RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 SMAD3P84022 425 aaKnown RBP11.84□□□□□ -0.51
CLIP3-201ENST00000360535 ADPRMQ3LIE5 342 aa11.84□□□□□ -0.51
CLIP3-201ENST00000360535 ADGRF1Q5T601 910 aa11.84□□□□□ -0.51
CLIP3-201ENST00000360535 CXorf57Q6NSI4 855 aaKnown RBP11.84□□□□□ -0.51
CLIP3-201ENST00000360535 PRR23BQ6ZRT6 265 aa11.84□□□□□ -0.51
CLIP3-201ENST00000360535 APCDD1Q8J025 514 aa11.84□□□□□ -0.51
CLIP3-201ENST00000360535 RBFAQ8N0V3 343 aa11.84□□□□□ -0.51
CLIP3-201ENST00000360535 FBXO22Q8NEZ5 403 aa11.84□□□□□ -0.51
CLIP3-201ENST00000360535 FKBP10Q96AY3 582 aa11.84□□□□□ -0.51
CLIP3-201ENST00000360535 APIPQ96GX9 242 aa11.84□□□□□ -0.51
CLIP3-201ENST00000360535 PANX1Q96RD7 426 aa11.84□□□□□ -0.51
CLIP3-201ENST00000360535 ZIC5Q96T25 663 aa11.84□□□□□ -0.51
CLIP3-201ENST00000360535 RUBCNLQ9H714 662 aa11.84□□□□□ -0.51
CLIP3-201ENST00000360535 PCDH10Q9P2E7 1040 aa11.84□□□□□ -0.51
CLIP3-201ENST00000360535 VPS51Q9UID3 782 aa11.84□□□□□ -0.51
CLIP3-201ENST00000360535 SAMHD1Q9Y3Z3 626 aaKnown RBP11.84□□□□□ -0.51
CLIP3-201ENST00000360535 ZNF840PA6NDX5 716 aa11.83□□□□□ -0.52
CLIP3-201ENST00000360535 PABPN1LA6NDY0 278 aaKnown RBP11.83□□□□□ -0.52
CLIP3-201ENST00000360535 LCKP06239 509 aa11.83□□□□□ -0.52
CLIP3-201ENST00000360535 JUNBP17275 347 aaPredicted RBP11.83□□□□□ -0.52
CLIP3-201ENST00000360535 SEPHS1P49903 392 aa11.83□□□□□ -0.52
CLIP3-201ENST00000360535 NFATC2Q13469 925 aa11.83□□□□□ -0.52
CLIP3-201ENST00000360535 LAIR1Q6GTX8 287 aa11.83□□□□□ -0.52
CLIP3-201ENST00000360535 PDE12Q6L8Q7 609 aaKnown RBP11.83□□□□□ -0.52
CLIP3-201ENST00000360535 CHPT1Q8WUD6 406 aa11.83□□□□□ -0.52
CLIP3-201ENST00000360535 SLC22A12Q96S37 553 aa11.83□□□□□ -0.52
CLIP3-201ENST00000360535 KLHL25Q9H0H3 589 aa11.83□□□□□ -0.52
CLIP3-201ENST00000360535 GPN2Q9H9Y4 310 aaPredicted RBP11.83□□□□□ -0.52
CLIP3-201ENST00000360535 HMG20AQ9NP66 347 aa11.83□□□□□ -0.52
CLIP3-201ENST00000360535 ABCB10Q9NRK6 738 aa11.83□□□□□ -0.52
CLIP3-201ENST00000360535 TRPM5Q9NZQ8 1165 aa11.83□□□□□ -0.52
CLIP3-201ENST00000360535 TMEFF2Q9UIK5 374 aaPredicted RBP11.83□□□□□ -0.52
CLIP3-201ENST00000360535 ENPP5Q9UJA9 477 aa11.83□□□□□ -0.52
CLIP3-201ENST00000360535 CCL27Q9Y4X3 112 aa11.83□□□□□ -0.52
CLIP3-201ENST00000360535 PCDHGA4Q9Y5G9 962 aa11.83□□□□□ -0.52
CLIP3-201ENST00000360535 MYO7AQ13402 2215 aa11.83□□□□□ -0.52
CLIP3-201ENST00000360535 GLYATL1P3A0A0U1RQE8 302 aa11.83□□□□□ -0.52
CLIP3-201ENST00000360535 EVPLLA8MZ36 301 aa11.83□□□□□ -0.52
CLIP3-201ENST00000360535 SERPINB7O75635 380 aa11.83□□□□□ -0.52
CLIP3-201ENST00000360535 SULT1C4O75897 302 aa11.83□□□□□ -0.52
CLIP3-201ENST00000360535 CLDN9O95484 217 aa11.83□□□□□ -0.52
CLIP3-201ENST00000360535 EOMESO95936 686 aa11.83□□□□□ -0.52
CLIP3-201ENST00000360535 KRT6AP02538 564 aa11.83□□□□□ -0.52
CLIP3-201ENST00000360535 KRT6BP04259 564 aa11.83□□□□□ -0.52
CLIP3-201ENST00000360535 HMGCLP35914 325 aa11.83□□□□□ -0.52
CLIP3-201ENST00000360535 KRT6CP48668 564 aa11.83□□□□□ -0.52
CLIP3-201ENST00000360535 DGKEP52429 567 aa11.83□□□□□ -0.52
CLIP3-201ENST00000360535 CYP4F2P78329 520 aa11.83□□□□□ -0.52
CLIP3-201ENST00000360535 BCL2L1Q07817 233 aa11.83□□□□□ -0.52
CLIP3-201ENST00000360535 TUBA3CQ13748 450 aa11.83□□□□□ -0.52
CLIP3-201ENST00000360535 BTG3Q14201 252 aaPredicted RBP11.83□□□□□ -0.52
CLIP3-201ENST00000360535 CYP27C1Q4G0S4 372 aa11.83□□□□□ -0.52
CLIP3-201ENST00000360535 ZNF691Q5VV52 312 aa11.83□□□□□ -0.52
CLIP3-201ENST00000360535 ALG1LQ6GMV1 187 aa11.83□□□□□ -0.52
CLIP3-201ENST00000360535 B3GNT8Q7Z7M8 397 aa11.83□□□□□ -0.52
CLIP3-201ENST00000360535 DSG4Q86SJ6 1040 aa11.83□□□□□ -0.52
CLIP3-201ENST00000360535 PLD3Q8IV08 490 aa11.83□□□□□ -0.52
CLIP3-201ENST00000360535 SVOPLQ8N434 492 aa11.83□□□□□ -0.52
CLIP3-201ENST00000360535 FAR1Q8WVX9 515 aa11.83□□□□□ -0.52
CLIP3-201ENST00000360535 HTRA1Q92743 480 aa11.83□□□□□ -0.52
CLIP3-201ENST00000360535 MUL1Q969V5 352 aa11.83□□□□□ -0.52
CLIP3-201ENST00000360535 MTERF1Q99551 399 aaKnown RBP11.83□□□□□ -0.52
CLIP3-201ENST00000360535 SCN3BQ9NY72 215 aa11.83□□□□□ -0.52
CLIP3-201ENST00000360535 IL37Q9NZH6 218 aa11.83□□□□□ -0.52
CLIP3-201ENST00000360535 A8MU76 341 aa11.82□□□□□ -0.52
CLIP3-201ENST00000360535 KPNA4O00629 521 aaPredicted RBP11.82□□□□□ -0.52
CLIP3-201ENST00000360535 RECQL5O94762 991 aaPredicted RBP11.82□□□□□ -0.52
CLIP3-201ENST00000360535 HNF1BP35680 557 aa11.82□□□□□ -0.52
CLIP3-201ENST00000360535 MAD2L1Q13257 205 aaPredicted RBP11.82□□□□□ -0.52
CLIP3-201ENST00000360535 ZNF846Q147U1 533 aa11.82□□□□□ -0.52
CLIP3-201ENST00000360535 CTF1Q16619 201 aa11.82□□□□□ -0.52
CLIP3-201ENST00000360535 GPR153Q6NV75 609 aa11.82□□□□□ -0.52
CLIP3-201ENST00000360535 IFNL1Q8IU54 200 aa11.82□□□□□ -0.52
CLIP3-201ENST00000360535 AADATQ8N5Z0 425 aa11.82□□□□□ -0.52
CLIP3-201ENST00000360535 TTC29Q8NA56 475 aaPredicted RBP11.82□□□□□ -0.52
CLIP3-201ENST00000360535 OR52J3Q8NH60 311 aa11.82□□□□□ -0.52
CLIP3-201ENST00000360535 REXO5Q96IC2 774 aaKnown RBP11.82□□□□□ -0.52
CLIP3-201ENST00000360535 ZNF347Q96SE7 839 aa11.82□□□□□ -0.52
CLIP3-201ENST00000360535 TTPALQ9BTX7 342 aa11.82□□□□□ -0.52
CLIP3-201ENST00000360535 CLMPQ9H6B4 373 aa11.82□□□□□ -0.52
CLIP3-201ENST00000360535 MARCH5Q9NX47 278 aa11.82□□□□□ -0.52
CLIP3-201ENST00000360535 LHX3Q9UBR4 397 aa11.82□□□□□ -0.52
CLIP3-201ENST00000360535 SLC22A14Q9Y267 594 aa11.82□□□□□ -0.52
CLIP3-201ENST00000360535 PCDHB1Q9Y5F3 818 aa11.82□□□□□ -0.52
CLIP3-201ENST00000360535 CPQQ9Y646 472 aa11.82□□□□□ -0.52
CLIP3-201ENST00000360535 ANXA5P08758 320 aa11.82□□□□□ -0.52
CLIP3-201ENST00000360535 BPIP17213 487 aa11.82□□□□□ -0.52
CLIP3-201ENST00000360535 TNFRSF1BP20333 461 aa11.82□□□□□ -0.52
CLIP3-201ENST00000360535 CLK1P49759 484 aaKnown RBP11.82□□□□□ -0.52
CLIP3-201ENST00000360535 DAPP51397 102 aa11.82□□□□□ -0.52
CLIP3-201ENST00000360535 USP39Q53GS9 565 aaKnown RBP11.82□□□□□ -0.52
CLIP3-201ENST00000360535 UBE2R2Q712K3 238 aaPredicted RBP11.82□□□□□ -0.52
CLIP3-201ENST00000360535 HS6ST3Q8IZP7 471 aa11.82□□□□□ -0.52
CLIP3-201ENST00000360535 CLECL1Q8IZS7 167 aa11.82□□□□□ -0.52
CLIP3-201ENST00000360535 PPP1R14BQ96C90 147 aa11.82□□□□□ -0.52
CLIP3-201ENST00000360535 XRN2Q9H0D6 950 aaKnown RBP eCLIP11.82□□□□□ -0.52
CLIP3-201ENST00000360535 ITM2CQ9NQX7 267 aa11.82□□□□□ -0.52
CLIP3-201ENST00000360535 AASDHPPTQ9NRN7 309 aa11.82□□□□□ -0.52
CLIP3-201ENST00000360535 PPT2Q9UMR5 302 aa11.82□□□□□ -0.52
CLIP3-201ENST00000360535 OARD1Q9Y530 152 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms