RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 PCDHGA3Q9Y5H0 932 aa15.02■□□□□ -0
SHH-201ENST00000297261 ADAMDEC1O15204 470 aa15.02■□□□□ -0
SHH-201ENST00000297261 GRID2O43424 1007 aa15.02■□□□□ -0
SHH-201ENST00000297261 SDC2P34741 201 aa15.02■□□□□ -0
SHH-201ENST00000297261 NR4A2P43354 598 aa15.02■□□□□ -0
SHH-201ENST00000297261 PAFAH1B3Q15102 231 aaKnown RBP15.02■□□□□ -0
SHH-201ENST00000297261 ATP6AP1Q15904 470 aa15.02■□□□□ -0
SHH-201ENST00000297261 TBRG1Q3YBR2 411 aa15.02■□□□□ -0
SHH-201ENST00000297261 IKBIPQ70UQ0 350 aa15.02■□□□□ -0
SHH-201ENST00000297261 CEP97Q8IW35 865 aa15.02■□□□□ -0
SHH-201ENST00000297261 RBFAQ8N0V3 343 aa15.02■□□□□ -0
SHH-201ENST00000297261 GRIN3AQ8TCU5 1115 aa15.02■□□□□ -0
SHH-201ENST00000297261 NSUN5Q96P11 429 aaKnown RBP15.02■□□□□ -0
SHH-201ENST00000297261 CYP2S1Q96SQ9 504 aa15.02■□□□□ -0
SHH-201ENST00000297261 CIPCQ9C0C6 399 aa15.02■□□□□ -0
SHH-201ENST00000297261 SMOC2Q9H3U7 446 aa15.02■□□□□ -0
SHH-201ENST00000297261 PAQR5Q9NXK6 330 aaPredicted RBP15.02■□□□□ -0
SHH-201ENST00000297261 KCTD3Q9Y597 815 aa15.02■□□□□ -0
SHH-201ENST00000297261 PRAMEF33A0A0G2JMD5 474 aa15.02□□□□□ -0.01
SHH-201ENST00000297261 A0A1W2PQ67 120 aa15.02□□□□□ -0.01
SHH-201ENST00000297261 FAM172BPA6NC97 362 aa15.02□□□□□ -0.01
SHH-201ENST00000297261 H0YAE9 185 aa15.02□□□□□ -0.01
SHH-201ENST00000297261 NME4O00746 187 aa15.02□□□□□ -0.01
SHH-201ENST00000297261 ORC5O43913 435 aa15.02□□□□□ -0.01
SHH-201ENST00000297261 PRAMEF10O60809 474 aa15.02□□□□□ -0.01
SHH-201ENST00000297261 NR2F1P10589 423 aa15.02□□□□□ -0.01
SHH-201ENST00000297261 TXNL4AP83876 142 aaKnown RBP15.02□□□□□ -0.01
SHH-201ENST00000297261 CRTC2Q53ET0 693 aaPredicted RBP15.02□□□□□ -0.01
SHH-201ENST00000297261 BORAQ6PGQ7 559 aa15.02□□□□□ -0.01
SHH-201ENST00000297261 LILRA2Q8N149 483 aa15.02□□□□□ -0.01
SHH-201ENST00000297261 KDM1BQ8NB78 822 aa15.02□□□□□ -0.01
SHH-201ENST00000297261 OR4A15Q8NGL6 344 aa15.02□□□□□ -0.01
SHH-201ENST00000297261 SLC38A2Q96QD8 506 aa15.02□□□□□ -0.01
SHH-201ENST00000297261 SLC22A4Q9H015 551 aa15.02□□□□□ -0.01
SHH-201ENST00000297261 KLHL31Q9H511 634 aa15.02□□□□□ -0.01
SHH-201ENST00000297261 TFB2MQ9H5Q4 396 aaKnown RBP15.02□□□□□ -0.01
SHH-201ENST00000297261 FKBPLQ9UIM3 349 aa15.02□□□□□ -0.01
SHH-201ENST00000297261 PCDHGA7Q9Y5G6 932 aa15.02□□□□□ -0.01
SHH-201ENST00000297261 TCRBV5S1A1TA0A578 114 aa15.02□□□□□ -0.01
SHH-201ENST00000297261 FADS2P1A8MWK0 482 aa15.02□□□□□ -0.01
SHH-201ENST00000297261 CITO14578 2027 aa15.02□□□□□ -0.01
SHH-201ENST00000297261 RFPL2O75678 378 aa15.02□□□□□ -0.01
SHH-201ENST00000297261 CXCL14O95715 111 aa15.02□□□□□ -0.01
SHH-201ENST00000297261 BMP2P12643 396 aa15.02□□□□□ -0.01
SHH-201ENST00000297261 CTNNB1P35222 781 aa15.02□□□□□ -0.01
SHH-201ENST00000297261 IFNGR2P38484 337 aa15.02□□□□□ -0.01
SHH-201ENST00000297261 HCAR3P49019 387 aa15.02□□□□□ -0.01
SHH-201ENST00000297261 NIPAL4Q0D2K0 466 aa15.02□□□□□ -0.01
SHH-201ENST00000297261 TP53INP2Q8IXH6 220 aa15.02□□□□□ -0.01
SHH-201ENST00000297261 PHACTR4Q8IZ21 702 aa15.02□□□□□ -0.01
SHH-201ENST00000297261 CDK20Q8IZL9 346 aa15.02□□□□□ -0.01
SHH-201ENST00000297261 OR7D4Q8NG98 312 aa15.02□□□□□ -0.01
SHH-201ENST00000297261 ZNF597Q96LX8 424 aa15.02□□□□□ -0.01
SHH-201ENST00000297261 TTYH2Q9BSA4 534 aa15.02□□□□□ -0.01
SHH-201ENST00000297261 INTS7Q9NVH2 962 aaKnown RBP15.02□□□□□ -0.01
SHH-201ENST00000297261 HS3ST4Q9Y661 456 aa15.02□□□□□ -0.01
SHH-201ENST00000297261 PAPPA2Q9BXP8 1791 aa15.01□□□□□ -0.01
SHH-201ENST00000297261 G3V2L1 256 aa15.01□□□□□ -0.01
SHH-201ENST00000297261 SLC30A4O14863 429 aa15.01□□□□□ -0.01
SHH-201ENST00000297261 ACSL4O60488 711 aa15.01□□□□□ -0.01
SHH-201ENST00000297261 GNG2P59768 71 aa15.01□□□□□ -0.01
SHH-201ENST00000297261 PFKPQ01813 784 aa15.01□□□□□ -0.01
SHH-201ENST00000297261 FOXM1Q08050 763 aa15.01□□□□□ -0.01
SHH-201ENST00000297261 SUZ12Q15022 739 aaKnown RBP15.01□□□□□ -0.01
SHH-201ENST00000297261 SPANXN4Q5MJ08 99 aa15.01□□□□□ -0.01
SHH-201ENST00000297261 UBE2R2Q712K3 238 aaPredicted RBP15.01□□□□□ -0.01
SHH-201ENST00000297261 PNPLA1Q8N8W4 532 aa15.01□□□□□ -0.01
SHH-201ENST00000297261 AUTS2Q8WXX7 1259 aa15.01□□□□□ -0.01
SHH-201ENST00000297261 FNDC11Q9BVV2 318 aa15.01□□□□□ -0.01
SHH-201ENST00000297261 C12orf4Q9NQ89 552 aa15.01□□□□□ -0.01
SHH-201ENST00000297261 CORO2BQ9UQ03 480 aa15.01□□□□□ -0.01
SHH-201ENST00000297261 MAP4K5Q9Y4K4 846 aa15.01□□□□□ -0.01
SHH-201ENST00000297261 DOCK5Q9H7D0 1870 aa15.01□□□□□ -0.01
SHH-201ENST00000297261 MTMR11A4FU01 709 aa15.01□□□□□ -0.01
SHH-201ENST00000297261 LRRC14BA6NHZ5 514 aa15.01□□□□□ -0.01
SHH-201ENST00000297261 BHMG1C9JSJ3 638 aaPredicted RBP15.01□□□□□ -0.01
SHH-201ENST00000297261 BCAS1O75363 584 aaPredicted RBP15.01□□□□□ -0.01
SHH-201ENST00000297261 CLDN9O95484 217 aa15.01□□□□□ -0.01
SHH-201ENST00000297261 MT-ND2P03891 347 aa15.01□□□□□ -0.01
SHH-201ENST00000297261 TCF3P15923 654 aa15.01□□□□□ -0.01
SHH-201ENST00000297261 PPIBP23284 216 aaKnown RBP15.01□□□□□ -0.01
SHH-201ENST00000297261 TUBA1BP68363 451 aa15.01□□□□□ -0.01
SHH-201ENST00000297261 DSC3Q14574 896 aa15.01□□□□□ -0.01
SHH-201ENST00000297261 PKDCCQ504Y2 493 aa15.01□□□□□ -0.01
SHH-201ENST00000297261 TUBA1AQ71U36 451 aa15.01□□□□□ -0.01
SHH-201ENST00000297261 OLIG1Q8TAK6 271 aa15.01□□□□□ -0.01
SHH-201ENST00000297261 C8orf48Q96LL4 319 aa15.01□□□□□ -0.01
SHH-201ENST00000297261 ANKRA2Q9H9E1 313 aa15.01□□□□□ -0.01
SHH-201ENST00000297261 SCML2Q9UQR0 700 aa15.01□□□□□ -0.01
SHH-201ENST00000297261 CREG1O75629 220 aa15.01□□□□□ -0.01
SHH-201ENST00000297261 ADH1AP07327 375 aa15.01□□□□□ -0.01
SHH-201ENST00000297261 GRIA2P42262 883 aa15.01□□□□□ -0.01
SHH-201ENST00000297261 OR4D2P58180 307 aa15.01□□□□□ -0.01
SHH-201ENST00000297261 SLC10A7Q0GE19 358 aa15.01□□□□□ -0.01
SHH-201ENST00000297261 CLLU1OSQ5K130 101 aa15.01□□□□□ -0.01
SHH-201ENST00000297261 PLEKHG7Q6ZR37 379 aa15.01□□□□□ -0.01
SHH-201ENST00000297261 CYP2U1Q7Z449 544 aa15.01□□□□□ -0.01
SHH-201ENST00000297261 TMEM135Q86UB9 458 aa15.01□□□□□ -0.01
SHH-201ENST00000297261 COPS8Q99627 209 aa15.01□□□□□ -0.01
SHH-201ENST00000297261 NPLQ9BXD5 320 aaPredicted RBP15.01□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms