RNA–Protein interactions for RNA: ENST00000324288.12

CIITA-201, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CIITA, Length 11,952 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-201ENST00000324288 LAPTM4AQ15012 233 aa7.75□□□□□ -1.17
CIITA-201ENST00000324288 PHF13Q86YI8 300 aaPredicted RBP7.75□□□□□ -1.17
CIITA-201ENST00000324288 GPALPP1Q8IXQ4 340 aa7.75□□□□□ -1.17
CIITA-201ENST00000324288 OR8K3Q8NH51 312 aa7.75□□□□□ -1.17
CIITA-201ENST00000324288 OR5K1Q8NHB7 308 aa7.75□□□□□ -1.17
CIITA-201ENST00000324288 TTYH2Q9BSA4 534 aa7.75□□□□□ -1.17
CIITA-201ENST00000324288 GATA5Q9BWX5 397 aaPredicted RBP7.75□□□□□ -1.17
CIITA-201ENST00000324288 SMURF1Q9HCE7 757 aa7.75□□□□□ -1.17
CIITA-201ENST00000324288 C14orf119Q9NWQ9 140 aa7.75□□□□□ -1.17
CIITA-201ENST00000324288 ERVK-11Q9UQG0 969 aa7.75□□□□□ -1.17
CIITA-201ENST00000324288 PCNX2A6NKB5 2137 aa7.75□□□□□ -1.17
CIITA-201ENST00000324288 CCDC85CA6NKD9 419 aa7.75□□□□□ -1.17
CIITA-201ENST00000324288 GCATO75600 419 aa7.75□□□□□ -1.17
CIITA-201ENST00000324288 GLUD1P00367 558 aa7.75□□□□□ -1.17
CIITA-201ENST00000324288 ZNF20P17024 532 aa7.75□□□□□ -1.17
CIITA-201ENST00000324288 BRCC3P46736 316 aa7.75□□□□□ -1.17
CIITA-201ENST00000324288 OR3A3P47888 321 aa7.75□□□□□ -1.17
CIITA-201ENST00000324288 OR3A2P47893 321 aa7.75□□□□□ -1.17
CIITA-201ENST00000324288 RHEBQ15382 184 aa7.75□□□□□ -1.17
CIITA-201ENST00000324288 VMACQ2NL98 169 aa7.75□□□□□ -1.17
CIITA-201ENST00000324288 ZNF648Q5T619 568 aaPredicted RBP7.75□□□□□ -1.17
CIITA-201ENST00000324288 CFAP77Q6ZQR2 320 aa7.75□□□□□ -1.17
CIITA-201ENST00000324288 WDR18Q9BV38 432 aa7.75□□□□□ -1.17
CIITA-201ENST00000324288 EVLQ9UI08 416 aaPredicted RBP7.75□□□□□ -1.17
CIITA-201ENST00000324288 POFUT2Q9Y2G5 429 aa7.75□□□□□ -1.17
CIITA-201ENST00000324288 CNTNAP1P78357 1384 aa7.75□□□□□ -1.17
CIITA-201ENST00000324288 SLURP2P0DP57 97 aa7.75□□□□□ -1.17
CIITA-201ENST00000324288 CORO1AP31146 461 aaKnown RBP7.75□□□□□ -1.17
CIITA-201ENST00000324288 LARS2Q15031 903 aaKnown RBP7.75□□□□□ -1.17
CIITA-201ENST00000324288 SVOPLQ8N434 492 aa7.75□□□□□ -1.17
CIITA-201ENST00000324288 ANKRD52Q8NB46 1076 aa7.75□□□□□ -1.17
CIITA-201ENST00000324288 RNF121Q9H920 327 aa7.75□□□□□ -1.17
CIITA-201ENST00000324288 TCAF2A6NFQ2 919 aa7.75□□□□□ -1.17
CIITA-201ENST00000324288 CH25HO95992 272 aa7.75□□□□□ -1.17
CIITA-201ENST00000324288 CDH1P12830 882 aa7.75□□□□□ -1.17
CIITA-201ENST00000324288 KIR3DL1P43629 444 aa7.75□□□□□ -1.17
CIITA-201ENST00000324288 TMEM161BQ8NDZ6 487 aa7.75□□□□□ -1.17
CIITA-201ENST00000324288 METTL21AQ8WXB1 218 aa7.75□□□□□ -1.17
CIITA-201ENST00000324288 POLR2J2Q9GZM3 115 aaKnown RBP7.75□□□□□ -1.17
CIITA-201ENST00000324288 ZFC3H1O60293 1989 aaKnown RBP7.75□□□□□ -1.17
CIITA-201ENST00000324288 WTIPA6NIX2 430 aaPredicted RBP7.75□□□□□ -1.17
CIITA-201ENST00000324288 PITPNM1O00562 1244 aa7.75□□□□□ -1.17
CIITA-201ENST00000324288 EIF1AYO14602 144 aaKnown RBP7.75□□□□□ -1.17
CIITA-201ENST00000324288 FSCN2O14926 492 aa7.75□□□□□ -1.17
CIITA-201ENST00000324288 INPPL1O15357 1258 aa7.75□□□□□ -1.17
CIITA-201ENST00000324288 C1RP00736 705 aa7.75□□□□□ -1.17
CIITA-201ENST00000324288 PUM1Q14671 1186 aaKnown RBP eCLIP7.75□□□□□ -1.17
CIITA-201ENST00000324288 ZPBP2Q6X784 338 aa7.75□□□□□ -1.17
CIITA-201ENST00000324288 PTF1AQ7RTS3 328 aa7.75□□□□□ -1.17
CIITA-201ENST00000324288 C10orf82Q8WW14 230 aa7.75□□□□□ -1.17
CIITA-201ENST00000324288 RNF6Q9Y252 685 aa7.75□□□□□ -1.17
CIITA-201ENST00000324288 FCF1Q9Y324 198 aaKnown RBP7.75□□□□□ -1.17
CIITA-201ENST00000324288 ARFGEF3Q5TH69 2177 aa7.75□□□□□ -1.17
CIITA-201ENST00000324288 TRIP12Q14669 1992 aaPredicted RBP7.75□□□□□ -1.17
CIITA-201ENST00000324288 CDK5RAP2Q96SN8 1893 aa7.75□□□□□ -1.17
CIITA-201ENST00000324288 CD163L1Q9NR16 1453 aa7.75□□□□□ -1.17
CIITA-201ENST00000324288 IRF6O14896 467 aa7.75□□□□□ -1.17
CIITA-201ENST00000324288 AKAP8O43823 692 aaKnown RBP7.75□□□□□ -1.17
CIITA-201ENST00000324288 PRMT3O60678 531 aa7.75□□□□□ -1.17
CIITA-201ENST00000324288 NMBRP28336 390 aa7.75□□□□□ -1.17
CIITA-201ENST00000324288 EIF1AXP47813 144 aaKnown RBP7.75□□□□□ -1.17
CIITA-201ENST00000324288 CAPZA1P52907 286 aa7.75□□□□□ -1.17
CIITA-201ENST00000324288 FXYD6P3P58550 94 aa7.75□□□□□ -1.17
CIITA-201ENST00000324288 GBE1Q04446 702 aa7.75□□□□□ -1.17
CIITA-201ENST00000324288 GRM3Q14832 879 aa7.75□□□□□ -1.17
CIITA-201ENST00000324288 CHST9Q7L1S5 443 aa7.75□□□□□ -1.17
CIITA-201ENST00000324288 IRF2BP2Q7Z5L9 587 aa7.75□□□□□ -1.17
CIITA-201ENST00000324288 FAM71AQ8IYT1 594 aa7.75□□□□□ -1.17
CIITA-201ENST00000324288 FCGR1BQ92637 280 aa7.75□□□□□ -1.17
CIITA-201ENST00000324288 PEX13Q92968 403 aa7.75□□□□□ -1.17
CIITA-201ENST00000324288 TLE6Q9H808 572 aa7.75□□□□□ -1.17
CIITA-201ENST00000324288 M0QX08 132 aa7.75□□□□□ -1.17
CIITA-201ENST00000324288 SLC31A1O15431 190 aa7.75□□□□□ -1.17
CIITA-201ENST00000324288 PLA2G16P53816 162 aa7.75□□□□□ -1.17
CIITA-201ENST00000324288 NT5DC1Q5TFE4 455 aa7.75□□□□□ -1.17
CIITA-201ENST00000324288 TMEM199Q8N511 208 aa7.75□□□□□ -1.17
CIITA-201ENST00000324288 CHRAC1Q9NRG0 131 aa7.75□□□□□ -1.17
CIITA-201ENST00000324288 XKP51811 444 aa7.75□□□□□ -1.17
CIITA-201ENST00000324288 LIMK2P53671 638 aa7.75□□□□□ -1.17
CIITA-201ENST00000324288 GNG2P59768 71 aa7.75□□□□□ -1.17
CIITA-201ENST00000324288 HNRNPA0Q13151 305 aaKnown RBP7.75□□□□□ -1.17
CIITA-201ENST00000324288 ANKDD1AQ495B1 522 aa7.75□□□□□ -1.17
CIITA-201ENST00000324288 CHRDL2Q6WN34 429 aa7.75□□□□□ -1.17
CIITA-201ENST00000324288 PYROXD2Q8N2H3 581 aa7.75□□□□□ -1.17
CIITA-201ENST00000324288 PKP4Q99569 1192 aa7.75□□□□□ -1.17
CIITA-201ENST00000324288 ADAM7Q9H2U9 754 aa7.75□□□□□ -1.17
CIITA-201ENST00000324288 KCND1Q9NSA2 647 aa7.75□□□□□ -1.17
CIITA-201ENST00000324288 CEP170BQ9Y4F5 1589 aaPredicted RBP7.75□□□□□ -1.17
CIITA-201ENST00000324288 PIKFYVEQ9Y2I7 2098 aa7.75□□□□□ -1.17
CIITA-201ENST00000324288 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP7.75□□□□□ -1.17
CIITA-201ENST00000324288 TCRBV5S4A2TA0A5A2 114 aa7.75□□□□□ -1.17
CIITA-201ENST00000324288 ENTPD6O75354 484 aa7.75□□□□□ -1.17
CIITA-201ENST00000324288 LUMP51884 338 aaPredicted RBP7.75□□□□□ -1.17
CIITA-201ENST00000324288 C1orf186Q6ZWK4 172 aa7.75□□□□□ -1.17
CIITA-201ENST00000324288 TMC8Q8IU68 726 aa7.75□□□□□ -1.17
CIITA-201ENST00000324288 THAP6Q8TBB0 222 aa7.75□□□□□ -1.17
CIITA-201ENST00000324288 LCN9Q8WX39 176 aa7.75□□□□□ -1.17
CIITA-201ENST00000324288 MTERF1Q99551 399 aaKnown RBP7.75□□□□□ -1.17
CIITA-201ENST00000324288 DUSP16Q9BY84 665 aa7.75□□□□□ -1.17
CIITA-201ENST00000324288 IL1RAPQ9NPH3 570 aa7.75□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 66.5 ms