RNA–Protein interactions for RNA: ENST00000413442.5

USP54-202, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 543 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-202ENST00000413442 ELK3P41970 407 aa6.16□□□□□ -1.42
USP54-202ENST00000413442 ITGA8P53708 1063 aa6.16□□□□□ -1.42
USP54-202ENST00000413442 RRADP55042 308 aa6.16□□□□□ -1.42
USP54-202ENST00000413442 SH3BP2P78314 561 aa6.16□□□□□ -1.42
USP54-202ENST00000413442 DCDP81605 110 aaKnown RBP6.16□□□□□ -1.42
USP54-202ENST00000413442 DHX9Q08211 1270 aaKnown RBP6.16□□□□□ -1.42
USP54-202ENST00000413442 CTBP1Q13363 440 aa6.16□□□□□ -1.42
USP54-202ENST00000413442 NAB1Q13506 487 aa6.16□□□□□ -1.42
USP54-202ENST00000413442 DNASE1L3Q13609 305 aa6.16□□□□□ -1.42
USP54-202ENST00000413442 GRB7Q14451 532 aa6.16□□□□□ -1.42
USP54-202ENST00000413442 BRD3Q15059 726 aa6.16□□□□□ -1.42
USP54-202ENST00000413442 UGT8Q16880 541 aa6.16□□□□□ -1.42
USP54-202ENST00000413442 BBS9Q3SYG4 887 aa6.16□□□□□ -1.42
USP54-202ENST00000413442 SOWAHCQ53LP3 525 aaPredicted RBP6.16□□□□□ -1.42
USP54-202ENST00000413442 CTSL3PQ5NE16 218 aa6.16□□□□□ -1.42
USP54-202ENST00000413442 DUPD1Q68J44 220 aa6.16□□□□□ -1.42
USP54-202ENST00000413442 PWWP2BQ6NUJ5 590 aa6.16□□□□□ -1.42
USP54-202ENST00000413442 PRMT9Q6P2P2 845 aa6.16□□□□□ -1.42
USP54-202ENST00000413442 FIGLAQ6QHK4 219 aa6.16□□□□□ -1.42
USP54-202ENST00000413442 CYHR1Q6ZMK1 362 aa6.16□□□□□ -1.42
USP54-202ENST00000413442 MED25Q71SY5 747 aa6.16□□□□□ -1.42
USP54-202ENST00000413442 RELL1Q8IUW5 271 aa6.16□□□□□ -1.42
USP54-202ENST00000413442 MCATQ8IVS2 390 aaKnown RBP6.16□□□□□ -1.42
USP54-202ENST00000413442 DSELQ8IZU8 1212 aa6.16□□□□□ -1.42
USP54-202ENST00000413442 KRT222Q8N1A0 295 aa6.16□□□□□ -1.42
USP54-202ENST00000413442 MYO1HQ8N1T3 1032 aa6.16□□□□□ -1.42
USP54-202ENST00000413442 TBC1D19Q8N5T2 526 aa6.16□□□□□ -1.42
USP54-202ENST00000413442 ZNF655Q8N720 491 aaPredicted RBP6.16□□□□□ -1.42
USP54-202ENST00000413442 TMEM102Q8N9M5 508 aaPredicted RBP6.16□□□□□ -1.42
USP54-202ENST00000413442 OR2A1Q8NGT9 310 aa6.16□□□□□ -1.42
USP54-202ENST00000413442 FLVCR1-AS1Q8TAF5 88 aa6.16□□□□□ -1.42
USP54-202ENST00000413442 FKBP10Q96AY3 582 aa6.16□□□□□ -1.42
USP54-202ENST00000413442 TRIM44Q96DX7 344 aaPredicted RBP6.16□□□□□ -1.42
USP54-202ENST00000413442 TSPAN17Q96FV3 270 aa6.16□□□□□ -1.42
USP54-202ENST00000413442 SEC16BQ96JE7 1060 aa6.16□□□□□ -1.42
USP54-202ENST00000413442 CAPZA3Q96KX2 299 aa6.16□□□□□ -1.42
USP54-202ENST00000413442 ZNF285Q96NJ3 590 aa6.16□□□□□ -1.42
USP54-202ENST00000413442 MIPEPQ99797 713 aa6.16□□□□□ -1.42
USP54-202ENST00000413442 HAUS8Q9BT25 410 aa6.16□□□□□ -1.42
USP54-202ENST00000413442 HGH1Q9BTY7 390 aa6.16□□□□□ -1.42
USP54-202ENST00000413442 CAPS2Q9BXY5 557 aa6.16□□□□□ -1.42
USP54-202ENST00000413442 SLC26A1Q9H2B4 701 aa6.16□□□□□ -1.42
USP54-202ENST00000413442 WDR54Q9H977 334 aa6.16□□□□□ -1.42
USP54-202ENST00000413442 ACTR5Q9H9F9 607 aaPredicted RBP6.16□□□□□ -1.42
USP54-202ENST00000413442 PARVBQ9HBI1 364 aa6.16□□□□□ -1.42
USP54-202ENST00000413442 APMAPQ9HDC9 416 aa6.16□□□□□ -1.42
USP54-202ENST00000413442 TMEM184CQ9NVA4 438 aa6.16□□□□□ -1.42
USP54-202ENST00000413442 EURLQ9NYK6 297 aa6.16□□□□□ -1.42
USP54-202ENST00000413442 ZFATQ9P243 1243 aa6.16□□□□□ -1.42
USP54-202ENST00000413442 TXNDC16Q9P2K2 825 aa6.16□□□□□ -1.42
USP54-202ENST00000413442 FAM8A1Q9UBU6 413 aa6.16□□□□□ -1.42
USP54-202ENST00000413442 TRMT6Q9UJA5 497 aaKnown RBP6.16□□□□□ -1.42
USP54-202ENST00000413442 NXT1Q9UKK6 140 aaKnown RBP6.16□□□□□ -1.42
USP54-202ENST00000413442 PYCARDQ9ULZ3 195 aa6.16□□□□□ -1.42
USP54-202ENST00000413442 POLHQ9Y253 713 aa6.16□□□□□ -1.42
USP54-202ENST00000413442 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP6.16□□□□□ -1.42
USP54-202ENST00000413442 PMS2P1A4D2B8 440 aa6.15□□□□□ -1.42
USP54-202ENST00000413442 IQCF5A8MTL0 148 aa6.15□□□□□ -1.42
USP54-202ENST00000413442 B8ZZF3 427 aa6.15□□□□□ -1.42
USP54-202ENST00000413442 TMEM150CB9EJG8 249 aa6.15□□□□□ -1.42
USP54-202ENST00000413442 MKRN2OSH3BPM6 223 aa6.15□□□□□ -1.42
USP54-202ENST00000413442 CDK2AP1O14519 115 aa6.15□□□□□ -1.42
USP54-202ENST00000413442 NIPSNAP2O75323 286 aa6.15□□□□□ -1.42
USP54-202ENST00000413442 EZRP15311 586 aaKnown RBP6.15□□□□□ -1.42
USP54-202ENST00000413442 IL10P22301 178 aa6.15□□□□□ -1.42
USP54-202ENST00000413442 GSTM2P28161 218 aa6.15□□□□□ -1.42
USP54-202ENST00000413442 HPDP32754 393 aaPredicted RBP6.15□□□□□ -1.42
USP54-202ENST00000413442 RPA3P35244 121 aaPredicted RBP6.15□□□□□ -1.42
USP54-202ENST00000413442 RORAP35398 523 aa6.15□□□□□ -1.42
USP54-202ENST00000413442 GRK3P35626 688 aa6.15□□□□□ -1.42
USP54-202ENST00000413442 GRIA3P42263 894 aa6.15□□□□□ -1.42
USP54-202ENST00000413442 SLC1A2P43004 574 aa6.15□□□□□ -1.42
USP54-202ENST00000413442 GABRA4P48169 554 aa6.15□□□□□ -1.42
USP54-202ENST00000413442 CARSP49589 748 aaKnown RBP6.15□□□□□ -1.42
USP54-202ENST00000413442 HNMTP50135 292 aa6.15□□□□□ -1.42
USP54-202ENST00000413442 PNLIPRP1P54315 467 aa6.15□□□□□ -1.42
USP54-202ENST00000413442 SLC12A2P55011 1212 aa6.15□□□□□ -1.42
USP54-202ENST00000413442 CSE1LP55060 971 aaKnown RBP6.15□□□□□ -1.42
USP54-202ENST00000413442 SOX8P57073 446 aa6.15□□□□□ -1.42
USP54-202ENST00000413442 AP2B1P63010 937 aa6.15□□□□□ -1.42
USP54-202ENST00000413442 SKP1P63208 163 aa6.15□□□□□ -1.42
USP54-202ENST00000413442 CDKL1Q00532 357 aa6.15□□□□□ -1.42
USP54-202ENST00000413442 POU4F1Q01851 419 aa6.15□□□□□ -1.42
USP54-202ENST00000413442 CDC20Q12834 499 aa6.15□□□□□ -1.42
USP54-202ENST00000413442 PDIA2Q13087 525 aaKnown RBP6.15□□□□□ -1.42
USP54-202ENST00000413442 PDAP1Q13442 181 aaKnown RBP6.15□□□□□ -1.42
USP54-202ENST00000413442 FAM53BQ14153 422 aa6.15□□□□□ -1.42
USP54-202ENST00000413442 TBR1Q16650 682 aa6.15□□□□□ -1.42
USP54-202ENST00000413442 MUM1Q2TAK8 710 aa6.15□□□□□ -1.42
USP54-202ENST00000413442 GRTP1Q5TC63 336 aa6.15□□□□□ -1.42
USP54-202ENST00000413442 DUS1LQ6P1R4 473 aaKnown RBP6.15□□□□□ -1.42
USP54-202ENST00000413442 ZNF549Q6P9A3 640 aa6.15□□□□□ -1.42
USP54-202ENST00000413442 CES3Q6UWW8 571 aa6.15□□□□□ -1.42
USP54-202ENST00000413442 SYT10Q6XYQ8 523 aa6.15□□□□□ -1.42
USP54-202ENST00000413442 CDHR3Q6ZTQ4 885 aa6.15□□□□□ -1.42
USP54-202ENST00000413442 LDB1Q86U70 411 aaPredicted RBP6.15□□□□□ -1.42
USP54-202ENST00000413442 RAB43Q86YS6 212 aa6.15□□□□□ -1.42
USP54-202ENST00000413442 VRK3Q8IV63 474 aa6.15□□□□□ -1.42
USP54-202ENST00000413442 DENND6AQ8IWF6 608 aa6.15□□□□□ -1.42
USP54-202ENST00000413442 HOMEZQ8IX15 550 aa6.15□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms