RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 TLR4O00206 839 aa12.64□□□□□ -0.39
COL6A3-206ENST00000409809 ACKR2O00590 384 aa12.64□□□□□ -0.39
COL6A3-206ENST00000409809 PRPS1L1P21108 318 aa12.64□□□□□ -0.39
COL6A3-206ENST00000409809 RAB8AP61006 207 aa12.64□□□□□ -0.39
COL6A3-206ENST00000409809 FASTKD3Q14CZ7 662 aaKnown RBP12.64□□□□□ -0.39
COL6A3-206ENST00000409809 SUSD4Q5VX71 490 aa12.64□□□□□ -0.39
COL6A3-206ENST00000409809 C1orf186Q6ZWK4 172 aa12.64□□□□□ -0.39
COL6A3-206ENST00000409809 TTLQ8NG68 377 aa12.64□□□□□ -0.39
COL6A3-206ENST00000409809 OXSMQ9NWU1 459 aa12.64□□□□□ -0.39
COL6A3-206ENST00000409809 ARID1AO14497 2285 aa12.64□□□□□ -0.39
COL6A3-206ENST00000409809 RCBTB2O95199 551 aa12.64□□□□□ -0.39
COL6A3-206ENST00000409809 SGCGQ13326 291 aa12.64□□□□□ -0.39
COL6A3-206ENST00000409809 ZC3H12AQ5D1E8 599 aaKnown RBP12.64□□□□□ -0.39
COL6A3-206ENST00000409809 CDCA2Q69YH5 1023 aaPredicted RBP12.64□□□□□ -0.39
COL6A3-206ENST00000409809 BRINP3Q76B58 766 aa12.64□□□□□ -0.39
COL6A3-206ENST00000409809 YIPF4Q9BSR8 244 aa12.64□□□□□ -0.39
COL6A3-206ENST00000409809 ASB8Q9H765 288 aa12.64□□□□□ -0.39
COL6A3-206ENST00000409809 BAZ2AQ9UIF9 1905 aaKnown RBP12.63□□□□□ -0.39
COL6A3-206ENST00000409809 H7C417 338 aa12.63□□□□□ -0.39
COL6A3-206ENST00000409809 PRAMEF2O60811 474 aa12.63□□□□□ -0.39
COL6A3-206ENST00000409809 RPP40O75818 363 aaKnown RBP12.63□□□□□ -0.39
COL6A3-206ENST00000409809 UPK1BO75841 260 aa12.63□□□□□ -0.39
COL6A3-206ENST00000409809 PGAM2P15259 253 aa12.63□□□□□ -0.39
COL6A3-206ENST00000409809 CHRNB2P17787 502 aa12.63□□□□□ -0.39
COL6A3-206ENST00000409809 FECHP22830 423 aa12.63□□□□□ -0.39
COL6A3-206ENST00000409809 ACTA2P62736 377 aa12.63□□□□□ -0.39
COL6A3-206ENST00000409809 ACTG2P63267 376 aa12.63□□□□□ -0.39
COL6A3-206ENST00000409809 OR1J4Q8NGS1 313 aa12.63□□□□□ -0.39
COL6A3-206ENST00000409809 ALG3Q92685 438 aa12.63□□□□□ -0.39
COL6A3-206ENST00000409809 CNTNAP3BQ96NU0 1288 aa12.63□□□□□ -0.39
COL6A3-206ENST00000409809 CORO1BQ9BR76 489 aa12.63□□□□□ -0.39
COL6A3-206ENST00000409809 UCK2Q9BZX2 261 aa12.63□□□□□ -0.39
COL6A3-206ENST00000409809 EIF5A2Q9GZV4 153 aaKnown RBP12.63□□□□□ -0.39
COL6A3-206ENST00000409809 FAM53CQ9NYF3 392 aa12.63□□□□□ -0.39
COL6A3-206ENST00000409809 J3QRK9 145 aa12.63□□□□□ -0.39
COL6A3-206ENST00000409809 MITFO75030 526 aaPredicted RBP12.63□□□□□ -0.39
COL6A3-206ENST00000409809 RENP00797 406 aa12.63□□□□□ -0.39
COL6A3-206ENST00000409809 C8GP07360 202 aa12.63□□□□□ -0.39
COL6A3-206ENST00000409809 ATP5C1P36542 298 aaKnown RBP12.63□□□□□ -0.39
COL6A3-206ENST00000409809 DGKQP52824 942 aa12.63□□□□□ -0.39
COL6A3-206ENST00000409809 SELPLGQ14242 412 aa12.63□□□□□ -0.39
COL6A3-206ENST00000409809 PARP15Q460N3 678 aa12.63□□□□□ -0.39
COL6A3-206ENST00000409809 PSD4Q8NDX1 1056 aa12.63□□□□□ -0.39
COL6A3-206ENST00000409809 ADAMTS15Q8TE58 950 aa12.63□□□□□ -0.39
COL6A3-206ENST00000409809 FBXL8Q96CD0 374 aa12.63□□□□□ -0.39
COL6A3-206ENST00000409809 PELOQ9BRX2 385 aaKnown RBP12.63□□□□□ -0.39
COL6A3-206ENST00000409809 OSGEPL1Q9H4B0 414 aa12.63□□□□□ -0.39
COL6A3-206ENST00000409809 MROH8Q9H579 483 aa12.63□□□□□ -0.39
COL6A3-206ENST00000409809 BRD9Q9H8M2 597 aa12.63□□□□□ -0.39
COL6A3-206ENST00000409809 H2AFB2P0C5Z0 115 aa12.63□□□□□ -0.39
COL6A3-206ENST00000409809 RAPSNQ13702 412 aa12.63□□□□□ -0.39
COL6A3-206ENST00000409809 FAM174BQ3ZCQ3 159 aa12.63□□□□□ -0.39
COL6A3-206ENST00000409809 LRRC66Q68CR7 880 aa12.63□□□□□ -0.39
COL6A3-206ENST00000409809 RP1P56715 2156 aa12.63□□□□□ -0.39
COL6A3-206ENST00000409809 A0A1W2PP18 115 aa12.63□□□□□ -0.39
COL6A3-206ENST00000409809 MAOAP21397 527 aa12.63□□□□□ -0.39
COL6A3-206ENST00000409809 S100A10P60903 97 aa12.63□□□□□ -0.39
COL6A3-206ENST00000409809 MRPS10P82664 201 aaKnown RBP12.63□□□□□ -0.39
COL6A3-206ENST00000409809 LRIF1Q5T3J3 769 aa12.63□□□□□ -0.39
COL6A3-206ENST00000409809 PRAMEF13Q5VWM6 474 aa12.63□□□□□ -0.39
COL6A3-206ENST00000409809 HJURPQ8NCD3 748 aaPredicted RBP12.63□□□□□ -0.39
COL6A3-206ENST00000409809 NEUROD4Q9HD90 331 aa12.63□□□□□ -0.39
COL6A3-206ENST00000409809 CFAP97Q9P2B7 532 aa12.63□□□□□ -0.39
COL6A3-206ENST00000409809 SGCEO43556 437 aa12.63□□□□□ -0.39
COL6A3-206ENST00000409809 MPPE1Q53F39 396 aa12.63□□□□□ -0.39
COL6A3-206ENST00000409809 IL23RQ5VWK5 629 aa12.63□□□□□ -0.39
COL6A3-206ENST00000409809 GPR153Q6NV75 609 aa12.63□□□□□ -0.39
COL6A3-206ENST00000409809 SLC36A4Q6YBV0 504 aa12.63□□□□□ -0.39
COL6A3-206ENST00000409809 BEST3Q8N1M1 668 aa12.63□□□□□ -0.39
COL6A3-206ENST00000409809 VWA5B2Q8N398 1253 aa12.63□□□□□ -0.39
COL6A3-206ENST00000409809 OR10G2Q8NGC3 310 aa12.63□□□□□ -0.39
COL6A3-206ENST00000409809 TREX2Q9BQ50 279 aaPredicted RBP12.63□□□□□ -0.39
COL6A3-206ENST00000409809 MRPL45Q9BRJ2 306 aaKnown RBP12.63□□□□□ -0.39
COL6A3-206ENST00000409809 FMN2Q9NZ56 1722 aa12.63□□□□□ -0.39
COL6A3-206ENST00000409809 GPR75-ASB3A0A0A6YYF3 556 aa12.63□□□□□ -0.39
COL6A3-206ENST00000409809 A0A1W2PRQ8 180 aa12.63□□□□□ -0.39
COL6A3-206ENST00000409809 F8W036 122 aa12.63□□□□□ -0.39
COL6A3-206ENST00000409809 ARHGEF15O94989 841 aa12.63□□□□□ -0.39
COL6A3-206ENST00000409809 SLC16A8O95907 504 aa12.63□□□□□ -0.39
COL6A3-206ENST00000409809 CAP2P40123 477 aa12.63□□□□□ -0.39
COL6A3-206ENST00000409809 DPP6P42658 865 aa12.63□□□□□ -0.39
COL6A3-206ENST00000409809 BLOC1S1P78537 153 aa12.63□□□□□ -0.39
COL6A3-206ENST00000409809 ZNF169Q14929 603 aaPredicted RBP12.63□□□□□ -0.39
COL6A3-206ENST00000409809 RPF2Q9H7B2 306 aaKnown RBP12.63□□□□□ -0.39
COL6A3-206ENST00000409809 AGO4Q9HCK5 861 aaKnown RBP12.63□□□□□ -0.39
COL6A3-206ENST00000409809 PRMT8Q9NR22 394 aaPredicted RBP12.63□□□□□ -0.39
COL6A3-206ENST00000409809 CA5BQ9Y2D0 317 aa12.63□□□□□ -0.39
COL6A3-206ENST00000409809 ZNF510Q9Y2H8 683 aa12.63□□□□□ -0.39
COL6A3-206ENST00000409809 TSPAN15O95858 294 aa12.63□□□□□ -0.39
COL6A3-206ENST00000409809 CRISP3P54108 245 aa12.63□□□□□ -0.39
COL6A3-206ENST00000409809 TLE2Q04725 743 aa12.63□□□□□ -0.39
COL6A3-206ENST00000409809 CDK10Q15131 360 aa12.63□□□□□ -0.39
COL6A3-206ENST00000409809 C17orf64Q86WR6 236 aa12.63□□□□□ -0.39
COL6A3-206ENST00000409809 MIB1Q86YT6 1006 aa12.63□□□□□ -0.39
COL6A3-206ENST00000409809 SCUBE3Q8IX30 993 aa12.63□□□□□ -0.39
COL6A3-206ENST00000409809 OR10A6Q8NH74 314 aa12.63□□□□□ -0.39
COL6A3-206ENST00000409809 TAAR8Q969N4 342 aa12.63□□□□□ -0.39
COL6A3-206ENST00000409809 MFSD14AQ96MC6 490 aa12.63□□□□□ -0.39
COL6A3-206ENST00000409809 TNKS2Q9H2K2 1166 aa12.63□□□□□ -0.39
COL6A3-206ENST00000409809 NKX1-2Q9UD57 310 aaPredicted RBP12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms