RNA–Protein interactions for RNA: ENST00000343060.4

HOXA1-201, Transcript of homeobox A1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXA1, Length 2,517 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1-201ENST00000343060 FAM171A1Q5VUB5 890 aa9.43□□□□□ -0.9
HOXA1-201ENST00000343060 ALG1LQ6GMV1 187 aa9.43□□□□□ -0.9
HOXA1-201ENST00000343060 KIAA1841Q6NSI8 718 aa9.43□□□□□ -0.9
HOXA1-201ENST00000343060 DNAJC22Q8N4W6 341 aa9.43□□□□□ -0.9
HOXA1-201ENST00000343060 PSD4Q8NDX1 1056 aa9.43□□□□□ -0.9
HOXA1-201ENST00000343060 MYDGFQ969H8 173 aa9.43□□□□□ -0.9
HOXA1-201ENST00000343060 TRIM63Q969Q1 353 aa9.43□□□□□ -0.9
HOXA1-201ENST00000343060 PSMG2Q969U7 264 aa9.43□□□□□ -0.9
HOXA1-201ENST00000343060 LINGO1Q96FE5 620 aa9.43□□□□□ -0.9
HOXA1-201ENST00000343060 TMEM246Q9BRR3 403 aa9.43□□□□□ -0.9
HOXA1-201ENST00000343060 ITM2CQ9NQX7 267 aa9.43□□□□□ -0.9
HOXA1-201ENST00000343060 KRT84Q9NSB2 600 aa9.43□□□□□ -0.9
HOXA1-201ENST00000343060 ADPRHL2Q9NX46 363 aa9.43□□□□□ -0.9
HOXA1-201ENST00000343060 TRMT6Q9UJA5 497 aaKnown RBP9.43□□□□□ -0.9
HOXA1-201ENST00000343060 VPS9D1Q9Y2B5 631 aa9.43□□□□□ -0.9
HOXA1-201ENST00000343060 PCDHGB2Q9Y5G2 931 aa9.43□□□□□ -0.9
HOXA1-201ENST00000343060 PCDHGA6Q9Y5G7 932 aa9.43□□□□□ -0.9
HOXA1-201ENST00000343060 KLK4Q9Y5K2 254 aa9.43□□□□□ -0.9
HOXA1-201ENST00000343060 MRPL42Q9Y6G3 142 aaKnown RBP9.43□□□□□ -0.9
HOXA1-201ENST00000343060 MICAL3Q7RTP6 2002 aa9.43□□□□□ -0.9
HOXA1-201ENST00000343060 IGLV3-10A0A075B6K4 115 aa9.43□□□□□ -0.9
HOXA1-201ENST00000343060 HMX3A6NHT5 357 aa9.43□□□□□ -0.9
HOXA1-201ENST00000343060 ARVCFO00192 962 aa9.43□□□□□ -0.9
HOXA1-201ENST00000343060 ARHGAP33O14559 1287 aa9.43□□□□□ -0.9
HOXA1-201ENST00000343060 RGS14O43566 566 aa9.43□□□□□ -0.9
HOXA1-201ENST00000343060 MMP3P08254 477 aa9.43□□□□□ -0.9
HOXA1-201ENST00000343060 PKMP14618 531 aaKnown RBP9.43□□□□□ -0.9
HOXA1-201ENST00000343060 SLC2A4P14672 509 aa9.43□□□□□ -0.9
HOXA1-201ENST00000343060 ITGB6P18564 788 aa9.43□□□□□ -0.9
HOXA1-201ENST00000343060 PBX3P40426 434 aa9.43□□□□□ -0.9
HOXA1-201ENST00000343060 SLC19A1P41440 591 aa9.43□□□□□ -0.9
HOXA1-201ENST00000343060 PRIM2P49643 509 aa9.43□□□□□ -0.9
HOXA1-201ENST00000343060 P2RX3P56373 397 aa9.43□□□□□ -0.9
HOXA1-201ENST00000343060 IL2P60568 153 aa9.43□□□□□ -0.9
HOXA1-201ENST00000343060 IL10RBQ08334 325 aa9.43□□□□□ -0.9
HOXA1-201ENST00000343060 PTPRNQ16849 979 aa9.43□□□□□ -0.9
HOXA1-201ENST00000343060 BCL7AQ4VC05 210 aa9.43□□□□□ -0.9
HOXA1-201ENST00000343060 ZNF517Q6ZMY9 492 aaPredicted RBP9.43□□□□□ -0.9
HOXA1-201ENST00000343060 FLCNQ8NFG4 579 aa9.43□□□□□ -0.9
HOXA1-201ENST00000343060 RIPOR3Q96MK2 946 aa9.43□□□□□ -0.9
HOXA1-201ENST00000343060 HBEGFQ99075 208 aa9.43□□□□□ -0.9
HOXA1-201ENST00000343060 REXO4Q9GZR2 422 aaKnown RBP9.43□□□□□ -0.9
HOXA1-201ENST00000343060 POLR1EQ9GZS1 481 aaKnown RBP9.43□□□□□ -0.9
HOXA1-201ENST00000343060 DDX28Q9NUL7 540 aaKnown RBP9.43□□□□□ -0.9
HOXA1-201ENST00000343060 SIRT5Q9NXA8 310 aa9.43□□□□□ -0.9
HOXA1-201ENST00000343060 TAS2R9Q9NYW1 312 aa9.43□□□□□ -0.9
HOXA1-201ENST00000343060 PDP1Q9P0J1 537 aaPredicted RBP9.43□□□□□ -0.9
HOXA1-201ENST00000343060 FAM25AB3EWG3 89 aa9.42□□□□□ -0.9
HOXA1-201ENST00000343060 FAM25CB3EWG5 89 aa9.42□□□□□ -0.9
HOXA1-201ENST00000343060 FAM25GB3EWG6 89 aa9.42□□□□□ -0.9
HOXA1-201ENST00000343060 SLC28A1O00337 649 aa9.42□□□□□ -0.9
HOXA1-201ENST00000343060 NDUFS3O75489 264 aa9.42□□□□□ -0.9
HOXA1-201ENST00000343060 WDR47O94967 919 aa9.42□□□□□ -0.9
HOXA1-201ENST00000343060 CNPP09543 421 aaKnown RBP9.42□□□□□ -0.9
HOXA1-201ENST00000343060 ADORA3P0DMS8 318 aa9.42□□□□□ -0.9
HOXA1-201ENST00000343060 RFX2P48378 723 aa9.42□□□□□ -0.9
HOXA1-201ENST00000343060 CAMK2GQ13555 558 aaPredicted RBP9.42□□□□□ -0.9
HOXA1-201ENST00000343060 GTF2H2Q13888 395 aa9.42□□□□□ -0.9
HOXA1-201ENST00000343060 GTF2H3Q13889 308 aa9.42□□□□□ -0.9
HOXA1-201ENST00000343060 GTF2H2CQ6P1K8 395 aa9.42□□□□□ -0.9
HOXA1-201ENST00000343060 SUSD1Q6UWL2 747 aa9.42□□□□□ -0.9
HOXA1-201ENST00000343060 ZNF551Q7Z340 670 aaPredicted RBP9.42□□□□□ -0.9
HOXA1-201ENST00000343060 TRIM46Q7Z4K8 759 aa9.42□□□□□ -0.9
HOXA1-201ENST00000343060 SCD5Q86SK9 330 aa9.42□□□□□ -0.9
HOXA1-201ENST00000343060 LIX1Q8N485 282 aa9.42□□□□□ -0.9
HOXA1-201ENST00000343060 CPA6Q8N4T0 437 aa9.42□□□□□ -0.9
HOXA1-201ENST00000343060 SIDT2Q8NBJ9 832 aaKnown RBP9.42□□□□□ -0.9
HOXA1-201ENST00000343060 EEF1AKMT1Q8WVE0 214 aa9.42□□□□□ -0.9
HOXA1-201ENST00000343060 KCNJ9Q92806 393 aa9.42□□□□□ -0.9
HOXA1-201ENST00000343060 UBE2FQ969M7 185 aa9.42□□□□□ -0.9
HOXA1-201ENST00000343060 SLC39A13Q96H72 371 aa9.42□□□□□ -0.9
HOXA1-201ENST00000343060 EGLN2Q96KS0 407 aa9.42□□□□□ -0.9
HOXA1-201ENST00000343060 OR52E6Q96RD3 313 aa9.42□□□□□ -0.9
HOXA1-201ENST00000343060 SEMA3CQ99985 751 aa9.42□□□□□ -0.9
HOXA1-201ENST00000343060 ZYG11BQ9C0D3 744 aa9.42□□□□□ -0.9
HOXA1-201ENST00000343060 OR51E2Q9H255 320 aa9.42□□□□□ -0.9
HOXA1-201ENST00000343060 C3orf14Q9HBI5 128 aa9.42□□□□□ -0.9
HOXA1-201ENST00000343060 RASSF1Q9NS23 344 aa9.42□□□□□ -0.9
HOXA1-201ENST00000343060 TRMT13Q9NUP7 481 aaKnown RBP9.42□□□□□ -0.9
HOXA1-201ENST00000343060 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP9.42□□□□□ -0.9
HOXA1-201ENST00000343060 CFL2Q9Y281 166 aa9.42□□□□□ -0.9
HOXA1-201ENST00000343060 TIMM13Q9Y5L4 95 aaPredicted RBP9.42□□□□□ -0.9
HOXA1-201ENST00000343060 MYO16Q9Y6X6 1858 aa9.42□□□□□ -0.9
HOXA1-201ENST00000343060 GREB1Q4ZG55 1949 aa9.42□□□□□ -0.9
HOXA1-201ENST00000343060 CLCA1A8K7I4 914 aa9.42□□□□□ -0.9
HOXA1-201ENST00000343060 AP3D1O14617 1153 aa9.42□□□□□ -0.9
HOXA1-201ENST00000343060 NIPSNAP2O75323 286 aa9.42□□□□□ -0.9
HOXA1-201ENST00000343060 FABP3P05413 133 aa9.42□□□□□ -0.9
HOXA1-201ENST00000343060 CYP2A7P20853 494 aa9.42□□□□□ -0.9
HOXA1-201ENST00000343060 C21orf33P30042 268 aaPredicted RBP9.42□□□□□ -0.9
HOXA1-201ENST00000343060 TIE1P35590 1138 aa9.42□□□□□ -0.9
HOXA1-201ENST00000343060 GGT2P36268 569 aa9.42□□□□□ -0.9
HOXA1-201ENST00000343060 PGFP49763 221 aa9.42□□□□□ -0.9
HOXA1-201ENST00000343060 CLCN4P51793 760 aa9.42□□□□□ -0.9
HOXA1-201ENST00000343060 GALNT3Q14435 633 aa9.42□□□□□ -0.9
HOXA1-201ENST00000343060 IQCCQ4KMZ1 466 aa9.42□□□□□ -0.9
HOXA1-201ENST00000343060 USP39Q53GS9 565 aaKnown RBP9.42□□□□□ -0.9
HOXA1-201ENST00000343060 SNAP47Q5SQN1 464 aa9.42□□□□□ -0.9
HOXA1-201ENST00000343060 CACHD1Q5VU97 1274 aa9.42□□□□□ -0.9
HOXA1-201ENST00000343060 NRARPQ7Z6K4 114 aa9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms