RNA–Protein interactions for RNA: ENST00000410093.5

LIMS1-205, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,526 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-205ENST00000410093 AKAP10O43572 662 aa13.21□□□□□ -0.29
LIMS1-205ENST00000410093 KIF1CO43896 1103 aaKnown RBP13.21□□□□□ -0.29
LIMS1-205ENST00000410093 VEGFDO43915 354 aa13.21□□□□□ -0.29
LIMS1-205ENST00000410093 RNASEH1O60930 286 aaKnown RBP13.21□□□□□ -0.29
LIMS1-205ENST00000410093 PGRP06401 933 aa13.21□□□□□ -0.29
LIMS1-205ENST00000410093 EPORP19235 508 aa13.21□□□□□ -0.29
LIMS1-205ENST00000410093 FSHRP23945 695 aa13.21□□□□□ -0.29
LIMS1-205ENST00000410093 CASP2P42575 452 aa13.21□□□□□ -0.29
LIMS1-205ENST00000410093 RPS14P62263 151 aaKnown RBP13.21□□□□□ -0.29
LIMS1-205ENST00000410093 SEMG2Q02383 582 aa13.21□□□□□ -0.29
LIMS1-205ENST00000410093 LRRC74AQ0VAA2 488 aa13.21□□□□□ -0.29
LIMS1-205ENST00000410093 ABRQ12979 859 aa13.21□□□□□ -0.29
LIMS1-205ENST00000410093 GTF2H3Q13889 308 aa13.21□□□□□ -0.29
LIMS1-205ENST00000410093 SMAD2Q15796 467 aaKnown RBP13.21□□□□□ -0.29
LIMS1-205ENST00000410093 FNDC3BQ53EP0 1204 aaKnown RBP13.21□□□□□ -0.29
LIMS1-205ENST00000410093 TMTC4Q5T4D3 741 aa13.21□□□□□ -0.29
LIMS1-205ENST00000410093 ATG9BQ674R7 924 aa13.21□□□□□ -0.29
LIMS1-205ENST00000410093 FBXL19Q6PCT2 694 aa13.21□□□□□ -0.29
LIMS1-205ENST00000410093 UGT2A3Q6UWM9 527 aa13.21□□□□□ -0.29
LIMS1-205ENST00000410093 PARS2Q7L3T8 475 aaKnown RBP13.21□□□□□ -0.29
LIMS1-205ENST00000410093 DET1Q7L5Y6 550 aa13.21□□□□□ -0.29
LIMS1-205ENST00000410093 LIX1Q8N485 282 aa13.21□□□□□ -0.29
LIMS1-205ENST00000410093 CPA6Q8N4T0 437 aa13.21□□□□□ -0.29
LIMS1-205ENST00000410093 DCBLD1Q8N8Z6 715 aa13.21□□□□□ -0.29
LIMS1-205ENST00000410093 MFSD2AQ8NA29 543 aa13.21□□□□□ -0.29
LIMS1-205ENST00000410093 ITFG1Q8TB96 612 aa13.21□□□□□ -0.29
LIMS1-205ENST00000410093 LRTOMTQ8WZ04 291 aa13.21□□□□□ -0.29
LIMS1-205ENST00000410093 NSMCE2Q96MF7 247 aa13.21□□□□□ -0.29
LIMS1-205ENST00000410093 GBP5Q96PP8 586 aa13.21□□□□□ -0.29
LIMS1-205ENST00000410093 P2RY13Q9BPV8 354 aa13.21□□□□□ -0.29
LIMS1-205ENST00000410093 KCNH6Q9H252 994 aa13.21□□□□□ -0.29
LIMS1-205ENST00000410093 GORASP2Q9H8Y8 452 aa13.21□□□□□ -0.29
LIMS1-205ENST00000410093 ZFC3H1O60293 1989 aaKnown RBP13.21□□□□□ -0.3
LIMS1-205ENST00000410093 ZNF839A8K0R7 811 aa13.2□□□□□ -0.3
LIMS1-205ENST00000410093 FFAR3O14843 346 aa13.2□□□□□ -0.3
LIMS1-205ENST00000410093 AREL1O15033 823 aa13.2□□□□□ -0.3
LIMS1-205ENST00000410093 NPC1O15118 1278 aa13.2□□□□□ -0.3
LIMS1-205ENST00000410093 GPR42O15529 346 aa13.2□□□□□ -0.3
LIMS1-205ENST00000410093 PDYNP01213 254 aa13.2□□□□□ -0.3
LIMS1-205ENST00000410093 UBTFL6P0CB48 400 aaPredicted RBP13.2□□□□□ -0.3
LIMS1-205ENST00000410093 IL1RNP18510 177 aa13.2□□□□□ -0.3
LIMS1-205ENST00000410093 PRPS1L1P21108 318 aa13.2□□□□□ -0.3
LIMS1-205ENST00000410093 TXNL4AP83876 142 aaKnown RBP13.2□□□□□ -0.3
LIMS1-205ENST00000410093 SRSF11Q05519 484 aaKnown RBP13.2□□□□□ -0.3
LIMS1-205ENST00000410093 E2F2Q14209 437 aa13.2□□□□□ -0.3
LIMS1-205ENST00000410093 CBX2Q14781 532 aaPredicted RBP13.2□□□□□ -0.3
LIMS1-205ENST00000410093 CPSF6Q16630 551 aaKnown RBP eCLIP13.2□□□□□ -0.3
LIMS1-205ENST00000410093 CYP51A1Q16850 503 aa13.2□□□□□ -0.3
LIMS1-205ENST00000410093 FAM78AQ5JUQ0 283 aa13.2□□□□□ -0.3
LIMS1-205ENST00000410093 C9orf64Q5T6V5 341 aa13.2□□□□□ -0.3
LIMS1-205ENST00000410093 FAM46CQ5VWP2 391 aa13.2□□□□□ -0.3
LIMS1-205ENST00000410093 GRHL2Q6ISB3 625 aa13.2□□□□□ -0.3
LIMS1-205ENST00000410093 SLC2A7Q6PXP3 512 aa13.2□□□□□ -0.3
LIMS1-205ENST00000410093 ZBTB49Q6ZSB9 765 aa13.2□□□□□ -0.3
LIMS1-205ENST00000410093 SPPL2CQ8IUH8 684 aa13.2□□□□□ -0.3
LIMS1-205ENST00000410093 ADHFE1Q8IWW8 467 aa13.2□□□□□ -0.3
LIMS1-205ENST00000410093 ADGRG5Q8IZF4 528 aa13.2□□□□□ -0.3
LIMS1-205ENST00000410093 RASGEF1AQ8N9B8 481 aa13.2□□□□□ -0.3
LIMS1-205ENST00000410093 GTF2H4Q92759 462 aa13.2□□□□□ -0.3
LIMS1-205ENST00000410093 ITCHQ96J02 903 aa13.2□□□□□ -0.3
LIMS1-205ENST00000410093 MSLNLQ96KJ4 702 aa13.2□□□□□ -0.3
LIMS1-205ENST00000410093 BDH2Q9BUT1 245 aa13.2□□□□□ -0.3
LIMS1-205ENST00000410093 HDAC8Q9BY41 377 aa13.2□□□□□ -0.3
LIMS1-205ENST00000410093 UGT2B28Q9BY64 529 aa13.2□□□□□ -0.3
LIMS1-205ENST00000410093 ACPTQ9BZG2 426 aa13.2□□□□□ -0.3
LIMS1-205ENST00000410093 DPEP2Q9H4A9 486 aa13.2□□□□□ -0.3
LIMS1-205ENST00000410093 ZNF696Q9H7X3 374 aa13.2□□□□□ -0.3
LIMS1-205ENST00000410093 PCDHGA11Q9Y5H2 935 aa13.2□□□□□ -0.3
LIMS1-205ENST00000410093 A0A096LPI6 279 aa13.19□□□□□ -0.3
LIMS1-205ENST00000410093 TCRBV5S2A0A599 114 aa13.19□□□□□ -0.3
LIMS1-205ENST00000410093 MYO1DO94832 1006 aa13.19□□□□□ -0.3
LIMS1-205ENST00000410093 FAM58BPP0C7Q3 252 aa13.19□□□□□ -0.3
LIMS1-205ENST00000410093 BCKDHAP12694 445 aa13.19□□□□□ -0.3
LIMS1-205ENST00000410093 CDH1P12830 882 aa13.19□□□□□ -0.3
LIMS1-205ENST00000410093 PSMC3P17980 439 aa13.19□□□□□ -0.3
LIMS1-205ENST00000410093 S100A3P33764 101 aa13.19□□□□□ -0.3
LIMS1-205ENST00000410093 ATXN3P54252 364 aaPredicted RBP13.19□□□□□ -0.3
LIMS1-205ENST00000410093 POLE2P56282 527 aa13.19□□□□□ -0.3
LIMS1-205ENST00000410093 PFN3P60673 137 aa13.19□□□□□ -0.3
LIMS1-205ENST00000410093 IRF8Q02556 426 aa13.19□□□□□ -0.3
LIMS1-205ENST00000410093 LRIF1Q5T3J3 769 aa13.19□□□□□ -0.3
LIMS1-205ENST00000410093 CES5AQ6NT32 575 aa13.19□□□□□ -0.3
LIMS1-205ENST00000410093 THOC6Q86W42 341 aaKnown RBP13.19□□□□□ -0.3
LIMS1-205ENST00000410093 VRK3Q8IV63 474 aa13.19□□□□□ -0.3
LIMS1-205ENST00000410093 NPAS3Q8IXF0 933 aa13.19□□□□□ -0.3
LIMS1-205ENST00000410093 TMEM132CQ8N3T6 1108 aa13.19□□□□□ -0.3
LIMS1-205ENST00000410093 BEND7Q8N7W2 519 aaPredicted RBP13.19□□□□□ -0.3
LIMS1-205ENST00000410093 SMRP1Q8NCR6 262 aa13.19□□□□□ -0.3
LIMS1-205ENST00000410093 VN1R2Q8NFZ6 395 aa13.19□□□□□ -0.3
LIMS1-205ENST00000410093 OR56A3Q8NH54 315 aa13.19□□□□□ -0.3
LIMS1-205ENST00000410093 SORCS1Q8WY21 1168 aa13.19□□□□□ -0.3
LIMS1-205ENST00000410093 NUS1Q96E22 293 aa13.19□□□□□ -0.3
LIMS1-205ENST00000410093 LRRC3BQ96PB8 259 aa13.19□□□□□ -0.3
LIMS1-205ENST00000410093 TMEM245Q9H330 911 aa13.19□□□□□ -0.3
LIMS1-205ENST00000410093 EPB41L1Q9H4G0 881 aa13.19□□□□□ -0.3
LIMS1-205ENST00000410093 COQ10BQ9H8M1 238 aa13.19□□□□□ -0.3
LIMS1-205ENST00000410093 TRIM39Q9HCM9 518 aa13.19□□□□□ -0.3
LIMS1-205ENST00000410093 ITM2CQ9NQX7 267 aa13.19□□□□□ -0.3
LIMS1-205ENST00000410093 CLEC1BQ9P126 229 aa13.19□□□□□ -0.3
LIMS1-205ENST00000410093 RUVBL1Q9Y265 456 aaKnown RBP13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms