RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 TULP3O75386 442 aa8.51□□□□□ -1.05
RTN3-202ENST00000339997 RBMXL2O75526 392 aaKnown RBP8.51□□□□□ -1.05
RTN3-202ENST00000339997 C22orf31O95567 290 aa8.51□□□□□ -1.05
RTN3-202ENST00000339997 FGF3P11487 239 aaPredicted RBP8.51□□□□□ -1.05
RTN3-202ENST00000339997 CCNCP24863 283 aa8.51□□□□□ -1.05
RTN3-202ENST00000339997 EIF2S3P41091 472 aaKnown RBP8.51□□□□□ -1.05
RTN3-202ENST00000339997 HADHBP55084 474 aaKnown RBP8.51□□□□□ -1.05
RTN3-202ENST00000339997 STXBP1P61764 594 aaKnown RBP8.51□□□□□ -1.05
RTN3-202ENST00000339997 SP2Q02086 613 aa8.51□□□□□ -1.05
RTN3-202ENST00000339997 MLLT1Q03111 559 aaPredicted RBP8.51□□□□□ -1.05
RTN3-202ENST00000339997 GK3PQ14409 553 aa8.51□□□□□ -1.05
RTN3-202ENST00000339997 FAM214AQ32MH5 1076 aa8.51□□□□□ -1.05
RTN3-202ENST00000339997 TMEM151AQ8N4L1 468 aa8.51□□□□□ -1.05
RTN3-202ENST00000339997 C17orf50Q8WW18 174 aa8.51□□□□□ -1.05
RTN3-202ENST00000339997 CLEC4DQ8WXI8 215 aa8.51□□□□□ -1.05
RTN3-202ENST00000339997 FXYD6Q9H0Q3 95 aa8.51□□□□□ -1.05
RTN3-202ENST00000339997 ADAP2Q9NPF8 381 aa8.51□□□□□ -1.05
RTN3-202ENST00000339997 HPF1Q9NWY4 346 aa8.51□□□□□ -1.05
RTN3-202ENST00000339997 PAQR5Q9NXK6 330 aaPredicted RBP8.51□□□□□ -1.05
RTN3-202ENST00000339997 FAM86C2PA6NEL3 165 aa8.51□□□□□ -1.05
RTN3-202ENST00000339997 MCIDASD6RGH6 385 aa8.51□□□□□ -1.05
RTN3-202ENST00000339997 ADAMDEC1O15204 470 aa8.51□□□□□ -1.05
RTN3-202ENST00000339997 ACSL4O60488 711 aa8.51□□□□□ -1.05
RTN3-202ENST00000339997 IMPDH1P20839 514 aa8.51□□□□□ -1.05
RTN3-202ENST00000339997 NT5EP21589 574 aa8.51□□□□□ -1.05
RTN3-202ENST00000339997 AHCYP23526 432 aa8.51□□□□□ -1.05
RTN3-202ENST00000339997 PRDX6P30041 224 aa8.51□□□□□ -1.05
RTN3-202ENST00000339997 CDH5P33151 784 aaPredicted RBP8.51□□□□□ -1.05
RTN3-202ENST00000339997 GNALP38405 381 aa8.51□□□□□ -1.05
RTN3-202ENST00000339997 PTPN9P43378 593 aa8.51□□□□□ -1.05
RTN3-202ENST00000339997 HERVK_113P63132 956 aa8.51□□□□□ -1.05
RTN3-202ENST00000339997 JAG1P78504 1218 aa8.51□□□□□ -1.05
RTN3-202ENST00000339997 SLC3A1Q07837 685 aa8.51□□□□□ -1.05
RTN3-202ENST00000339997 GRB7Q14451 532 aa8.51□□□□□ -1.05
RTN3-202ENST00000339997 SEMA3AQ14563 771 aa8.51□□□□□ -1.05
RTN3-202ENST00000339997 ZNHIT3Q15649 155 aaPredicted RBP8.51□□□□□ -1.05
RTN3-202ENST00000339997 IQCCQ4KMZ1 466 aa8.51□□□□□ -1.05
RTN3-202ENST00000339997 BRMS1LQ5PSV4 323 aa8.51□□□□□ -1.05
RTN3-202ENST00000339997 SLC35F1Q5T1Q4 408 aa8.51□□□□□ -1.05
RTN3-202ENST00000339997 SPATC1Q76KD6 591 aa8.51□□□□□ -1.05
RTN3-202ENST00000339997 ZDHHC14Q8IZN3 488 aa8.51□□□□□ -1.05
RTN3-202ENST00000339997 DRAXINQ8NBI3 349 aaPredicted RBP8.51□□□□□ -1.05
RTN3-202ENST00000339997 OR4K1Q8NGD4 311 aa8.51□□□□□ -1.05
RTN3-202ENST00000339997 ZNF563Q8TA94 476 aa8.51□□□□□ -1.05
RTN3-202ENST00000339997 DOK4Q8TEW6 326 aa8.51□□□□□ -1.05
RTN3-202ENST00000339997 TSEN15Q8WW01 171 aaKnown RBP8.51□□□□□ -1.05
RTN3-202ENST00000339997 DUSP26Q9BV47 211 aa8.51□□□□□ -1.05
RTN3-202ENST00000339997 ERVK-6Q9BXR3 956 aa8.51□□□□□ -1.05
RTN3-202ENST00000339997 ADAM7Q9H2U9 754 aa8.51□□□□□ -1.05
RTN3-202ENST00000339997 DSN1Q9H410 356 aa8.51□□□□□ -1.05
RTN3-202ENST00000339997 RPF2Q9H7B2 306 aaKnown RBP8.51□□□□□ -1.05
RTN3-202ENST00000339997 AASDHPPTQ9NRN7 309 aa8.51□□□□□ -1.05
RTN3-202ENST00000339997 GDAP2Q9NXN4 497 aa8.51□□□□□ -1.05
RTN3-202ENST00000339997 TBC1D14Q9P2M4 693 aa8.51□□□□□ -1.05
RTN3-202ENST00000339997 PADI3Q9ULW8 664 aa8.51□□□□□ -1.05
RTN3-202ENST00000339997 GRIP1Q9Y3R0 1128 aa8.51□□□□□ -1.05
RTN3-202ENST00000339997 ZNF142P52746 1687 aaPredicted RBP8.5□□□□□ -1.05
RTN3-202ENST00000339997 VIPP01282 170 aa8.5□□□□□ -1.05
RTN3-202ENST00000339997 GJA1P17302 382 aa8.5□□□□□ -1.05
RTN3-202ENST00000339997 GKP32189 559 aa8.5□□□□□ -1.05
RTN3-202ENST00000339997 CLCN2P51788 898 aa8.5□□□□□ -1.05
RTN3-202ENST00000339997 HERC3Q15034 1050 aa8.5□□□□□ -1.05
RTN3-202ENST00000339997 LRRC37A5PQ49AS3 106 aa8.5□□□□□ -1.05
RTN3-202ENST00000339997 GPR142Q7Z601 462 aa8.5□□□□□ -1.05
RTN3-202ENST00000339997 ARL14EPQ8N8R7 260 aaPredicted RBP8.5□□□□□ -1.05
RTN3-202ENST00000339997 PJA1Q8NG27 643 aa8.5□□□□□ -1.05
RTN3-202ENST00000339997 SLC38A4Q969I6 547 aa8.5□□□□□ -1.05
RTN3-202ENST00000339997 SLC45A3Q96JT2 553 aa8.5□□□□□ -1.05
RTN3-202ENST00000339997 PHOX2BQ99453 314 aa8.5□□□□□ -1.05
RTN3-202ENST00000339997 TMEM246Q9BRR3 403 aa8.5□□□□□ -1.05
RTN3-202ENST00000339997 MYO15AQ9UKN7 3530 aa8.5□□□□□ -1.05
RTN3-202ENST00000339997 MYO7AQ13402 2215 aa8.5□□□□□ -1.05
RTN3-202ENST00000339997 TMEM88BA6NKF7 163 aa8.5□□□□□ -1.05
RTN3-202ENST00000339997 NPHS1O60500 1241 aa8.5□□□□□ -1.05
RTN3-202ENST00000339997 BCAS2O75934 225 aaPredicted RBP8.5□□□□□ -1.05
RTN3-202ENST00000339997 TFPIP10646 304 aa8.5□□□□□ -1.05
RTN3-202ENST00000339997 BMXP51813 675 aa8.5□□□□□ -1.05
RTN3-202ENST00000339997 TSPAN5P62079 268 aa8.5□□□□□ -1.05
RTN3-202ENST00000339997 ERVK-8P63133 956 aa8.5□□□□□ -1.05
RTN3-202ENST00000339997 SLC25A11Q02978 314 aaKnown RBP8.5□□□□□ -1.05
RTN3-202ENST00000339997 ARMC10Q8N2F6 343 aa8.5□□□□□ -1.05
RTN3-202ENST00000339997 OR5K1Q8NHB7 308 aa8.5□□□□□ -1.05
RTN3-202ENST00000339997 MSANTD3Q96H12 275 aa8.5□□□□□ -1.05
RTN3-202ENST00000339997 CDKN2AIPNLQ96HQ2 116 aa8.5□□□□□ -1.05
RTN3-202ENST00000339997 TMEM39AQ9NV64 488 aa8.5□□□□□ -1.05
RTN3-202ENST00000339997 FBXW11Q9UKB1 542 aa8.5□□□□□ -1.05
RTN3-202ENST00000339997 FZD4Q9ULV1 537 aa8.5□□□□□ -1.05
RTN3-202ENST00000339997 INSIG1O15503 277 aa8.5□□□□□ -1.05
RTN3-202ENST00000339997 NUPL2O15504 423 aaKnown RBP8.5□□□□□ -1.05
RTN3-202ENST00000339997 SLC25A12O75746 678 aa8.5□□□□□ -1.05
RTN3-202ENST00000339997 ELNP15502 786 aa8.5□□□□□ -1.05
RTN3-202ENST00000339997 RPS3P23396 243 aaKnown RBP eCLIP8.5□□□□□ -1.051e-6■■■■□ 21.3
RTN3-202ENST00000339997 TIE1P35590 1138 aa8.5□□□□□ -1.05
RTN3-202ENST00000339997 DPYSL2Q16555 572 aa8.5□□□□□ -1.05
RTN3-202ENST00000339997 SWI5Q1ZZU3 235 aa8.5□□□□□ -1.05
RTN3-202ENST00000339997 TBRG1Q3YBR2 411 aa8.5□□□□□ -1.05
RTN3-202ENST00000339997 ZNF404Q494X3 552 aa8.5□□□□□ -1.05
RTN3-202ENST00000339997 IFI44LQ53G44 452 aa8.5□□□□□ -1.05
RTN3-202ENST00000339997 ERMP1Q7Z2K6 904 aa8.5□□□□□ -1.05
RTN3-202ENST00000339997 TMPRSS9Q7Z410 1059 aa8.5□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms