RNA–Protein interactions for RNA: ENST00000394253.7

USP49-203, Transcript of ubiquitin specific peptidase 49, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP49, Length 9,034 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-203ENST00000394253 GPATCH2LQ9NWQ4 482 aa13.16□□□□□ -0.3
USP49-203ENST00000394253 AHCTF1Q8WYP5 2266 aa13.16□□□□□ -0.3
USP49-203ENST00000394253 ZNF254O75437 659 aa13.16□□□□□ -0.3
USP49-203ENST00000394253 ATP5C1P36542 298 aaKnown RBP13.16□□□□□ -0.3
USP49-203ENST00000394253 SCARB2Q14108 478 aa13.16□□□□□ -0.3
USP49-203ENST00000394253 FAM122CQ6P4D5 195 aa13.16□□□□□ -0.3
USP49-203ENST00000394253 GK5Q6ZS86 529 aa13.16□□□□□ -0.3
USP49-203ENST00000394253 SNX29P2Q8IUI4 249 aa13.16□□□□□ -0.3
USP49-203ENST00000394253 ARL6Q9H0F7 186 aa13.16□□□□□ -0.3
USP49-203ENST00000394253 MMP27Q9H306 513 aa13.16□□□□□ -0.3
USP49-203ENST00000394253 LRRC42Q9Y546 428 aa13.16□□□□□ -0.3
USP49-203ENST00000394253 PLGP00747 810 aaPredicted RBP13.16□□□□□ -0.3
USP49-203ENST00000394253 EDNRAP25101 427 aa13.16□□□□□ -0.3
USP49-203ENST00000394253 C2orf80Q0P641 193 aa13.16□□□□□ -0.3
USP49-203ENST00000394253 ELMO3Q96BJ8 720 aa13.16□□□□□ -0.3
USP49-203ENST00000394253 RTFDC1Q9BY42 306 aaPredicted RBP13.16□□□□□ -0.3
USP49-203ENST00000394253 GAKO14976 1311 aa13.16□□□□□ -0.3
USP49-203ENST00000394253 ATP10BO94823 1461 aa13.15□□□□□ -0.3
USP49-203ENST00000394253 KIAA0556O60303 1618 aa13.15□□□□□ -0.3
USP49-203ENST00000394253 SCGB1D1O95968 90 aa13.15□□□□□ -0.3
USP49-203ENST00000394253 PGAP1Q75T13 922 aa13.15□□□□□ -0.3
USP49-203ENST00000394253 MTFR1LQ9H019 292 aa13.15□□□□□ -0.3
USP49-203ENST00000394253 KBTBD4Q9NVX7 518 aa13.15□□□□□ -0.3
USP49-203ENST00000394253 ICKQ9UPZ9 632 aa13.15□□□□□ -0.3
USP49-203ENST00000394253 ELOA3DA6NLF2 546 aaPredicted RBP13.15□□□□□ -0.3
USP49-203ENST00000394253 SRPRAP08240 638 aaKnown RBP13.15□□□□□ -0.3
USP49-203ENST00000394253 AHCYP23526 432 aa13.15□□□□□ -0.3
USP49-203ENST00000394253 SLC18A2Q05940 514 aa13.15□□□□□ -0.3
USP49-203ENST00000394253 ELOA3BQ3SY89 546 aa13.15□□□□□ -0.3
USP49-203ENST00000394253 GPR153Q6NV75 609 aa13.15□□□□□ -0.3
USP49-203ENST00000394253 SPATA6LQ8N4H0 392 aa13.15□□□□□ -0.3
USP49-203ENST00000394253 ELOA3Q8NG57 546 aa13.15□□□□□ -0.3
USP49-203ENST00000394253 OR5K1Q8NHB7 308 aa13.15□□□□□ -0.3
USP49-203ENST00000394253 GAL3ST1Q99999 423 aa13.15□□□□□ -0.3
USP49-203ENST00000394253 CCDC32Q9BV29 185 aa13.15□□□□□ -0.3
USP49-203ENST00000394253 PNPLA6Q8IY17 1366 aa13.15□□□□□ -0.3
USP49-203ENST00000394253 TBC1D3BA6NDS4 549 aa13.15□□□□□ -0.3
USP49-203ENST00000394253 ADAM10O14672 748 aa13.15□□□□□ -0.3
USP49-203ENST00000394253 ZNF821O75541 412 aaPredicted RBP13.15□□□□□ -0.3
USP49-203ENST00000394253 SNAPINO95295 136 aa13.15□□□□□ -0.3
USP49-203ENST00000394253 SUPT20HL2P0C7V6 817 aa13.15□□□□□ -0.3
USP49-203ENST00000394253 CERS1P27544 350 aa13.15□□□□□ -0.3
USP49-203ENST00000394253 GRIK2Q13002 908 aa13.15□□□□□ -0.3
USP49-203ENST00000394253 CHIT1Q13231 466 aa13.15□□□□□ -0.3
USP49-203ENST00000394253 DPY19L3Q6ZPD9 716 aa13.15□□□□□ -0.3
USP49-203ENST00000394253 SH3RF1Q7Z6J0 888 aa13.15□□□□□ -0.3
USP49-203ENST00000394253 TWIST2Q8WVJ9 160 aa13.15□□□□□ -0.3
USP49-203ENST00000394253 TRAPPC12Q8WVT3 735 aa13.15□□□□□ -0.3
USP49-203ENST00000394253 VPS25Q9BRG1 176 aa13.15□□□□□ -0.3
USP49-203ENST00000394253 FN3KQ9H479 309 aa13.15□□□□□ -0.3
USP49-203ENST00000394253 PIGRP01833 764 aa13.15□□□□□ -0.3
USP49-203ENST00000394253 NRIP1P48552 1158 aa13.15□□□□□ -0.3
USP49-203ENST00000394253 NXPE1Q8N323 547 aa13.15□□□□□ -0.3
USP49-203ENST00000394253 LNX2Q8N448 690 aa13.15□□□□□ -0.3
USP49-203ENST00000394253 SCRN2Q96FV2 425 aa13.15□□□□□ -0.3
USP49-203ENST00000394253 YIPF4Q9BSR8 244 aa13.15□□□□□ -0.3
USP49-203ENST00000394253 LRRC19Q9H756 370 aa13.15□□□□□ -0.3
USP49-203ENST00000394253 ADGRL2O95490 1459 aa13.15□□□□□ -0.3
USP49-203ENST00000394253 PZPP20742 1482 aa13.15□□□□□ -0.3
USP49-203ENST00000394253 HOXD8P13378 290 aaPredicted RBP13.15□□□□□ -0.3
USP49-203ENST00000394253 PRKCAP17252 672 aa13.15□□□□□ -0.3
USP49-203ENST00000394253 MAGEB1P43366 347 aa13.15□□□□□ -0.3
USP49-203ENST00000394253 RGL4Q8IZJ4 473 aa13.15□□□□□ -0.3
USP49-203ENST00000394253 SMG8Q8ND04 991 aaKnown RBP13.15□□□□□ -0.3
USP49-203ENST00000394253 AURKBQ96GD4 344 aaPredicted RBP13.15□□□□□ -0.3
USP49-203ENST00000394253 MECRQ9BV79 373 aa13.15□□□□□ -0.3
USP49-203ENST00000394253 TRPM1Q7Z4N2 1603 aa13.15□□□□□ -0.3
USP49-203ENST00000394253 ERCC1P07992 297 aaPredicted RBP13.15□□□□□ -0.3
USP49-203ENST00000394253 TMEM69Q5SWH9 247 aa13.15□□□□□ -0.3
USP49-203ENST00000394253 IQCF1Q8N6M8 205 aa13.15□□□□□ -0.3
USP49-203ENST00000394253 ZNF419Q96HQ0 510 aaPredicted RBP13.15□□□□□ -0.3
USP49-203ENST00000394253 C7orf26Q96N11 449 aa13.15□□□□□ -0.3
USP49-203ENST00000394253 LRRC3Q9BY71 257 aa13.15□□□□□ -0.3
USP49-203ENST00000394253 SLC6A16Q9GZN6 736 aa13.15□□□□□ -0.3
USP49-203ENST00000394253 PRMT8Q9NR22 394 aaPredicted RBP13.15□□□□□ -0.3
USP49-203ENST00000394253 CHRNB2P17787 502 aa13.15□□□□□ -0.31
USP49-203ENST00000394253 ZACNQ401N2 412 aa13.15□□□□□ -0.31
USP49-203ENST00000394253 MTMR8Q96EF0 704 aa13.15□□□□□ -0.31
USP49-203ENST00000394253 MKKSQ9NPJ1 570 aaPredicted RBP13.15□□□□□ -0.31
USP49-203ENST00000394253 DNAJB9Q9UBS3 223 aa13.15□□□□□ -0.31
USP49-203ENST00000394253 MFSD5Q6N075 450 aa13.14□□□□□ -0.31
USP49-203ENST00000394253 ART4Q93070 314 aa13.14□□□□□ -0.31
USP49-203ENST00000394253 ZBED3Q96IU2 234 aaPredicted RBP13.14□□□□□ -0.31
USP49-203ENST00000394253 STK16O75716 305 aa13.14□□□□□ -0.31
USP49-203ENST00000394253 SLC35G6P0C7Q6 338 aa13.14□□□□□ -0.31
USP49-203ENST00000394253 CTPS1P17812 591 aa13.14□□□□□ -0.31
USP49-203ENST00000394253 PRKACBP22694 351 aa13.14□□□□□ -0.31
USP49-203ENST00000394253 ZNF423Q2M1K9 1284 aa13.14□□□□□ -0.31
USP49-203ENST00000394253 SLA2Q9H6Q3 261 aa13.14□□□□□ -0.31
USP49-203ENST00000394253 TAS2R8Q9NYW2 309 aa13.14□□□□□ -0.31
USP49-203ENST00000394253 SLAIN2Q9P270 581 aa13.14□□□□□ -0.31
USP49-203ENST00000394253 LAMP5Q9UJQ1 280 aa13.14□□□□□ -0.31
USP49-203ENST00000394253 USP20Q9Y2K6 914 aa13.14□□□□□ -0.31
USP49-203ENST00000394253 TESMINQ9Y4I5 508 aa13.14□□□□□ -0.31
USP49-203ENST00000394253 ABCA9Q8IUA7 1624 aa13.14□□□□□ -0.31
USP49-203ENST00000394253 CNTNAP5Q8WYK1 1306 aa13.14□□□□□ -0.31
USP49-203ENST00000394253 FAM234BA2RU67 622 aa13.14□□□□□ -0.31
USP49-203ENST00000394253 HMX3A6NHT5 357 aa13.14□□□□□ -0.31
USP49-203ENST00000394253 H0YGN5 161 aa13.14□□□□□ -0.31
USP49-203ENST00000394253 CHRNB1P11230 501 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms