RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 XPNPEP2O43895 674 aa15.49■□□□□ 0.07
HMGA1-202ENST00000347617 TLR5O60602 858 aa15.49■□□□□ 0.07
HMGA1-202ENST00000347617 LILRB3O75022 631 aa15.49■□□□□ 0.07
HMGA1-202ENST00000347617 IL6P05231 212 aa15.49■□□□□ 0.07
HMGA1-202ENST00000347617 CD86P42081 329 aa15.49■□□□□ 0.07
HMGA1-202ENST00000347617 MAP2K4P45985 399 aa15.49■□□□□ 0.07
HMGA1-202ENST00000347617 MASP1P48740 699 aa15.49■□□□□ 0.07
HMGA1-202ENST00000347617 HTRA4P83105 476 aaPredicted RBP15.49■□□□□ 0.07
HMGA1-202ENST00000347617 SLC13A2Q13183 592 aa15.49■□□□□ 0.07
HMGA1-202ENST00000347617 PPIGQ13427 754 aaKnown RBP eCLIP15.49■□□□□ 0.07
HMGA1-202ENST00000347617 TOR1AIP1Q5JTV8 583 aa15.49■□□□□ 0.07
HMGA1-202ENST00000347617 ZNF540Q8NDQ6 660 aa15.49■□□□□ 0.07
HMGA1-202ENST00000347617 SETD6Q8TBK2 473 aa15.49■□□□□ 0.07
HMGA1-202ENST00000347617 GPR152Q8TDT2 470 aa15.49■□□□□ 0.07
HMGA1-202ENST00000347617 DHRS1Q96LJ7 313 aa15.49■□□□□ 0.07
HMGA1-202ENST00000347617 SIGLEC11Q96RL6 698 aa15.49■□□□□ 0.07
HMGA1-202ENST00000347617 CCDC32Q9BV29 185 aa15.49■□□□□ 0.07
HMGA1-202ENST00000347617 NT5MQ9NPB1 228 aa15.49■□□□□ 0.07
HMGA1-202ENST00000347617 POLE4Q9NR33 117 aa15.49■□□□□ 0.07
HMGA1-202ENST00000347617 ASIC5Q9NY37 505 aa15.49■□□□□ 0.07
HMGA1-202ENST00000347617 NIPSNAP3AQ9UFN0 247 aaPredicted RBP15.49■□□□□ 0.07
HMGA1-202ENST00000347617 NUDT5Q9UKK9 219 aa15.49■□□□□ 0.07
HMGA1-202ENST00000347617 ANGPTL3Q9Y5C1 460 aa15.49■□□□□ 0.07
HMGA1-202ENST00000347617 TNPO3Q9Y5L0 923 aaKnown RBP15.49■□□□□ 0.07
HMGA1-202ENST00000347617 GMPPBQ9Y5P6 360 aa15.49■□□□□ 0.07
HMGA1-202ENST00000347617 ZNF840PA6NDX5 716 aa15.49■□□□□ 0.07
HMGA1-202ENST00000347617 IQCJ-SCHIP1C9J366 451 aaPredicted RBP15.49■□□□□ 0.07
HMGA1-202ENST00000347617 TBX1O43435 398 aa15.49■□□□□ 0.07
HMGA1-202ENST00000347617 CREG1O75629 220 aa15.49■□□□□ 0.07
HMGA1-202ENST00000347617 PEX11BO96011 259 aa15.49■□□□□ 0.07
HMGA1-202ENST00000347617 FTH1P02794 183 aa15.49■□□□□ 0.07
HMGA1-202ENST00000347617 SERPINF2P08697 491 aa15.49■□□□□ 0.07
HMGA1-202ENST00000347617 TRAPPC2P0DI81 140 aa15.49■□□□□ 0.07
HMGA1-202ENST00000347617 TRAPPC2BP0DI82 140 aa15.49■□□□□ 0.07
HMGA1-202ENST00000347617 HMGA1P17096 107 aaKnown RBP15.49■□□□□ 0.07
HMGA1-202ENST00000347617 SOX11P35716 441 aa15.49■□□□□ 0.07
HMGA1-202ENST00000347617 IST1P53990 364 aa15.49■□□□□ 0.07
HMGA1-202ENST00000347617 COPZ1P61923 177 aa15.49■□□□□ 0.07
HMGA1-202ENST00000347617 LSM3P62310 102 aaKnown RBP15.49■□□□□ 0.07
HMGA1-202ENST00000347617 KIAA0040Q15053 153 aa15.49■□□□□ 0.07
HMGA1-202ENST00000347617 PON2Q15165 354 aa15.49■□□□□ 0.07
HMGA1-202ENST00000347617 PROX2Q3B8N5 592 aa15.49■□□□□ 0.07
HMGA1-202ENST00000347617 FBXO43Q4G163 708 aa15.49■□□□□ 0.07
HMGA1-202ENST00000347617 RUNDC3AQ59EK9 446 aa15.49■□□□□ 0.07
HMGA1-202ENST00000347617 TPRG1LQ5T0D9 272 aa15.49■□□□□ 0.07
HMGA1-202ENST00000347617 CCDC81Q6ZN84 652 aa15.49■□□□□ 0.07
HMGA1-202ENST00000347617 Q6ZSR9 355 aa15.49■□□□□ 0.07
HMGA1-202ENST00000347617 KDELC2Q7Z4H8 507 aa15.49■□□□□ 0.07
HMGA1-202ENST00000347617 UBE2Q1Q7Z7E8 422 aa15.49■□□□□ 0.07
HMGA1-202ENST00000347617 LDB1Q86U70 411 aaPredicted RBP15.49■□□□□ 0.07
HMGA1-202ENST00000347617 CCDC103Q8IW40 242 aa15.49■□□□□ 0.07
HMGA1-202ENST00000347617 GALNT6Q8NCL4 622 aa15.49■□□□□ 0.07
HMGA1-202ENST00000347617 OR7G1Q8NGA0 311 aa15.49■□□□□ 0.07
HMGA1-202ENST00000347617 FUBP1Q96AE4 644 aaKnown RBP15.49■□□□□ 0.07
HMGA1-202ENST00000347617 PDLIM5Q96HC4 596 aaKnown RBP15.49■□□□□ 0.07
HMGA1-202ENST00000347617 PYURFQ96I23 114 aa15.49■□□□□ 0.07
HMGA1-202ENST00000347617 TBATAQ96M53 351 aa15.49■□□□□ 0.07
HMGA1-202ENST00000347617 THUMPD3Q9BV44 507 aaKnown RBP15.49■□□□□ 0.07
HMGA1-202ENST00000347617 PCDH12Q9NPG4 1184 aa15.49■□□□□ 0.07
HMGA1-202ENST00000347617 MRPL17Q9NRX2 175 aaKnown RBP15.49■□□□□ 0.07
HMGA1-202ENST00000347617 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP15.49■□□□□ 0.073e-28■■■□□ 14.8
HMGA1-202ENST00000347617 NUDT4Q9NZJ9 180 aa15.49■□□□□ 0.07
HMGA1-202ENST00000347617 UXTQ9UBK9 157 aaPredicted RBP15.49■□□□□ 0.07
HMGA1-202ENST00000347617 NEUROG3Q9Y4Z2 214 aa15.49■□□□□ 0.07
HMGA1-202ENST00000347617 SLC12A8A0AV02 714 aa15.48■□□□□ 0.07
HMGA1-202ENST00000347617 AIREO43918 545 aa15.48■□□□□ 0.07
HMGA1-202ENST00000347617 KRT6AP02538 564 aa15.48■□□□□ 0.07
HMGA1-202ENST00000347617 KRT6BP04259 564 aa15.48■□□□□ 0.07
HMGA1-202ENST00000347617 MMP2P08253 660 aa15.48■□□□□ 0.07
HMGA1-202ENST00000347617 ATXN1LP0C7T5 689 aaKnown RBP15.48■□□□□ 0.07
HMGA1-202ENST00000347617 ALDH4A1P30038 563 aa15.48■□□□□ 0.07
HMGA1-202ENST00000347617 CTSKP43235 329 aa15.48■□□□□ 0.07
HMGA1-202ENST00000347617 PRIM2P49643 509 aa15.48■□□□□ 0.07
HMGA1-202ENST00000347617 LBX1P52954 281 aa15.48■□□□□ 0.07
HMGA1-202ENST00000347617 ITKQ08881 620 aa15.48■□□□□ 0.07
HMGA1-202ENST00000347617 VEPH1Q14D04 833 aa15.48■□□□□ 0.07
HMGA1-202ENST00000347617 MAD2L1BPQ15013 274 aaPredicted RBP15.48■□□□□ 0.07
HMGA1-202ENST00000347617 TSNQ15631 228 aaKnown RBP15.48■□□□□ 0.07
HMGA1-202ENST00000347617 HECTD3Q5T447 861 aa15.48■□□□□ 0.07
HMGA1-202ENST00000347617 KDM4DQ6B0I6 523 aa15.48■□□□□ 0.07
HMGA1-202ENST00000347617 DESI1Q6ICB0 168 aa15.48■□□□□ 0.07
HMGA1-202ENST00000347617 ERAP2Q6P179 960 aa15.48■□□□□ 0.07
HMGA1-202ENST00000347617 C14orf80Q86SX3 495 aa15.48■□□□□ 0.07
HMGA1-202ENST00000347617 CALHM3Q86XJ0 350 aa15.48■□□□□ 0.07
HMGA1-202ENST00000347617 FAM86B1Q8N7N1 296 aa15.48■□□□□ 0.07
HMGA1-202ENST00000347617 ASCC1Q8N9N2 400 aaKnown RBP15.48■□□□□ 0.07
HMGA1-202ENST00000347617 BRSK1Q8TDC3 778 aa15.48■□□□□ 0.07
HMGA1-202ENST00000347617 FRS2Q8WU20 508 aa15.48■□□□□ 0.07
HMGA1-202ENST00000347617 PITX2Q99697 317 aa15.48■□□□□ 0.07
HMGA1-202ENST00000347617 EMILIN2Q9BXX0 1053 aa15.48■□□□□ 0.07
HMGA1-202ENST00000347617 ALOXE3Q9BYJ1 711 aa15.48■□□□□ 0.07
HMGA1-202ENST00000347617 TRPM5Q9NZQ8 1165 aa15.48■□□□□ 0.07
HMGA1-202ENST00000347617 ZNF225Q9UK10 706 aa15.48■□□□□ 0.07
HMGA1-202ENST00000347617 NDRG4Q9ULP0 352 aaKnown RBP15.48■□□□□ 0.07
HMGA1-202ENST00000347617 SAMD4AQ9UPU9 718 aaKnown RBP15.48■□□□□ 0.07
HMGA1-202ENST00000347617 COMMD10Q9Y6G5 202 aa15.48■□□□□ 0.07
HMGA1-202ENST00000347617 DOCK4Q8N1I0 1966 aa15.48■□□□□ 0.07
HMGA1-202ENST00000347617 ZBBXA8MT70 800 aa15.47■□□□□ 0.07
HMGA1-202ENST00000347617 AXIN1O15169 862 aa15.47■□□□□ 0.07
HMGA1-202ENST00000347617 ERN1O75460 977 aaKnown RBP15.47■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms