RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 NPRL3Q12980 569 aa9.11□□□□□ -0.95
COL28A1-201ENST00000399429 DSC3Q14574 896 aa9.11□□□□□ -0.95
COL28A1-201ENST00000399429 TATDN3Q17R31 274 aa9.11□□□□□ -0.95
COL28A1-201ENST00000399429 UNC93AQ86WB7 457 aa9.11□□□□□ -0.95
COL28A1-201ENST00000399429 OR10G2Q8NGC3 310 aa9.11□□□□□ -0.95
COL28A1-201ENST00000399429 ANKRD49Q8WVL7 239 aa9.11□□□□□ -0.95
COL28A1-201ENST00000399429 ZFP3Q96NJ6 502 aa9.11□□□□□ -0.95
COL28A1-201ENST00000399429 KIFC1Q9BW19 673 aa9.11□□□□□ -0.95
COL28A1-201ENST00000399429 DUSP16Q9BY84 665 aa9.11□□□□□ -0.95
COL28A1-201ENST00000399429 SDR39U1Q9NRG7 319 aaPredicted RBP9.11□□□□□ -0.95
COL28A1-201ENST00000399429 PIGVQ9NUD9 493 aa9.11□□□□□ -0.95
COL28A1-201ENST00000399429 FAM105AQ9NUU6 356 aa9.11□□□□□ -0.95
COL28A1-201ENST00000399429 COL5A2P05997 1499 aaPredicted RBP9.11□□□□□ -0.95
COL28A1-201ENST00000399429 PDE4DIPQ5VU43 2346 aa9.11□□□□□ -0.95
COL28A1-201ENST00000399429 TTC24A2A3L6 582 aaPredicted RBP9.11□□□□□ -0.95
COL28A1-201ENST00000399429 CDC7O00311 574 aa9.11□□□□□ -0.95
COL28A1-201ENST00000399429 OPN1SWP03999 348 aa9.11□□□□□ -0.95
COL28A1-201ENST00000399429 TCF3P15923 654 aa9.11□□□□□ -0.95
COL28A1-201ENST00000399429 NUP62P37198 522 aaPredicted RBP9.11□□□□□ -0.95
COL28A1-201ENST00000399429 ETV3P41162 512 aa9.11□□□□□ -0.95
COL28A1-201ENST00000399429 PNPLA4P41247 253 aa9.11□□□□□ -0.95
COL28A1-201ENST00000399429 KIR3DL1P43629 444 aa9.11□□□□□ -0.95
COL28A1-201ENST00000399429 JAG1P78504 1218 aa9.11□□□□□ -0.95
COL28A1-201ENST00000399429 CTF1Q16619 201 aa9.11□□□□□ -0.95
COL28A1-201ENST00000399429 CTU2Q2VPK5 515 aaKnown RBP9.11□□□□□ -0.95
COL28A1-201ENST00000399429 RUNDC3AQ59EK9 446 aa9.11□□□□□ -0.95
COL28A1-201ENST00000399429 IZUMO1Q8IYV9 350 aa9.11□□□□□ -0.95
COL28A1-201ENST00000399429 PIAS4Q8N2W9 510 aaPredicted RBP9.11□□□□□ -0.95
COL28A1-201ENST00000399429 SRFBP1Q8NEF9 429 aaKnown RBP9.11□□□□□ -0.95
COL28A1-201ENST00000399429 ZNF671Q8TAW3 534 aa9.11□□□□□ -0.95
COL28A1-201ENST00000399429 SMG7Q92540 1137 aaKnown RBP9.11□□□□□ -0.95
COL28A1-201ENST00000399429 CRELD1Q96HD1 420 aa9.11□□□□□ -0.95
COL28A1-201ENST00000399429 TCF25Q9BQ70 676 aa9.11□□□□□ -0.95
COL28A1-201ENST00000399429 TRIM62Q9BVG3 475 aa9.11□□□□□ -0.95
COL28A1-201ENST00000399429 TTLL2Q9BWV7 592 aa9.11□□□□□ -0.95
COL28A1-201ENST00000399429 OSBPL2Q9H1P3 480 aa9.11□□□□□ -0.95
COL28A1-201ENST00000399429 RNF167Q9H6Y7 350 aa9.11□□□□□ -0.95
COL28A1-201ENST00000399429 HCN3Q9P1Z3 774 aa9.11□□□□□ -0.95
COL28A1-201ENST00000399429 RAB23Q9ULC3 237 aa9.11□□□□□ -0.95
COL28A1-201ENST00000399429 MYO10Q9HD67 2058 aa9.1□□□□□ -0.95
COL28A1-201ENST00000399429 MID1O15344 667 aa9.1□□□□□ -0.95
COL28A1-201ENST00000399429 ECI2O75521 394 aa9.1□□□□□ -0.95
COL28A1-201ENST00000399429 CAPNS1P04632 268 aa9.1□□□□□ -0.95
COL28A1-201ENST00000399429 LMO2P25791 158 aa9.1□□□□□ -0.95
COL28A1-201ENST00000399429 STOMP27105 288 aa9.1□□□□□ -0.95
COL28A1-201ENST00000399429 GPR68Q15743 365 aa9.1□□□□□ -0.95
COL28A1-201ENST00000399429 FXNQ16595 210 aa9.1□□□□□ -0.95
COL28A1-201ENST00000399429 ZNF789Q5FWF6 425 aa9.1□□□□□ -0.95
COL28A1-201ENST00000399429 C15orf52Q6ZUT6 534 aaKnown RBP9.1□□□□□ -0.95
COL28A1-201ENST00000399429 HS6ST3Q8IZP7 471 aa9.1□□□□□ -0.95
COL28A1-201ENST00000399429 COQ8AQ8NI60 647 aa9.1□□□□□ -0.95
COL28A1-201ENST00000399429 TRPM4Q8TD43 1214 aa9.1□□□□□ -0.95
COL28A1-201ENST00000399429 DNAJA4Q8WW22 397 aaPredicted RBP9.1□□□□□ -0.95
COL28A1-201ENST00000399429 NELL1Q92832 810 aa9.1□□□□□ -0.95
COL28A1-201ENST00000399429 UHRF1Q96T88 793 aaPredicted RBP9.1□□□□□ -0.95
COL28A1-201ENST00000399429 MLPHQ9BV36 600 aaPredicted RBP9.1□□□□□ -0.95
COL28A1-201ENST00000399429 CINPQ9BW66 212 aaPredicted RBP9.1□□□□□ -0.95
COL28A1-201ENST00000399429 H3BM21 787 aa9.1□□□□□ -0.95
COL28A1-201ENST00000399429 MSCO60682 206 aa9.1□□□□□ -0.95
COL28A1-201ENST00000399429 EEDO75530 441 aaKnown RBP9.1□□□□□ -0.95
COL28A1-201ENST00000399429 DSC2Q02487 901 aa9.1□□□□□ -0.95
COL28A1-201ENST00000399429 ACSM2AQ08AH3 577 aa9.1□□□□□ -0.95
COL28A1-201ENST00000399429 CDC20Q12834 499 aa9.1□□□□□ -0.95
COL28A1-201ENST00000399429 SPATS1Q496A3 300 aa9.1□□□□□ -0.95
COL28A1-201ENST00000399429 ZNF691Q5VV52 312 aa9.1□□□□□ -0.95
COL28A1-201ENST00000399429 LIPKQ5VXJ0 399 aa9.1□□□□□ -0.95
COL28A1-201ENST00000399429 SLX4IPQ5VYV7 408 aa9.1□□□□□ -0.95
COL28A1-201ENST00000399429 ACSM2BQ68CK6 577 aa9.1□□□□□ -0.95
COL28A1-201ENST00000399429 XAF1Q6GPH4 301 aa9.1□□□□□ -0.95
COL28A1-201ENST00000399429 METTL7BQ6UX53 244 aa9.1□□□□□ -0.95
COL28A1-201ENST00000399429 CFAP77Q6ZQR2 320 aa9.1□□□□□ -0.95
COL28A1-201ENST00000399429 USP45Q70EL2 814 aa9.1□□□□□ -0.95
COL28A1-201ENST00000399429 IKBIPQ70UQ0 350 aa9.1□□□□□ -0.95
COL28A1-201ENST00000399429 THEM5Q8N1Q8 247 aa9.1□□□□□ -0.95
COL28A1-201ENST00000399429 DYNC2LI1Q8TCX1 351 aa9.1□□□□□ -0.95
COL28A1-201ENST00000399429 CLEC4DQ8WXI8 215 aa9.1□□□□□ -0.95
COL28A1-201ENST00000399429 TM9SF3Q9HD45 589 aa9.1□□□□□ -0.95
COL28A1-201ENST00000399429 TMEM138Q9NPI0 162 aa9.1□□□□□ -0.95
COL28A1-201ENST00000399429 SIX4Q9UIU6 781 aa9.1□□□□□ -0.95
COL28A1-201ENST00000399429 CLCA2Q9UQC9 943 aa9.1□□□□□ -0.95
COL28A1-201ENST00000399429 SLC28A1O00337 649 aa9.1□□□□□ -0.95
COL28A1-201ENST00000399429 FPGTO14772 594 aa9.1□□□□□ -0.95
COL28A1-201ENST00000399429 CCNB2O95067 398 aa9.1□□□□□ -0.95
COL28A1-201ENST00000399429 STAU1O95793 577 aaKnown RBP9.1□□□□□ -0.95
COL28A1-201ENST00000399429 PROS1P07225 676 aa9.1□□□□□ -0.95
COL28A1-201ENST00000399429 PFKLP17858 780 aa9.1□□□□□ -0.95
COL28A1-201ENST00000399429 GGT1P19440 569 aa9.1□□□□□ -0.95
COL28A1-201ENST00000399429 SSTR2P30874 369 aa9.1□□□□□ -0.95
COL28A1-201ENST00000399429 AP2S1P53680 142 aaPredicted RBP9.1□□□□□ -0.95
COL28A1-201ENST00000399429 CHRNEQ04844 493 aa9.1□□□□□ -0.95
COL28A1-201ENST00000399429 GANABQ14697 944 aaKnown RBP9.1□□□□□ -0.95
COL28A1-201ENST00000399429 HSD17B12Q53GQ0 312 aa9.1□□□□□ -0.95
COL28A1-201ENST00000399429 WSCD1Q658N2 575 aa9.1□□□□□ -0.95
COL28A1-201ENST00000399429 NOTUMQ6P988 496 aa9.1□□□□□ -0.95
COL28A1-201ENST00000399429 TSPYL5Q86VY4 417 aaPredicted RBP9.1□□□□□ -0.95
COL28A1-201ENST00000399429 SPATA2LQ8IUW3 424 aaPredicted RBP9.1□□□□□ -0.95
COL28A1-201ENST00000399429 UBQLNLQ8IYU4 475 aa9.1□□□□□ -0.95
COL28A1-201ENST00000399429 UBE2FQ969M7 185 aa9.1□□□□□ -0.95
COL28A1-201ENST00000399429 KCTD7Q96MP8 289 aa9.1□□□□□ -0.95
COL28A1-201ENST00000399429 CDADC1Q9BWV3 514 aa9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms