RNA–Protein interactions for RNA: ENST00000332345.10

LIMS1-201, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 1,235 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-201ENST00000332345 SMPDL3AQ92484 453 aa13.52□□□□□ -0.25
LIMS1-201ENST00000332345 ZUFSPQ96AP4 578 aa13.52□□□□□ -0.25
LIMS1-201ENST00000332345 ZNF501Q96CX3 271 aaPredicted RBP13.52□□□□□ -0.25
LIMS1-201ENST00000332345 PKP4Q99569 1192 aa13.52□□□□□ -0.25
LIMS1-201ENST00000332345 CPNE1Q99829 537 aa13.52□□□□□ -0.25
LIMS1-201ENST00000332345 KLHL25Q9H0H3 589 aa13.52□□□□□ -0.25
LIMS1-201ENST00000332345 RHOJQ9H4E5 214 aa13.52□□□□□ -0.25
LIMS1-201ENST00000332345 PARVBQ9HBI1 364 aa13.52□□□□□ -0.25
LIMS1-201ENST00000332345 SPTBP11277 2137 aa13.52□□□□□ -0.25
LIMS1-201ENST00000332345 KMT2BQ9UMN6 2715 aaPredicted RBP13.52□□□□□ -0.25
LIMS1-201ENST00000332345 PKD1L2Q7Z442 2459 aa13.51□□□□□ -0.25
LIMS1-201ENST00000332345 SNRNP200O75643 2136 aaKnown RBP13.51□□□□□ -0.25
LIMS1-201ENST00000332345 FAM95CA0A1B0GW59 222 aa13.51□□□□□ -0.25
LIMS1-201ENST00000332345 CXorf49A8MYA2 514 aaPredicted RBP13.51□□□□□ -0.25
LIMS1-201ENST00000332345 TARM1B6A8C7 271 aa13.51□□□□□ -0.25
LIMS1-201ENST00000332345 SLC16A5O15375 505 aa13.51□□□□□ -0.25
LIMS1-201ENST00000332345 PRICKLE3O43900 615 aaPredicted RBP13.51□□□□□ -0.25
LIMS1-201ENST00000332345 RAD1O60671 282 aa13.51□□□□□ -0.25
LIMS1-201ENST00000332345 KIAA0754O94854 1291 aa13.51□□□□□ -0.25
LIMS1-201ENST00000332345 SYF2O95926 243 aaKnown RBP13.51□□□□□ -0.25
LIMS1-201ENST00000332345 HIST1H2AGP0C0S8 130 aaPredicted RBP13.51□□□□□ -0.25
LIMS1-201ENST00000332345 HIST1H2ADP20671 130 aa13.51□□□□□ -0.25
LIMS1-201ENST00000332345 PEBP1P30086 187 aaKnown RBP13.51□□□□□ -0.25
LIMS1-201ENST00000332345 PHBP35232 272 aa13.51□□□□□ -0.25
LIMS1-201ENST00000332345 PNLIPRP1P54315 467 aa13.51□□□□□ -0.25
LIMS1-201ENST00000332345 ABHD18Q0P651 414 aa13.51□□□□□ -0.25
LIMS1-201ENST00000332345 EEF1AKMT2Q5JPI9 291 aaKnown RBP13.51□□□□□ -0.25
LIMS1-201ENST00000332345 GRTP1Q5TC63 336 aa13.51□□□□□ -0.25
LIMS1-201ENST00000332345 PWWP2BQ6NUJ5 590 aa13.51□□□□□ -0.25
LIMS1-201ENST00000332345 PIWIL4Q7Z3Z4 852 aaKnown RBP13.51□□□□□ -0.25
LIMS1-201ENST00000332345 TAX1BP1Q86VP1 789 aa13.51□□□□□ -0.25
LIMS1-201ENST00000332345 CTAGE3PQ8IX95 158 aa13.51□□□□□ -0.25
LIMS1-201ENST00000332345 IFT20Q8IY31 132 aa13.51□□□□□ -0.25
LIMS1-201ENST00000332345 NKAPQ8N5F7 415 aaKnown RBP13.51□□□□□ -0.25
LIMS1-201ENST00000332345 ZSCAN1Q8NBB4 408 aa13.51□□□□□ -0.25
LIMS1-201ENST00000332345 DENND1AQ8TEH3 1009 aa13.51□□□□□ -0.25
LIMS1-201ENST00000332345 LINGO1Q96FE5 620 aa13.51□□□□□ -0.25
LIMS1-201ENST00000332345 PDLIM5Q96HC4 596 aaKnown RBP13.51□□□□□ -0.25
LIMS1-201ENST00000332345 HIST1H2AHQ96KK5 128 aa13.51□□□□□ -0.25
LIMS1-201ENST00000332345 FMO2Q99518 471 aa13.51□□□□□ -0.25
LIMS1-201ENST00000332345 HIST1H2AJQ99878 128 aa13.51□□□□□ -0.25
LIMS1-201ENST00000332345 H2AFJQ9BTM1 129 aa13.51□□□□□ -0.25
LIMS1-201ENST00000332345 EFHD1Q9BUP0 239 aa13.51□□□□□ -0.25
LIMS1-201ENST00000332345 SLC12A9Q9BXP2 914 aa13.51□□□□□ -0.25
LIMS1-201ENST00000332345 TRIM54Q9BYV2 358 aa13.51□□□□□ -0.25
LIMS1-201ENST00000332345 SMYD2Q9NRG4 433 aa13.51□□□□□ -0.25
LIMS1-201ENST00000332345 SEC16AO15027 2179 aa13.5□□□□□ -0.25
LIMS1-201ENST00000332345 PABPN1LA6NDY0 278 aaKnown RBP13.5□□□□□ -0.25
LIMS1-201ENST00000332345 TMEM150CB9EJG8 249 aa13.5□□□□□ -0.25
LIMS1-201ENST00000332345 PIAS1O75925 651 aa13.5□□□□□ -0.25
LIMS1-201ENST00000332345 DLGAP3O95886 979 aa13.5□□□□□ -0.25
LIMS1-201ENST00000332345 SLC16A8O95907 504 aa13.5□□□□□ -0.25
LIMS1-201ENST00000332345 ERGP11308 486 aa13.5□□□□□ -0.25
LIMS1-201ENST00000332345 RPA3P35244 121 aaPredicted RBP13.5□□□□□ -0.25
LIMS1-201ENST00000332345 SPRP35270 261 aaPredicted RBP13.5□□□□□ -0.25
LIMS1-201ENST00000332345 GP5P40197 560 aa13.5□□□□□ -0.25
LIMS1-201ENST00000332345 POU4F1Q01851 419 aa13.5□□□□□ -0.25
LIMS1-201ENST00000332345 VAC14Q08AM6 782 aa13.5□□□□□ -0.25
LIMS1-201ENST00000332345 SP140Q13342 867 aa13.5□□□□□ -0.25
LIMS1-201ENST00000332345 NAB1Q13506 487 aa13.5□□□□□ -0.25
LIMS1-201ENST00000332345 NAA25Q14CX7 972 aa13.5□□□□□ -0.25
LIMS1-201ENST00000332345 KBTBD12Q3ZCT8 623 aa13.5□□□□□ -0.25
LIMS1-201ENST00000332345 FIGLAQ6QHK4 219 aa13.5□□□□□ -0.25
LIMS1-201ENST00000332345 CDHR3Q6ZTQ4 885 aa13.5□□□□□ -0.25
LIMS1-201ENST00000332345 TIPARPQ7Z3E1 657 aaKnown RBP13.5□□□□□ -0.25
LIMS1-201ENST00000332345 RELL1Q8IUW5 271 aa13.5□□□□□ -0.25
LIMS1-201ENST00000332345 TMEM126BQ8IUX1 230 aa13.5□□□□□ -0.25
LIMS1-201ENST00000332345 SYTL1Q8IYJ3 562 aa13.5□□□□□ -0.25
LIMS1-201ENST00000332345 GPR135Q8IZ08 494 aa13.5□□□□□ -0.25
LIMS1-201ENST00000332345 FBF1Q8TES7 1133 aa13.5□□□□□ -0.25
LIMS1-201ENST00000332345 KIAA1143Q96AT1 154 aaPredicted RBP13.5□□□□□ -0.25
LIMS1-201ENST00000332345 TSPAN17Q96FV3 270 aa13.5□□□□□ -0.25
LIMS1-201ENST00000332345 CCDC138Q96M89 665 aa13.5□□□□□ -0.25
LIMS1-201ENST00000332345 OLFM1Q99784 485 aa13.5□□□□□ -0.25
LIMS1-201ENST00000332345 MCMBPQ9BTE3 642 aa13.5□□□□□ -0.25
LIMS1-201ENST00000332345 POPDC3Q9HBV1 291 aa13.5□□□□□ -0.25
LIMS1-201ENST00000332345 PADI1Q9ULC6 663 aa13.5□□□□□ -0.25
LIMS1-201ENST00000332345 CFAP47Q6ZTR5 3102 aa13.49□□□□□ -0.25
LIMS1-201ENST00000332345 PTPRQQ9UMZ3 2332 aa13.49□□□□□ -0.25
LIMS1-201ENST00000332345 KRT87PA6NCN2 255 aa13.49□□□□□ -0.25
LIMS1-201ENST00000332345 SCRG1O75711 98 aa13.49□□□□□ -0.25
LIMS1-201ENST00000332345 KRT37O76014 449 aa13.49□□□□□ -0.25
LIMS1-201ENST00000332345 ZNF28P17035 718 aa13.49□□□□□ -0.25
LIMS1-201ENST00000332345 MAGP20916 626 aa13.49□□□□□ -0.25
LIMS1-201ENST00000332345 CMPK1P30085 196 aa13.49□□□□□ -0.25
LIMS1-201ENST00000332345 ITGA1P56199 1179 aa13.49□□□□□ -0.25
LIMS1-201ENST00000332345 TAS2R39P59534 338 aa13.49□□□□□ -0.25
LIMS1-201ENST00000332345 CXADRP78310 365 aa13.49□□□□□ -0.25
LIMS1-201ENST00000332345 TSTA3Q13630 321 aaPredicted RBP13.49□□□□□ -0.25
LIMS1-201ENST00000332345 FASTKQ14296 549 aaKnown RBP13.49□□□□□ -0.25
LIMS1-201ENST00000332345 USP10Q14694 798 aaKnown RBP13.49□□□□□ -0.25
LIMS1-201ENST00000332345 ZIC1Q15915 447 aa13.49□□□□□ -0.25
LIMS1-201ENST00000332345 ZC3H12BQ5HYM0 836 aaKnown RBP13.49□□□□□ -0.25
LIMS1-201ENST00000332345 KIAA1614Q5VZ46 1190 aa13.49□□□□□ -0.25
LIMS1-201ENST00000332345 GPR155Q7Z3F1 870 aa13.49□□□□□ -0.25
LIMS1-201ENST00000332345 DNAJC22Q8N4W6 341 aa13.49□□□□□ -0.25
LIMS1-201ENST00000332345 PPM1NQ8N819 430 aa13.49□□□□□ -0.25
LIMS1-201ENST00000332345 GALNT6Q8NCL4 622 aa13.49□□□□□ -0.25
LIMS1-201ENST00000332345 OR2A1Q8NGT9 310 aa13.49□□□□□ -0.25
LIMS1-201ENST00000332345 ZNF480Q8WV37 535 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms