RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 MATN4O95460 622 aa11.19□□□□□ -0.62
PTPRF-203ENST00000372407 SLC6A4P31645 630 aa11.19□□□□□ -0.62
PTPRF-203ENST00000372407 DGKQP52824 942 aa11.19□□□□□ -0.62
PTPRF-203ENST00000372407 CDH15P55291 814 aa11.19□□□□□ -0.62
PTPRF-203ENST00000372407 GJA9P57773 515 aa11.19□□□□□ -0.62
PTPRF-203ENST00000372407 C1QTNF8P60827 252 aa11.19□□□□□ -0.62
PTPRF-203ENST00000372407 CRB2Q5IJ48 1285 aa11.19□□□□□ -0.62
PTPRF-203ENST00000372407 FRG2Q64ET8 278 aa11.19□□□□□ -0.62
PTPRF-203ENST00000372407 OR2T5Q6IEZ7 315 aa11.19□□□□□ -0.62
PTPRF-203ENST00000372407 OR2T29Q8NH02 315 aa11.19□□□□□ -0.62
PTPRF-203ENST00000372407 EFHD2Q96C19 240 aaPredicted RBP11.19□□□□□ -0.62
PTPRF-203ENST00000372407 FRG2BQ96QU4 278 aa11.19□□□□□ -0.62
PTPRF-203ENST00000372407 GFM1Q96RP9 751 aaKnown RBP11.19□□□□□ -0.62
PTPRF-203ENST00000372407 PKP2Q99959 881 aa11.19□□□□□ -0.62
PTPRF-203ENST00000372407 MOV10Q9HCE1 1003 aaKnown RBP11.19□□□□□ -0.62
PTPRF-203ENST00000372407 ZDHHC3Q9NYG2 299 aa11.19□□□□□ -0.62
PTPRF-203ENST00000372407 PTBP2Q9UKA9 531 aaKnown RBP11.19□□□□□ -0.62
PTPRF-203ENST00000372407 MAP1BP46821 2468 aaKnown RBP11.19□□□□□ -0.62
PTPRF-203ENST00000372407 PIK3CBP42338 1070 aa11.18□□□□□ -0.62
PTPRF-203ENST00000372407 ARHGAP1Q07960 439 aa11.18□□□□□ -0.62
PTPRF-203ENST00000372407 GALNT2Q10471 571 aa11.18□□□□□ -0.62
PTPRF-203ENST00000372407 POMZP3Q6PJE2 187 aa11.18□□□□□ -0.62
PTPRF-203ENST00000372407 NEK7Q8TDX7 302 aa11.18□□□□□ -0.62
PTPRF-203ENST00000372407 STON2Q8WXE9 905 aa11.18□□□□□ -0.62
PTPRF-203ENST00000372407 TMBIM1Q969X1 311 aa11.18□□□□□ -0.62
PTPRF-203ENST00000372407 SUV39H2Q9H5I1 410 aa11.18□□□□□ -0.62
PTPRF-203ENST00000372407 OSER1Q9NX31 292 aa11.18□□□□□ -0.62
PTPRF-203ENST00000372407 KAT6AQ92794 2004 aa11.18□□□□□ -0.62
PTPRF-203ENST00000372407 BCAS2O75934 225 aaPredicted RBP11.18□□□□□ -0.62
PTPRF-203ENST00000372407 CD2P06729 351 aa11.18□□□□□ -0.62
PTPRF-203ENST00000372407 PTPN2P17706 415 aa11.18□□□□□ -0.62
PTPRF-203ENST00000372407 FMO3P31513 532 aa11.18□□□□□ -0.62
PTPRF-203ENST00000372407 DGKGP49619 791 aa11.18□□□□□ -0.62
PTPRF-203ENST00000372407 TCEAL1Q15170 157 aa11.18□□□□□ -0.62
PTPRF-203ENST00000372407 SIRPB2Q5JXA9 342 aa11.18□□□□□ -0.62
PTPRF-203ENST00000372407 ADNP2Q6IQ32 1131 aa11.18□□□□□ -0.62
PTPRF-203ENST00000372407 PRSS55Q6UWB4 352 aaPredicted RBP11.18□□□□□ -0.62
PTPRF-203ENST00000372407 DNAJB7Q7Z6W7 309 aaPredicted RBP11.18□□□□□ -0.62
PTPRF-203ENST00000372407 LGI4Q8N135 537 aa11.18□□□□□ -0.62
PTPRF-203ENST00000372407 KBTBD7Q8WVZ9 684 aa11.18□□□□□ -0.62
PTPRF-203ENST00000372407 NPY6RQ99463 290 aa11.18□□□□□ -0.62
PTPRF-203ENST00000372407 THUMPD1Q9NXG2 353 aaKnown RBP11.18□□□□□ -0.62
PTPRF-203ENST00000372407 SPATA7Q9P0W8 599 aa11.18□□□□□ -0.62
PTPRF-203ENST00000372407 SIRPGQ9P1W8 387 aa11.18□□□□□ -0.62
PTPRF-203ENST00000372407 PRKAB1Q9Y478 270 aa11.18□□□□□ -0.62
PTPRF-203ENST00000372407 TELO2Q9Y4R8 837 aa11.18□□□□□ -0.62
PTPRF-203ENST00000372407 DUXAA6NLW8 204 aa11.18□□□□□ -0.62
PTPRF-203ENST00000372407 HMGN1P05114 100 aa11.18□□□□□ -0.62
PTPRF-203ENST00000372407 C8AP07357 584 aa11.18□□□□□ -0.62
PTPRF-203ENST00000372407 MINDY4Q4G0A6 757 aa11.18□□□□□ -0.62
PTPRF-203ENST00000372407 RBM20Q5T481 1227 aaKnown RBP11.18□□□□□ -0.62
PTPRF-203ENST00000372407 PGBD2Q6P3X8 592 aa11.18□□□□□ -0.62
PTPRF-203ENST00000372407 HFE2Q6ZVN8 426 aa11.18□□□□□ -0.62
PTPRF-203ENST00000372407 AMZ2Q86W34 360 aa11.18□□□□□ -0.62
PTPRF-203ENST00000372407 SIX5Q8N196 739 aa11.18□□□□□ -0.62
PTPRF-203ENST00000372407 NATD1Q8N6N6 113 aa11.18□□□□□ -0.62
PTPRF-203ENST00000372407 OR10H4Q8NGA5 316 aa11.18□□□□□ -0.62
PTPRF-203ENST00000372407 OR9I1Q8NGQ6 314 aa11.18□□□□□ -0.62
PTPRF-203ENST00000372407 TSEN15Q8WW01 171 aaKnown RBP11.18□□□□□ -0.62
PTPRF-203ENST00000372407 TP53INP1Q96A56 240 aa11.18□□□□□ -0.62
PTPRF-203ENST00000372407 LMLNQ96KR4 655 aa11.18□□□□□ -0.62
PTPRF-203ENST00000372407 COL21A1Q96P44 957 aa11.18□□□□□ -0.62
PTPRF-203ENST00000372407 RNF39Q9H2S5 420 aa11.18□□□□□ -0.62
PTPRF-203ENST00000372407 SMURF2Q9HAU4 748 aa11.18□□□□□ -0.62
PTPRF-203ENST00000372407 ABCB8Q9NUT2 735 aa11.18□□□□□ -0.62
PTPRF-203ENST00000372407 GDAP2Q9NXN4 497 aa11.18□□□□□ -0.62
PTPRF-203ENST00000372407 MOCS1Q9NZB8 636 aa11.18□□□□□ -0.62
PTPRF-203ENST00000372407 NUP98P52948 1817 aa11.18□□□□□ -0.62
PTPRF-203ENST00000372407 DUOX1Q9NRD9 1551 aa11.18□□□□□ -0.62
PTPRF-203ENST00000372407 A0A0X1KG70 313 aa11.18□□□□□ -0.62
PTPRF-203ENST00000372407 A0A1W2PQ72 361 aa11.18□□□□□ -0.62
PTPRF-203ENST00000372407 PRODHO43272 600 aa11.18□□□□□ -0.62
PTPRF-203ENST00000372407 TPST2O60704 377 aa11.18□□□□□ -0.62
PTPRF-203ENST00000372407 PRAMEF12O95522 483 aa11.18□□□□□ -0.62
PTPRF-203ENST00000372407 CSTF2P33240 577 aaKnown RBP eCLIP11.18□□□□□ -0.62
PTPRF-203ENST00000372407 ABHD18Q0P651 414 aa11.18□□□□□ -0.62
PTPRF-203ENST00000372407 INCA1Q0VD86 236 aa11.18□□□□□ -0.62
PTPRF-203ENST00000372407 UBAP2Q5T6F2 1119 aaKnown RBP11.18□□□□□ -0.62
PTPRF-203ENST00000372407 MBOAT1Q6ZNC8 495 aa11.18□□□□□ -0.62
PTPRF-203ENST00000372407 ERMP1Q7Z2K6 904 aa11.18□□□□□ -0.62
PTPRF-203ENST00000372407 GRPEL2Q8TAA5 225 aa11.18□□□□□ -0.62
PTPRF-203ENST00000372407 CTPS2Q9NRF8 586 aa11.18□□□□□ -0.62
PTPRF-203ENST00000372407 COMMD3Q9UBI1 195 aa11.18□□□□□ -0.62
PTPRF-203ENST00000372407 PCDHGA10Q9Y5H3 936 aa11.18□□□□□ -0.62
PTPRF-203ENST00000372407 C5P01031 1676 aa11.17□□□□□ -0.62
PTPRF-203ENST00000372407 LCHNA4D1U4 455 aa11.17□□□□□ -0.62
PTPRF-203ENST00000372407 TYROBPO43914 113 aa11.17□□□□□ -0.62
PTPRF-203ENST00000372407 PCCBP05166 539 aa11.17□□□□□ -0.62
PTPRF-203ENST00000372407 DLDP09622 509 aaKnown RBP11.17□□□□□ -0.62
PTPRF-203ENST00000372407 CBX5P45973 191 aa11.17□□□□□ -0.62
PTPRF-203ENST00000372407 KHKP50053 298 aa11.17□□□□□ -0.62
PTPRF-203ENST00000372407 LBX1P52954 281 aa11.17□□□□□ -0.62
PTPRF-203ENST00000372407 BNIP3Q12983 259 aa11.17□□□□□ -0.62
PTPRF-203ENST00000372407 MBLAC2Q68D91 279 aa11.17□□□□□ -0.62
PTPRF-203ENST00000372407 FAM110BQ8TC76 370 aa11.17□□□□□ -0.62
PTPRF-203ENST00000372407 ZNF296Q8WUU4 475 aaPredicted RBP11.17□□□□□ -0.62
PTPRF-203ENST00000372407 SUSD3Q96L08 255 aa11.17□□□□□ -0.62
PTPRF-203ENST00000372407 ZFP3Q96NJ6 502 aa11.17□□□□□ -0.62
PTPRF-203ENST00000372407 KCNS3Q9BQ31 491 aa11.17□□□□□ -0.62
PTPRF-203ENST00000372407 ASB3Q9Y575 518 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms