RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 TNNI3P19429 210 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 CD79BP40259 229 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 NDST2P52849 883 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 CDH13P55290 713 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 RAB4BP61018 213 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 RPS3AP61247 264 aaKnown RBP6.28□□□□□ -1.4
VPS35-201ENST00000299138 TSPAN5P62079 268 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 ADARB1P78563 741 aaKnown RBP6.28□□□□□ -1.4
VPS35-201ENST00000299138 GRM3Q14832 879 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 PKDCCQ504Y2 493 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 BTBD8Q5XKL5 378 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 ZNF425Q6IV72 752 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 BLOC1S3Q6QNY0 202 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 SLC30A10Q6XR72 485 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 LBX2Q6XYB7 198 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 LYSMD3Q7Z3D4 306 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 VTCN1Q7Z7D3 282 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 GALNT5Q7Z7M9 940 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 OR52L1Q8NGH7 329 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 SPPL2BQ8TCT7 592 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 HDAC10Q969S8 669 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 REPS1Q96D71 796 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 LURAP1Q96LR2 239 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 IL12RB2Q99665 862 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 C11orf84Q9BUA3 381 aaPredicted RBP6.28□□□□□ -1.4
VPS35-201ENST00000299138 MUC3BQ9H195 1237 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 ZNF282Q9UDV7 671 aaPredicted RBP6.28□□□□□ -1.4
VPS35-201ENST00000299138 SPACA6W5XKT8 324 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 MYH1P12882 1939 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 NUAK1O60285 661 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 ZNF254O75437 659 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 IFNA2P01563 188 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 M6PRP20645 277 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 CSHL1Q14406 222 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 RAB39AQ14964 217 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 RD3Q7Z3Z2 195 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 ZC3H7AQ8IWR0 971 aaKnown RBP6.28□□□□□ -1.4
VPS35-201ENST00000299138 PCSK9Q8NBP7 692 aaKnown RBP6.28□□□□□ -1.4
VPS35-201ENST00000299138 OR2L8Q8NGY9 312 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 BRSK1Q8TDC3 778 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 KCTD15Q96SI1 283 aaPredicted RBP6.28□□□□□ -1.4
VPS35-201ENST00000299138 CNPPD1Q9BV87 410 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 RNF181Q9P0P0 153 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 CA5BQ9Y2D0 317 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 LCHNA4D1U4 455 aa6.27□□□□□ -1.41
VPS35-201ENST00000299138 CACNG3O60359 315 aa6.27□□□□□ -1.41
VPS35-201ENST00000299138 BANF1O75531 89 aa6.27□□□□□ -1.41
VPS35-201ENST00000299138 OTCP00480 354 aa6.27□□□□□ -1.41
VPS35-201ENST00000299138 HIST1H2ABP04908 130 aa6.27□□□□□ -1.41
VPS35-201ENST00000299138 KCNE1P15382 129 aa6.27□□□□□ -1.41
VPS35-201ENST00000299138 FUT4P22083 530 aa6.27□□□□□ -1.41
VPS35-201ENST00000299138 RPL4P36578 427 aaKnown RBP6.27□□□□□ -1.41
VPS35-201ENST00000299138 UGT2B15P54855 530 aa6.27□□□□□ -1.41
VPS35-201ENST00000299138 LIPEQ05469 1076 aa6.27□□□□□ -1.41
VPS35-201ENST00000299138 PRKCDQ05655 676 aa6.27□□□□□ -1.41
VPS35-201ENST00000299138 TECRLQ5HYJ1 363 aa6.27□□□□□ -1.41
VPS35-201ENST00000299138 C6orf141Q5SZD1 244 aa6.27□□□□□ -1.41
VPS35-201ENST00000299138 HIST3H2AQ7L7L0 130 aa6.27□□□□□ -1.41
VPS35-201ENST00000299138 FAM126BQ8IXS8 530 aa6.27□□□□□ -1.41
VPS35-201ENST00000299138 OR2T12Q8NG77 320 aa6.27□□□□□ -1.41
VPS35-201ENST00000299138 ASB15Q8WXK1 588 aa6.27□□□□□ -1.41
VPS35-201ENST00000299138 HIST1H2ACQ93077 130 aa6.27□□□□□ -1.41
VPS35-201ENST00000299138 MED8Q96G25 268 aa6.27□□□□□ -1.41
VPS35-201ENST00000299138 ZNF668Q96K58 619 aaPredicted RBP6.27□□□□□ -1.41
VPS35-201ENST00000299138 KLHL15Q96M94 604 aa6.27□□□□□ -1.41
VPS35-201ENST00000299138 SLC38A2Q96QD8 506 aa6.27□□□□□ -1.41
VPS35-201ENST00000299138 TMEM209Q96SK2 561 aa6.27□□□□□ -1.41
VPS35-201ENST00000299138 GMLQ99445 158 aa6.27□□□□□ -1.41
VPS35-201ENST00000299138 GON7Q9BXV9 100 aa6.27□□□□□ -1.41
VPS35-201ENST00000299138 TGIF2Q9GZN2 237 aa6.27□□□□□ -1.41
VPS35-201ENST00000299138 EIF5A2Q9GZV4 153 aaKnown RBP6.27□□□□□ -1.41
VPS35-201ENST00000299138 HSFX1Q9UBD0 423 aa6.27□□□□□ -1.41
VPS35-201ENST00000299138 A8MVJ9 347 aa6.27□□□□□ -1.41
VPS35-201ENST00000299138 LACTBL1A8MY62 500 aa6.27□□□□□ -1.41
VPS35-201ENST00000299138 M0QYT0 321 aa6.27□□□□□ -1.41
VPS35-201ENST00000299138 IRF6O14896 467 aa6.27□□□□□ -1.41
VPS35-201ENST00000299138 MAGEB3O15480 346 aa6.27□□□□□ -1.41
VPS35-201ENST00000299138 PRSS23O95084 383 aa6.27□□□□□ -1.41
VPS35-201ENST00000299138 ANXA8P13928 327 aa6.27□□□□□ -1.41
VPS35-201ENST00000299138 HK1P19367 917 aa6.27□□□□□ -1.41
VPS35-201ENST00000299138 FPR1P21462 350 aa6.27□□□□□ -1.41
VPS35-201ENST00000299138 RPL9P32969 192 aaKnown RBP6.27□□□□□ -1.41
VPS35-201ENST00000299138 RPS5P46782 204 aaKnown RBP6.27□□□□□ -1.41
VPS35-201ENST00000299138 SCNN1GP51170 649 aa6.27□□□□□ -1.41
VPS35-201ENST00000299138 DYRK1AQ13627 763 aa6.27□□□□□ -1.41
VPS35-201ENST00000299138 WSCD2Q2TBF2 565 aa6.27□□□□□ -1.41
VPS35-201ENST00000299138 PHACTR4Q8IZ21 702 aa6.27□□□□□ -1.41
VPS35-201ENST00000299138 FCRL4Q96PJ5 515 aa6.27□□□□□ -1.41
VPS35-201ENST00000299138 UPB1Q9UBR1 384 aa6.27□□□□□ -1.41
VPS35-201ENST00000299138 ANGPT4Q9Y264 503 aa6.27□□□□□ -1.41
VPS35-201ENST00000299138 PCDHB1Q9Y5F3 818 aa6.27□□□□□ -1.41
VPS35-201ENST00000299138 OR6C65A6NJZ3 312 aa6.27□□□□□ -1.41
VPS35-201ENST00000299138 A8MT66 165 aa6.27□□□□□ -1.41
VPS35-201ENST00000299138 CST1P01037 141 aa6.27□□□□□ -1.41
VPS35-201ENST00000299138 CHRNA1P02708 482 aa6.27□□□□□ -1.41
VPS35-201ENST00000299138 JUNP05412 331 aaKnown RBP6.27□□□□□ -1.41
VPS35-201ENST00000299138 ERVK-10P10266 1014 aa6.27□□□□□ -1.41
VPS35-201ENST00000299138 IRF1P10914 325 aa6.27□□□□□ -1.41
VPS35-201ENST00000299138 PGAM2P15259 253 aa6.27□□□□□ -1.41
VPS35-201ENST00000299138 IL4RP24394 825 aa6.27□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms