RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 TMEM220Q6QAJ8 160 aa12.5□□□□□ -0.41
CLK3-201ENST00000345005 UBE2R2Q712K3 238 aaPredicted RBP12.5□□□□□ -0.41
CLK3-201ENST00000345005 LARP4Q71RC2 724 aaKnown RBP eCLIP12.5□□□□□ -0.41
CLK3-201ENST00000345005 SYVN1Q86TM6 617 aa12.5□□□□□ -0.41
CLK3-201ENST00000345005 RALGPS2Q86X27 583 aaPredicted RBP12.5□□□□□ -0.41
CLK3-201ENST00000345005 TCAIMQ8N3R3 496 aa12.5□□□□□ -0.41
CLK3-201ENST00000345005 CHCHD4Q8N4Q1 142 aa12.5□□□□□ -0.41
CLK3-201ENST00000345005 TSPEARQ8WU66 669 aa12.5□□□□□ -0.41
CLK3-201ENST00000345005 SKA2Q8WVK7 121 aaPredicted RBP12.5□□□□□ -0.41
CLK3-201ENST00000345005 LRTOMTQ8WZ04 291 aa12.5□□□□□ -0.41
CLK3-201ENST00000345005 RHBDF1Q96CC6 855 aa12.5□□□□□ -0.41
CLK3-201ENST00000345005 ITPKCQ96DU7 683 aa12.5□□□□□ -0.41
CLK3-201ENST00000345005 ERLEC1Q96DZ1 483 aa12.5□□□□□ -0.41
CLK3-201ENST00000345005 ZNF514Q96K75 400 aaPredicted RBP12.5□□□□□ -0.41
CLK3-201ENST00000345005 HIST1H2AHQ96KK5 128 aa12.5□□□□□ -0.41
CLK3-201ENST00000345005 HIST1H2AJQ99878 128 aa12.5□□□□□ -0.41
CLK3-201ENST00000345005 TUBA1CQ9BQE3 449 aa12.5□□□□□ -0.41
CLK3-201ENST00000345005 H2AFJQ9BTM1 129 aa12.5□□□□□ -0.41
CLK3-201ENST00000345005 TTYH1Q9H313 450 aaPredicted RBP12.5□□□□□ -0.41
CLK3-201ENST00000345005 C8orf33Q9H7E9 229 aaPredicted RBP12.5□□□□□ -0.41
CLK3-201ENST00000345005 FBRSQ9HAH7 460 aa12.5□□□□□ -0.41
CLK3-201ENST00000345005 CCM2LQ9NUG4 571 aaPredicted RBP12.5□□□□□ -0.41
CLK3-201ENST00000345005 GID8Q9NWU2 228 aa12.5□□□□□ -0.41
CLK3-201ENST00000345005 ANGPTL3Q9Y5C1 460 aa12.5□□□□□ -0.41
CLK3-201ENST00000345005 A0A0C4DFX4 3053 aa12.49□□□□□ -0.41
CLK3-201ENST00000345005 E7ENX8 843 aa12.49□□□□□ -0.41
CLK3-201ENST00000345005 GFYI3L273 518 aa12.49□□□□□ -0.41
CLK3-201ENST00000345005 MRASO14807 208 aa12.49□□□□□ -0.41
CLK3-201ENST00000345005 SOD1P00441 154 aa12.49□□□□□ -0.41
CLK3-201ENST00000345005 OTCP00480 354 aa12.49□□□□□ -0.41
CLK3-201ENST00000345005 HNRNPCP07910 306 aaKnown RBP eCLIP12.49□□□□□ -0.41
CLK3-201ENST00000345005 CYP2A7P20853 494 aa12.49□□□□□ -0.41
CLK3-201ENST00000345005 DRD3P35462 400 aa12.49□□□□□ -0.41
CLK3-201ENST00000345005 MAPK9P45984 424 aa12.49□□□□□ -0.41
CLK3-201ENST00000345005 PIK3CGP48736 1102 aa12.49□□□□□ -0.41
CLK3-201ENST00000345005 HSPA7P48741 367 aa12.49□□□□□ -0.41
CLK3-201ENST00000345005 FOXA1P55317 472 aa12.49□□□□□ -0.41
CLK3-201ENST00000345005 FOXM1Q08050 763 aa12.49□□□□□ -0.41
CLK3-201ENST00000345005 STARD3Q14849 445 aa12.49□□□□□ -0.41
CLK3-201ENST00000345005 NRF1Q16656 503 aa12.49□□□□□ -0.41
CLK3-201ENST00000345005 AGKQ53H12 422 aa12.49□□□□□ -0.41
CLK3-201ENST00000345005 COQ5Q5HYK3 327 aa12.49□□□□□ -0.41
CLK3-201ENST00000345005 C8orf82Q6P1X6 216 aaPredicted RBP12.49□□□□□ -0.41
CLK3-201ENST00000345005 TTC33Q6PID6 262 aaPredicted RBP12.49□□□□□ -0.41
CLK3-201ENST00000345005 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP12.49□□□□□ -0.41
CLK3-201ENST00000345005 Q6ZNX1 250 aa12.49□□□□□ -0.41
CLK3-201ENST00000345005 GOLGA7Q7Z5G4 137 aa12.49□□□□□ -0.41
CLK3-201ENST00000345005 PATL1Q86TB9 770 aaKnown RBP12.49□□□□□ -0.41
CLK3-201ENST00000345005 DDIASQ8IXT1 998 aa12.49□□□□□ -0.41
CLK3-201ENST00000345005 AADATQ8N5Z0 425 aa12.49□□□□□ -0.41
CLK3-201ENST00000345005 DEFB123Q8N688 67 aa12.49□□□□□ -0.41
CLK3-201ENST00000345005 BEND7Q8N7W2 519 aaPredicted RBP12.49□□□□□ -0.41
CLK3-201ENST00000345005 MCOLN3Q8TDD5 553 aa12.49□□□□□ -0.41
CLK3-201ENST00000345005 C17orf50Q8WW18 174 aa12.49□□□□□ -0.41
CLK3-201ENST00000345005 BORCS5Q969J3 196 aa12.49□□□□□ -0.41
CLK3-201ENST00000345005 TMEM159Q96B96 161 aa12.49□□□□□ -0.41
CLK3-201ENST00000345005 NOL11Q9H8H0 719 aaKnown RBP12.49□□□□□ -0.41
CLK3-201ENST00000345005 TRIM39Q9HCM9 518 aa12.49□□□□□ -0.41
CLK3-201ENST00000345005 ARL15Q9NXU5 204 aa12.49□□□□□ -0.41
CLK3-201ENST00000345005 OPTCQ9UBM4 332 aa12.49□□□□□ -0.41
CLK3-201ENST00000345005 PACSIN3Q9UKS6 424 aa12.49□□□□□ -0.41
CLK3-201ENST00000345005 PDE10AQ9Y233 779 aa12.49□□□□□ -0.41
CLK3-201ENST00000345005 ASB1Q9Y576 335 aa12.49□□□□□ -0.41
CLK3-201ENST00000345005 UNC80Q8N2C7 3258 aa12.49□□□□□ -0.41
CLK3-201ENST00000345005 K7EPI3 171 aa12.48□□□□□ -0.41
CLK3-201ENST00000345005 K7ESM1 405 aa12.48□□□□□ -0.41
CLK3-201ENST00000345005 PIP5K1BO14986 540 aa12.48□□□□□ -0.41
CLK3-201ENST00000345005 VEGFDO43915 354 aa12.48□□□□□ -0.41
CLK3-201ENST00000345005 NOL3O60936 208 aaKnown RBP12.48□□□□□ -0.41
CLK3-201ENST00000345005 PCDH8O95206 1070 aa12.48□□□□□ -0.41
CLK3-201ENST00000345005 GSTM1P09488 218 aa12.48□□□□□ -0.41
CLK3-201ENST00000345005 UMPSP11172 480 aa12.48□□□□□ -0.41
CLK3-201ENST00000345005 FASP25445 335 aa12.48□□□□□ -0.41
CLK3-201ENST00000345005 PCSK6P29122 969 aa12.48□□□□□ -0.41
CLK3-201ENST00000345005 GGT5P36269 586 aa12.48□□□□□ -0.41
CLK3-201ENST00000345005 HNMTP50135 292 aa12.48□□□□□ -0.41
CLK3-201ENST00000345005 CTSCP53634 463 aa12.48□□□□□ -0.41
CLK3-201ENST00000345005 AP1S2P56377 157 aa12.48□□□□□ -0.41
CLK3-201ENST00000345005 GSTM4Q03013 218 aa12.48□□□□□ -0.41
CLK3-201ENST00000345005 GTF2H3Q13889 308 aa12.48□□□□□ -0.41
CLK3-201ENST00000345005 C18orf21Q32NC0 220 aaPredicted RBP12.48□□□□□ -0.41
CLK3-201ENST00000345005 BCL7AQ4VC05 210 aa12.48□□□□□ -0.41
CLK3-201ENST00000345005 SYTL3Q4VX76 610 aa12.48□□□□□ -0.41
CLK3-201ENST00000345005 AGBL4Q5VU57 503 aa12.48□□□□□ -0.41
CLK3-201ENST00000345005 TRMT11Q7Z4G4 463 aaKnown RBP12.48□□□□□ -0.41
CLK3-201ENST00000345005 VRK3Q8IV63 474 aa12.48□□□□□ -0.41
CLK3-201ENST00000345005 HDDC3Q8N4P3 179 aa12.48□□□□□ -0.41
CLK3-201ENST00000345005 RNF148Q8N7C7 305 aa12.48□□□□□ -0.41
CLK3-201ENST00000345005 GLMNQ92990 594 aa12.48□□□□□ -0.41
CLK3-201ENST00000345005 KCNA7Q96RP8 456 aa12.48□□□□□ -0.41
CLK3-201ENST00000345005 GABRG3Q99928 467 aa12.48□□□□□ -0.41
CLK3-201ENST00000345005 IPPKQ9H8X2 491 aa12.48□□□□□ -0.41
CLK3-201ENST00000345005 ZNF225Q9UK10 706 aa12.48□□□□□ -0.41
CLK3-201ENST00000345005 PRUNE2Q8WUY3 3088 aa12.48□□□□□ -0.41
CLK3-201ENST00000345005 A0A1B0GTL3 188 aa12.48□□□□□ -0.41
CLK3-201ENST00000345005 STK16O75716 305 aa12.48□□□□□ -0.41
CLK3-201ENST00000345005 OR4F21O95013 312 aa12.48□□□□□ -0.41
CLK3-201ENST00000345005 MATN4O95460 622 aa12.48□□□□□ -0.41
CLK3-201ENST00000345005 GPIP06744 558 aa12.48□□□□□ -0.41
CLK3-201ENST00000345005 HSD17B1P14061 328 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms