.23□□□□□ -0.93
CUX1-206ENST00000437600 ADGRE2Q9UHX3 823 aa9.23□□□□□ -0.93
CUX1-206ENST00000437600 MAFFQ9ULX9 164 aa9.23□□□□□ -0.93
CUX1-206ENST00000437600 CDC14AQ9UNH5 594 aa9.23□□□□□ -0.93
CUX1-206ENST00000437600 ERVK-11Q9UQG0 969 aa9.23□□□□□ -0.93
CUX1-206ENST00000437600 PCDHB14Q9Y5E9 798 aa9.23□□□□□ -0.93
CUX1-206ENST00000437600 FADS3Q9Y5Q0 445 aa9.23□□□□□ -0.93
CUX1-206ENST00000437600 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP9.22□□□□□ -0.93
CUX1-206ENST00000437600 AQP12BA6NM10 295 aa9.22□□□□□ -0.93
CUX1-206ENST00000437600 H3BNH8 94 aa9.22□□□□□ -0.93
CUX1-206ENST00000437600 GSTA4O15217 222 aa9.22□□□□□ -0.93
CUX1-206ENST00000437600 VPS4BO75351 444 aa9.22□□□□□ -0.93
CUX1-206ENST00000437600 PRKD3O94806 890 aa9.22□□□□□ -0.93
CUX1-206ENST00000437600 CTSLP07711 333 aa9.22□□□□□ -0.93
CUX1-206ENST00000437600 HNRNPCP07910 306 aaKnown RBP eCLIP9.22□□□□□ -0.937e-7■■□□□ 13.7
CUX1-206ENST00000437600 BCKDHAP12694 445 aa9.22□□□□□ -0.93
CUX1-206ENST00000437600 EEF1B2P24534 225 aaKnown RBP9.22□□□□□ -0.93
CUX1-206ENST00000437600 VARSP26640 1264 aaKnown RBP9.22□□□□□ -0.93
CUX1-206ENST00000437600 HALP42357 657 aa9.22□□□□□ -0.93
CUX1-206ENST00000437600 CLCN2P51788 898 aa9.22□□□□□ -0.93
CUX1-206ENST00000437600 CTBSQ01459 385 aa9.22□□□□□ -0.93
CUX1-206ENST00000437600 SLC14A1Q13336 389 aa9.22□□□□□ -0.93
CUX1-206ENST00000437600 C16orf72Q14CZ0 275 aa9.22□□□□□ -0.93
CUX1-206ENST00000437600 NEDD8Q15843 81 aa9.22□□□□□ -0.93
CUX1-206ENST00000437600 SYCE2Q6PIF2 218 aa9.22□□□□□ -0.93
CUX1-206ENST00000437600 AQP12AQ8IXF9 295 aa9.22□□□□□ -0.93
CUX1-206ENST00000437600 MSRB3Q8IXL7 192 aa9.22□□□□□ -0.93
CUX1-206ENST00000437600 ANKFN1Q8N957 763 aa9.22□□□□□ -0.93
CUX1-206ENST00000437600 STON2Q8WXE9 905 aa9.22□□□□□ -0.93
CUX1-206ENST00000437600 SAMD11Q96NU1 681 aa9.22□□□□□ -0.93
CUX1-206ENST00000437600 NUSAP1Q9BXS6 441 aaKnown RBP9.22□□□□□ -0.93
CUX1-206ENST00000437600 NAA50Q9GZZ1 169 aaKnown RBP9.22□□□□□ -0.93
CUX1-206ENST00000437600 LRTM1Q9HBL6 345 aa9.22□□□□□ -0.93
CUX1-206ENST00000437600 GPRC5BQ9NZH0 403 aa9.22□□□□□ -0.93
CUX1-206ENST00000437600 EBF1Q9UH73 591 aa9.22□□□□□ -0.93
CUX1-206ENST00000437600 COQ6Q9Y2Z9 468 aa9.22□□□□□ -0.93
CUX1-206ENST00000437600 PCDHB1Q9Y5F3 818 aa9.22□□□□□ -0.93
CUX1-206ENST00000437600 TNPO3Q9Y5L0 923 aaKnown RBP9.22□□□□□ -0.93
CUX1-206ENST00000437600 NUMA1Q14980 2115 aa9.22□□□□□ -0.93
CUX1-206ENST00000437600 K7EPI3 171 aa9.22□□□□□ -0.93
CUX1-206ENST00000437600 KPNA3O00505 521 aaPredicted RBP9.22□□□□□ -0.93
CUX1-206ENST00000437600 LDLRP01130 860 aa9.22□□□□□ -0.93
CUX1-206ENST00000437600 CYP17A1P05093 508 aa9.22□□□□□ -0.93
CUX1-206ENST00000437600 PIM1P11309 404 aaPredicted RBP9.22□□□□□ -0.93
CUX1-206ENST00000437600 CDH2P19022 906 aaPredicted RBP9.22□□□□□ -0.93
CUX1-206ENST00000437600 TXNL4AP83876 142 aaKnown RBP9.22□□□□□ -0.93
CUX1-206ENST00000437600 KCNC3Q14003 757 aa9.22□□□□□ -0.93
CUX1-206ENST00000437600 ELMSAN1Q6PJG2 1045 aa9.22□□□□□ -0.93
CUX1-206ENST00000437600 HSD11B1LQ7Z5J1 315 aa9.22□□□□□ -0.93
CUX1-206ENST00000437600 PARP8Q8N3A8 854 aa9.22□□□□□ -0.93
CUX1-206ENST00000437600 OR2T12Q8NG77 320 aa9.22□□□□□ -0.93
CUX1-206ENST00000437600 SLC13A3Q8WWT9 602 aa9.22□□□□□ -0.93
CUX1-206ENST00000437600 FGF13Q92913 245 aa9.22□□□□□ -0.93
CUX1-206ENST00000437600 TMBIM1Q969X1 311 aa9.22□□□□□ -0.93
CUX1-206ENST00000437600 MED8Q96G25 268 aa9.22□□□□□ -0.93
CUX1-206ENST00000437600 UHRF1Q96T88 793 aaPredicted RBP9.22□□□□□ -0.93
CUX1-206ENST00000437600 WRAP53Q9BUR4 548 aaKnown RBP9.22□□□□□ -0.93
CUX1-206ENST00000437600 ZNF696Q9H7X3 374 aa9.22□□□□□ -0.93
CUX1-206ENST00000437600 PARVBQ9HBI1 364 aa9.22□□□□□ -0.93
CUX1-206ENST00000437600 PFDN4Q9NQP4 134 aa9.22□□□□□ -0.93
CUX1-206ENST00000437600 RABL2AQ9UBK7 228 aaPredicted RBP9.22□□□□□ -0.93
CUX1-206ENST00000437600 ERVW-1Q9UQF0 538 aa9.22□□□□□ -0.93
CUX1-206ENST00000437600 INVSQ9Y283 1065 aa9.22□□□□□ -0.93
CUX1-206ENST00000437600 OARD1Q9Y530 152 aa9.22□□□□□ -0.93
CUX1-206ENST00000437600 CEPT1Q9Y6K0 416 aa9.22□□□□□ -0.93
CUX1-206ENST00000437600 PRRT4C9JH25 899 aa9.21□□□□□ -0.93
CUX1-206ENST00000437600 MANBAO00462 879 aa9.21□□□□□ -0.93
CUX1-206ENST00000437600 MAN1A2O60476 641 aa9.21□□□□□ -0.93
CUX1-206ENST00000437600 TULP3O75386 442 aa9.21□□□□□ -0.93
CUX1-206ENST00000437600 C1SP09871 688 aa9.21□□□□□ -0.93
CUX1-206ENST00000437600 PDHA2P29803 388 aa9.21□□□□□ -0.93
CUX1-206ENST00000437600 MTHFRP42898 656 aa9.21□□□□□ -0.93
CUX1-206ENST00000437600 SH3BGRP55822 239 aaPredicted RBP9.21□□□□□ -0.93
CUX1-206ENST00000437600 SPIDRQ14159 915 aa9.21□□□□□ -0.93
CUX1-206ENST00000437600 PDCD4Q53EL6 469 aaKnown RBP9.21□□□□□ -0.93
CUX1-206ENST00000437600 CYBRD1Q53TN4 286 aa9.21□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms