RNA–Protein interactions for RNA: ENST00000343508.7

CSMD3-203, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best) BASIC

Gene CSMD3, Length 13,018 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-203ENST00000343508 KIF18BQ86Y91 864 aa4.68□□□□□ -1.66
CSMD3-203ENST00000343508 ZNF655Q8N720 491 aaPredicted RBP4.68□□□□□ -1.66
CSMD3-203ENST00000343508 MRPS31Q92665 395 aaKnown RBP4.68□□□□□ -1.66
CSMD3-203ENST00000343508 TMEM169Q96HH4 297 aa4.68□□□□□ -1.66
CSMD3-203ENST00000343508 KCNC2Q96PR1 638 aa4.68□□□□□ -1.66
CSMD3-203ENST00000343508 P2RX7Q99572 595 aaKnown RBP4.68□□□□□ -1.66
CSMD3-203ENST00000343508 FAM120CQ9NX05 1096 aaKnown RBP4.68□□□□□ -1.66
CSMD3-203ENST00000343508 MIA3Q5JRA6 1907 aa4.68□□□□□ -1.66
CSMD3-203ENST00000343508 FAM86C2PA6NEL3 165 aa4.68□□□□□ -1.66
CSMD3-203ENST00000343508 TP73O15350 636 aa4.68□□□□□ -1.66
CSMD3-203ENST00000343508 APOL3O95236 402 aa4.68□□□□□ -1.66
CSMD3-203ENST00000343508 PPP3R1P63098 170 aa4.68□□□□□ -1.66
CSMD3-203ENST00000343508 MTAPQ13126 283 aa4.68□□□□□ -1.66
CSMD3-203ENST00000343508 TARDBPQ13148 414 aaKnown RBP eCLIP4.68□□□□□ -1.66
CSMD3-203ENST00000343508 VGLL4Q14135 290 aa4.68□□□□□ -1.66
CSMD3-203ENST00000343508 GCNT6Q5T4J0 391 aa4.68□□□□□ -1.66
CSMD3-203ENST00000343508 ZNF730Q6ZMV8 503 aa4.68□□□□□ -1.66
CSMD3-203ENST00000343508 ZNF767PQ75MW2 155 aa4.68□□□□□ -1.66
CSMD3-203ENST00000343508 PTF1AQ7RTS3 328 aa4.68□□□□□ -1.66
CSMD3-203ENST00000343508 SLC38A4Q969I6 547 aa4.68□□□□□ -1.66
CSMD3-203ENST00000343508 RNF19AQ9NV58 838 aa4.68□□□□□ -1.66
CSMD3-203ENST00000343508 NLE1Q9NVX2 485 aaPredicted RBP4.68□□□□□ -1.66
CSMD3-203ENST00000343508 PAQR5Q9NXK6 330 aaPredicted RBP4.68□□□□□ -1.66
CSMD3-203ENST00000343508 MLXQ9UH92 298 aa4.68□□□□□ -1.66
CSMD3-203ENST00000343508 PCDHGB5Q9Y5G0 923 aa4.68□□□□□ -1.66
CSMD3-203ENST00000343508 CITO14578 2027 aa4.68□□□□□ -1.66
CSMD3-203ENST00000343508 GLYATL1P3A0A0U1RQE8 302 aa4.68□□□□□ -1.66
CSMD3-203ENST00000343508 SLC28A2O43868 658 aa4.68□□□□□ -1.66
CSMD3-203ENST00000343508 FOXD2O60548 495 aaPredicted RBP4.68□□□□□ -1.66
CSMD3-203ENST00000343508 NME6O75414 186 aaPredicted RBP4.68□□□□□ -1.66
CSMD3-203ENST00000343508 CRYZL1O95825 349 aa4.68□□□□□ -1.66
CSMD3-203ENST00000343508 C1RP00736 705 aa4.68□□□□□ -1.66
CSMD3-203ENST00000343508 HLA-DQB2P05538 268 aa4.68□□□□□ -1.66
CSMD3-203ENST00000343508 ITGB1P05556 798 aa4.68□□□□□ -1.66
CSMD3-203ENST00000343508 ZNF10P21506 573 aaPredicted RBP4.68□□□□□ -1.66
CSMD3-203ENST00000343508 MATN1P21941 496 aa4.68□□□□□ -1.66
CSMD3-203ENST00000343508 CSTF2P33240 577 aaKnown RBP eCLIP4.68□□□□□ -1.66
CSMD3-203ENST00000343508 XKP51811 444 aa4.68□□□□□ -1.66
CSMD3-203ENST00000343508 C6orf136Q5SQH8 315 aa4.68□□□□□ -1.66
CSMD3-203ENST00000343508 NOL9Q5SY16 702 aaKnown RBP4.68□□□□□ -1.66
CSMD3-203ENST00000343508 ZNF691Q5VV52 312 aa4.68□□□□□ -1.66
CSMD3-203ENST00000343508 TMEM236Q5W0B7 351 aa4.68□□□□□ -1.66
CSMD3-203ENST00000343508 TMPRSS11BQ86T26 416 aa4.68□□□□□ -1.66
CSMD3-203ENST00000343508 SLC51AQ86UW1 340 aa4.68□□□□□ -1.66
CSMD3-203ENST00000343508 ZFAND4Q86XD8 727 aa4.68□□□□□ -1.66
CSMD3-203ENST00000343508 CNIH3Q8TBE1 160 aa4.68□□□□□ -1.66
CSMD3-203ENST00000343508 ERLEC1Q96DZ1 483 aa4.68□□□□□ -1.66
CSMD3-203ENST00000343508 ZNF510Q9Y2H8 683 aa4.68□□□□□ -1.66
CSMD3-203ENST00000343508 IRAK2O43187 625 aa4.68□□□□□ -1.66
CSMD3-203ENST00000343508 IFNGP01579 166 aa4.68□□□□□ -1.66
CSMD3-203ENST00000343508 CRHBPP24387 322 aa4.68□□□□□ -1.66
CSMD3-203ENST00000343508 GJA9P57773 515 aa4.68□□□□□ -1.66
CSMD3-203ENST00000343508 CDK5R2Q13319 367 aa4.68□□□□□ -1.66
CSMD3-203ENST00000343508 AMIGO1Q86WK6 493 aa4.68□□□□□ -1.66
CSMD3-203ENST00000343508 TMEM192Q8IY95 271 aa4.68□□□□□ -1.66
CSMD3-203ENST00000343508 OR10G2Q8NGC3 310 aa4.68□□□□□ -1.66
CSMD3-203ENST00000343508 GANCQ8TET4 914 aa4.68□□□□□ -1.66
CSMD3-203ENST00000343508 C12orf42Q96LP6 360 aa4.68□□□□□ -1.66
CSMD3-203ENST00000343508 TWNKQ96RR1 684 aa4.68□□□□□ -1.66
CSMD3-203ENST00000343508 SLC29A3Q9BZD2 475 aa4.68□□□□□ -1.66
CSMD3-203ENST00000343508 KCNH6Q9H252 994 aa4.68□□□□□ -1.66
CSMD3-203ENST00000343508 ZBTB20Q9HC78 741 aaPredicted RBP4.68□□□□□ -1.66
CSMD3-203ENST00000343508 C11orf16Q9NQ32 467 aa4.68□□□□□ -1.66
CSMD3-203ENST00000343508 EMCNQ9ULC0 261 aa4.68□□□□□ -1.66
CSMD3-203ENST00000343508 DNAJC15Q9Y5T4 150 aa4.68□□□□□ -1.66
CSMD3-203ENST00000343508 A0A096LPI6 279 aa4.68□□□□□ -1.66
CSMD3-203ENST00000343508 MSI1O43347 362 aaKnown RBP4.68□□□□□ -1.66
CSMD3-203ENST00000343508 ATG13O75143 517 aa4.68□□□□□ -1.66
CSMD3-203ENST00000343508 PGK1P00558 417 aa4.68□□□□□ -1.66
CSMD3-203ENST00000343508 ZNF26P17031 533 aaPredicted RBP4.68□□□□□ -1.66
CSMD3-203ENST00000343508 GTF2E2P29084 291 aaKnown RBP4.68□□□□□ -1.66
CSMD3-203ENST00000343508 SMSP52788 366 aa4.68□□□□□ -1.66
CSMD3-203ENST00000343508 CDKL1Q00532 357 aa4.68□□□□□ -1.66
CSMD3-203ENST00000343508 TAZQ16635 292 aa4.68□□□□□ -1.66
CSMD3-203ENST00000343508 TSTQ16762 297 aaKnown RBP4.68□□□□□ -1.66
CSMD3-203ENST00000343508 SLC2A7Q6PXP3 512 aa4.68□□□□□ -1.66
CSMD3-203ENST00000343508 LARP4Q71RC2 724 aaKnown RBP eCLIP4.68□□□□□ -1.66
CSMD3-203ENST00000343508 SERPINA9Q86WD7 417 aa4.68□□□□□ -1.66
CSMD3-203ENST00000343508 PIWIL1Q96J94 861 aaKnown RBP4.68□□□□□ -1.66
CSMD3-203ENST00000343508 NPY6RQ99463 290 aa4.68□□□□□ -1.66
CSMD3-203ENST00000343508 ZNF717Q9BY31 904 aaPredicted RBP4.68□□□□□ -1.66
CSMD3-203ENST00000343508 VPS51Q9UID3 782 aa4.68□□□□□ -1.66
CSMD3-203ENST00000343508 INTS6Q9UL03 887 aaKnown RBP4.68□□□□□ -1.66
CSMD3-203ENST00000343508 POU2F1P14859 743 aa4.68□□□□□ -1.66
CSMD3-203ENST00000343508 PBLDP30039 288 aaPredicted RBP4.68□□□□□ -1.66
CSMD3-203ENST00000343508 MRPS6P82932 125 aaKnown RBP4.68□□□□□ -1.66
CSMD3-203ENST00000343508 SELPLGQ14242 412 aa4.68□□□□□ -1.66
CSMD3-203ENST00000343508 GK3PQ14409 553 aa4.68□□□□□ -1.66
CSMD3-203ENST00000343508 CES5AQ6NT32 575 aa4.68□□□□□ -1.66
CSMD3-203ENST00000343508 MSANTD2Q6P1R3 559 aa4.68□□□□□ -1.66
CSMD3-203ENST00000343508 SIAH1Q8IUQ4 282 aa4.68□□□□□ -1.66
CSMD3-203ENST00000343508 SMAD5Q99717 465 aaKnown RBP4.68□□□□□ -1.66
CSMD3-203ENST00000343508 TRPS1Q9UHF7 1281 aa4.68□□□□□ -1.66
CSMD3-203ENST00000343508 A0A1B0GVM2 712 aa4.68□□□□□ -1.66
CSMD3-203ENST00000343508 C7orf72A4D263 438 aa4.68□□□□□ -1.66
CSMD3-203ENST00000343508 SMIM10L2AP0DMW4 78 aa4.68□□□□□ -1.66
CSMD3-203ENST00000343508 SMIM10L2BP0DMW5 78 aa4.68□□□□□ -1.66
CSMD3-203ENST00000343508 SPAM1P38567 509 aa4.68□□□□□ -1.66
CSMD3-203ENST00000343508 EPHB3P54753 998 aa4.68□□□□□ -1.66
CSMD3-203ENST00000343508 CDH12P55289 794 aa4.68□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms