RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 ZNF155Q12901 538 aaPredicted RBP11.61□□□□□ -0.55
SYNPO-202ENST00000394243 AIMP2Q13155 320 aaKnown RBP11.61□□□□□ -0.55
SYNPO-202ENST00000394243 CCDC58Q4VC31 144 aa11.61□□□□□ -0.55
SYNPO-202ENST00000394243 CPNE9Q8IYJ1 553 aa11.61□□□□□ -0.55
SYNPO-202ENST00000394243 ZNF676Q8N7Q3 588 aa11.61□□□□□ -0.55
SYNPO-202ENST00000394243 TP63Q9H3D4 680 aaPredicted RBP11.61□□□□□ -0.55
SYNPO-202ENST00000394243 TM9SF3Q9HD45 589 aa11.61□□□□□ -0.55
SYNPO-202ENST00000394243 PCDHGB7Q9Y5F8 929 aa11.61□□□□□ -0.55
SYNPO-202ENST00000394243 A0A1B0GVC2 190 aa11.61□□□□□ -0.55
SYNPO-202ENST00000394243 CXorf49A8MYA2 514 aaPredicted RBP11.61□□□□□ -0.55
SYNPO-202ENST00000394243 SLC9A3R1O14745 358 aaPredicted RBP11.61□□□□□ -0.55
SYNPO-202ENST00000394243 HTR2AP28223 471 aa11.61□□□□□ -0.55
SYNPO-202ENST00000394243 SLC10A7Q0GE19 358 aa11.61□□□□□ -0.55
SYNPO-202ENST00000394243 SH3PXD2AQ5TCZ1 1133 aa11.61□□□□□ -0.55
SYNPO-202ENST00000394243 IRAK1BP1Q5VVH5 260 aa11.61□□□□□ -0.55
SYNPO-202ENST00000394243 VTCN1Q7Z7D3 282 aa11.61□□□□□ -0.55
SYNPO-202ENST00000394243 MFSD8Q8NHS3 518 aa11.61□□□□□ -0.55
SYNPO-202ENST00000394243 C15orf40Q8WUR7 153 aa11.61□□□□□ -0.55
SYNPO-202ENST00000394243 SETBP1Q9Y6X0 1596 aa11.61□□□□□ -0.55
SYNPO-202ENST00000394243 GIMAP1-GIMAP5A0A087WTJ2 511 aa11.6□□□□□ -0.55
SYNPO-202ENST00000394243 FUOMA2VDF0 154 aa11.6□□□□□ -0.55
SYNPO-202ENST00000394243 STMND1H3BQB6 276 aa11.6□□□□□ -0.55
SYNPO-202ENST00000394243 FFAR2O15552 330 aa11.6□□□□□ -0.55
SYNPO-202ENST00000394243 CACNG1Q06432 222 aa11.6□□□□□ -0.55
SYNPO-202ENST00000394243 DNAJB7Q7Z6W7 309 aaPredicted RBP11.6□□□□□ -0.55
SYNPO-202ENST00000394243 CGREF1Q99674 301 aa11.6□□□□□ -0.55
SYNPO-202ENST00000394243 DUSP26Q9BV47 211 aa11.6□□□□□ -0.55
SYNPO-202ENST00000394243 TMEM185BQ9H7F4 350 aa11.6□□□□□ -0.55
SYNPO-202ENST00000394243 NT5C1B-RDH14C9J2C7 533 aa11.6□□□□□ -0.55
SYNPO-202ENST00000394243 MSI1O43347 362 aaKnown RBP11.6□□□□□ -0.55
SYNPO-202ENST00000394243 TMEM63AO94886 807 aa11.6□□□□□ -0.55
SYNPO-202ENST00000394243 SLC1A2P43004 574 aa11.6□□□□□ -0.55
SYNPO-202ENST00000394243 AVPR1BP47901 424 aa11.6□□□□□ -0.55
SYNPO-202ENST00000394243 SLC18A1P54219 525 aa11.6□□□□□ -0.55
SYNPO-202ENST00000394243 HERVK_113P63132 956 aa11.6□□□□□ -0.55
SYNPO-202ENST00000394243 SF1Q15637 639 aaKnown RBP11.6□□□□□ -0.55
SYNPO-202ENST00000394243 EPGNQ6UW88 154 aa11.6□□□□□ -0.55
SYNPO-202ENST00000394243 PYROXD2Q8N2H3 581 aa11.6□□□□□ -0.55
SYNPO-202ENST00000394243 DNAJB8Q8NHS0 232 aa11.6□□□□□ -0.55
SYNPO-202ENST00000394243 TMEM80Q96HE8 168 aa11.6□□□□□ -0.55
SYNPO-202ENST00000394243 PYURFQ96I23 114 aa11.6□□□□□ -0.55
SYNPO-202ENST00000394243 ASPNQ9BXN1 380 aa11.6□□□□□ -0.55
SYNPO-202ENST00000394243 ERVK-6Q9BXR3 956 aa11.6□□□□□ -0.55
SYNPO-202ENST00000394243 NMUR1Q9HB89 426 aa11.6□□□□□ -0.55
SYNPO-202ENST00000394243 TCRBV7S3A2A0A539 114 aa11.6□□□□□ -0.55
SYNPO-202ENST00000394243 HTR3EA5X5Y0 456 aa11.6□□□□□ -0.55
SYNPO-202ENST00000394243 SLC15A5A6NIM6 579 aa11.6□□□□□ -0.55
SYNPO-202ENST00000394243 ELOA3DA6NLF2 546 aaPredicted RBP11.6□□□□□ -0.55
SYNPO-202ENST00000394243 ELOA3BQ3SY89 546 aa11.6□□□□□ -0.55
SYNPO-202ENST00000394243 C4orf32Q8N8J7 132 aa11.6□□□□□ -0.55
SYNPO-202ENST00000394243 ELOA3Q8NG57 546 aa11.6□□□□□ -0.55
SYNPO-202ENST00000394243 SNIP1Q8TAD8 396 aaKnown RBP11.6□□□□□ -0.55
SYNPO-202ENST00000394243 MUS81Q96NY9 551 aa11.6□□□□□ -0.55
SYNPO-202ENST00000394243 ERVK13-1Q9NX77 482 aa11.6□□□□□ -0.55
SYNPO-202ENST00000394243 ADAMTS6Q9UKP5 1117 aa11.6□□□□□ -0.55
SYNPO-202ENST00000394243 J3QLW9 94 aa11.6□□□□□ -0.55
SYNPO-202ENST00000394243 OAZ2O95190 189 aa11.6□□□□□ -0.55
SYNPO-202ENST00000394243 FARS2O95363 451 aaKnown RBP11.6□□□□□ -0.55
SYNPO-202ENST00000394243 HLA-DPB1P04440 258 aa11.6□□□□□ -0.55
SYNPO-202ENST00000394243 RPLP2P05387 115 aaKnown RBP11.6□□□□□ -0.55
SYNPO-202ENST00000394243 RPS2P15880 293 aaKnown RBP11.6□□□□□ -0.55
SYNPO-202ENST00000394243 ZNF19P17023 458 aa11.6□□□□□ -0.55
SYNPO-202ENST00000394243 ENGP17813 658 aa11.6□□□□□ -0.55
SYNPO-202ENST00000394243 DGKQP52824 942 aa11.6□□□□□ -0.55
SYNPO-202ENST00000394243 AP1S1P61966 158 aa11.6□□□□□ -0.55
SYNPO-202ENST00000394243 KRBOX4Q5JUW0 171 aa11.6□□□□□ -0.55
SYNPO-202ENST00000394243 NOL9Q5SY16 702 aaKnown RBP11.6□□□□□ -0.55
SYNPO-202ENST00000394243 TSTD2Q5T7W7 516 aa11.6□□□□□ -0.55
SYNPO-202ENST00000394243 DRICH1Q6PGQ1 229 aaPredicted RBP11.6□□□□□ -0.55
SYNPO-202ENST00000394243 SLC2A7Q6PXP3 512 aa11.6□□□□□ -0.55
SYNPO-202ENST00000394243 METTL25Q8N6Q8 603 aa11.6□□□□□ -0.55
SYNPO-202ENST00000394243 FAM53CQ9NYF3 392 aa11.6□□□□□ -0.55
SYNPO-202ENST00000394243 ABCD2Q9UBJ2 740 aa11.6□□□□□ -0.55
SYNPO-202ENST00000394243 CLIC1O00299 241 aa11.6□□□□□ -0.55
SYNPO-202ENST00000394243 NDST3O95803 873 aa11.6□□□□□ -0.55
SYNPO-202ENST00000394243 OPN1SWP03999 348 aa11.6□□□□□ -0.55
SYNPO-202ENST00000394243 MLLT6P55198 1093 aaPredicted RBP11.6□□□□□ -0.55
SYNPO-202ENST00000394243 PRR5P85299 388 aa11.6□□□□□ -0.55
SYNPO-202ENST00000394243 LAPTM4AQ15012 233 aa11.6□□□□□ -0.55
SYNPO-202ENST00000394243 NAT8LQ8N9F0 302 aa11.6□□□□□ -0.55
SYNPO-202ENST00000394243 IMP3Q9NV31 184 aaKnown RBP11.6□□□□□ -0.55
SYNPO-202ENST00000394243 THG1LQ9NWX6 298 aaKnown RBP11.6□□□□□ -0.55
SYNPO-202ENST00000394243 RAI2Q9Y5P3 530 aa11.6□□□□□ -0.55
SYNPO-202ENST00000394243 NKRFO15226 690 aaKnown RBP eCLIP11.59□□□□□ -0.55
SYNPO-202ENST00000394243 MATN4O95460 622 aa11.59□□□□□ -0.55
SYNPO-202ENST00000394243 MAP2K3P46734 347 aa11.59□□□□□ -0.55
SYNPO-202ENST00000394243 XKR4Q5GH76 650 aa11.59□□□□□ -0.55
SYNPO-202ENST00000394243 MARVELD2Q8N4S9 558 aa11.59□□□□□ -0.55
SYNPO-202ENST00000394243 SLC35G5Q96KT7 338 aa11.59□□□□□ -0.55
SYNPO-202ENST00000394243 C7orf34Q96L11 122 aa11.59□□□□□ -0.55
SYNPO-202ENST00000394243 TMEM74Q96NL1 305 aa11.59□□□□□ -0.55
SYNPO-202ENST00000394243 SCGB3A2Q96PL1 93 aa11.59□□□□□ -0.55
SYNPO-202ENST00000394243 PKP4Q99569 1192 aa11.59□□□□□ -0.55
SYNPO-202ENST00000394243 HTATIP2Q9BUP3 242 aa11.59□□□□□ -0.55
SYNPO-202ENST00000394243 HSD3B7Q9H2F3 369 aa11.59□□□□□ -0.55
SYNPO-202ENST00000394243 MYH8P13535 1937 aa11.59□□□□□ -0.55
SYNPO-202ENST00000394243 TVP23AA6NH52 213 aa11.59□□□□□ -0.55
SYNPO-202ENST00000394243 ZNF823P16415 610 aa11.59□□□□□ -0.55
SYNPO-202ENST00000394243 CHRNB2P17787 502 aa11.59□□□□□ -0.55
SYNPO-202ENST00000394243 IMPDH1P20839 514 aa11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms