RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 CRYBG2Q8N1P7 616 aa9.67□□□□□ -0.86
COL6A3-201ENST00000295550 HJURPQ8NCD3 748 aaPredicted RBP9.67□□□□□ -0.86
COL6A3-201ENST00000295550 SLC30A2Q9BRI3 323 aa9.67□□□□□ -0.86
COL6A3-201ENST00000295550 NUDT4Q9NZJ9 180 aa9.67□□□□□ -0.86
COL6A3-201ENST00000295550 MRPS33Q9Y291 106 aaKnown RBP9.67□□□□□ -0.86
COL6A3-201ENST00000295550 SCN3AQ9NY46 2000 aa9.67□□□□□ -0.86
COL6A3-201ENST00000295550 TNRC6CQ9HCJ0 1690 aaKnown RBP9.67□□□□□ -0.86
COL6A3-201ENST00000295550 CARNS1A5YM72 827 aa9.67□□□□□ -0.86
COL6A3-201ENST00000295550 PDLIM1O00151 329 aa9.67□□□□□ -0.86
COL6A3-201ENST00000295550 TBX10O75333 385 aa9.67□□□□□ -0.86
COL6A3-201ENST00000295550 LAMP2P13473 410 aa9.67□□□□□ -0.86
COL6A3-201ENST00000295550 CPN2P22792 545 aa9.67□□□□□ -0.86
COL6A3-201ENST00000295550 GRM3Q14832 879 aa9.67□□□□□ -0.86
COL6A3-201ENST00000295550 PLA2G4EQ3MJ16 856 aa9.67□□□□□ -0.86
COL6A3-201ENST00000295550 LBX2Q6XYB7 198 aa9.67□□□□□ -0.86
COL6A3-201ENST00000295550 GALNT7Q86SF2 657 aa9.67□□□□□ -0.86
COL6A3-201ENST00000295550 SLC43A3Q8NBI5 491 aa9.67□□□□□ -0.86
COL6A3-201ENST00000295550 CMASQ8NFW8 434 aaPredicted RBP9.67□□□□□ -0.86
COL6A3-201ENST00000295550 PLEKHO2Q8TD55 490 aa9.67□□□□□ -0.86
COL6A3-201ENST00000295550 ASB9Q96DX5 294 aa9.67□□□□□ -0.86
COL6A3-201ENST00000295550 CNDP2Q96KP4 475 aaKnown RBP9.67□□□□□ -0.86
COL6A3-201ENST00000295550 MED31Q9Y3C7 131 aa9.67□□□□□ -0.86
COL6A3-201ENST00000295550 DOPEY2Q9Y3R5 2298 aa9.67□□□□□ -0.86
COL6A3-201ENST00000295550 KLRG2A4D1S0 409 aaPredicted RBP9.67□□□□□ -0.86
COL6A3-201ENST00000295550 HOXC12P31275 282 aa9.67□□□□□ -0.86
COL6A3-201ENST00000295550 OR3A3P47888 321 aa9.67□□□□□ -0.86
COL6A3-201ENST00000295550 OR3A2P47893 321 aa9.67□□□□□ -0.86
COL6A3-201ENST00000295550 ZBED5Q49AG3 693 aa9.67□□□□□ -0.86
COL6A3-201ENST00000295550 FBXO43Q4G163 708 aa9.67□□□□□ -0.86
COL6A3-201ENST00000295550 KLHL26Q53HC5 615 aa9.67□□□□□ -0.86
COL6A3-201ENST00000295550 MBLAC2Q68D91 279 aa9.67□□□□□ -0.86
COL6A3-201ENST00000295550 POMZP3Q6PJE2 187 aa9.67□□□□□ -0.86
COL6A3-201ENST00000295550 MON1AQ86VX9 555 aa9.67□□□□□ -0.86
COL6A3-201ENST00000295550 TESCQ96BS2 214 aa9.67□□□□□ -0.86
COL6A3-201ENST00000295550 FUZQ9BT04 418 aa9.67□□□□□ -0.86
COL6A3-201ENST00000295550 MSI1O43347 362 aaKnown RBP9.67□□□□□ -0.86
COL6A3-201ENST00000295550 NARSO43776 548 aaKnown RBP9.67□□□□□ -0.86
COL6A3-201ENST00000295550 CYB5AP00167 134 aa9.67□□□□□ -0.86
COL6A3-201ENST00000295550 ZNF20P17024 532 aa9.67□□□□□ -0.86
COL6A3-201ENST00000295550 ACVR2AP27037 513 aa9.67□□□□□ -0.86
COL6A3-201ENST00000295550 MAGEA6P43360 314 aa9.67□□□□□ -0.86
COL6A3-201ENST00000295550 GFOD2Q3B7J2 385 aa9.67□□□□□ -0.86
COL6A3-201ENST00000295550 ZNF311Q5JNZ3 666 aa9.67□□□□□ -0.86
COL6A3-201ENST00000295550 CLEC6AQ6EIG7 209 aa9.67□□□□□ -0.86
COL6A3-201ENST00000295550 PM20D2Q8IYS1 436 aa9.67□□□□□ -0.86
COL6A3-201ENST00000295550 ZSWIM3Q96MP5 696 aa9.67□□□□□ -0.86
COL6A3-201ENST00000295550 IFT27Q9BW83 186 aa9.67□□□□□ -0.86
COL6A3-201ENST00000295550 SMAD9O15198 467 aaKnown RBP9.67□□□□□ -0.86
COL6A3-201ENST00000295550 ACOX3O15254 700 aa9.67□□□□□ -0.86
COL6A3-201ENST00000295550 PET100P0DJ07 73 aa9.67□□□□□ -0.86
COL6A3-201ENST00000295550 THEGLP0DJG4 465 aa9.67□□□□□ -0.86
COL6A3-201ENST00000295550 PVALBP20472 110 aaPredicted RBP9.67□□□□□ -0.86
COL6A3-201ENST00000295550 ILF3Q12906 894 aaKnown RBP eCLIP9.67□□□□□ -0.86
COL6A3-201ENST00000295550 EGFL6Q8IUX8 553 aa9.67□□□□□ -0.86
COL6A3-201ENST00000295550 MSANTD3Q96H12 275 aa9.67□□□□□ -0.86
COL6A3-201ENST00000295550 TSSK3Q96PN8 268 aa9.67□□□□□ -0.86
COL6A3-201ENST00000295550 GAL3ST1Q99999 423 aa9.67□□□□□ -0.86
COL6A3-201ENST00000295550 SLC25A51Q9H1U9 297 aa9.67□□□□□ -0.86
COL6A3-201ENST00000295550 CFAP97Q9P2B7 532 aa9.67□□□□□ -0.86
COL6A3-201ENST00000295550 AGO1Q9UL18 857 aaKnown RBP9.67□□□□□ -0.86
COL6A3-201ENST00000295550 HSPB11Q9Y547 144 aa9.67□□□□□ -0.86
COL6A3-201ENST00000295550 POU2F1P14859 743 aa9.67□□□□□ -0.86
COL6A3-201ENST00000295550 GLDCP23378 1020 aa9.67□□□□□ -0.86
COL6A3-201ENST00000295550 SLC1A2P43004 574 aa9.67□□□□□ -0.86
COL6A3-201ENST00000295550 RAP1GAP2Q684P5 730 aa9.67□□□□□ -0.86
COL6A3-201ENST00000295550 RHBDF2Q6PJF5 856 aa9.67□□□□□ -0.86
COL6A3-201ENST00000295550 TRPM4Q8TD43 1214 aa9.67□□□□□ -0.86
COL6A3-201ENST00000295550 HSPBAP1Q96EW2 488 aa9.67□□□□□ -0.86
COL6A3-201ENST00000295550 EBF4Q9BQW3 602 aa9.67□□□□□ -0.86
COL6A3-201ENST00000295550 ZNF541Q9H0D2 1346 aa9.66□□□□□ -0.86
COL6A3-201ENST00000295550 MANSC4A6NHS7 340 aaPredicted RBP9.66□□□□□ -0.86
COL6A3-201ENST00000295550 BTBD19C9JJ37 291 aa9.66□□□□□ -0.86
COL6A3-201ENST00000295550 TYROBPO43914 113 aa9.66□□□□□ -0.86
COL6A3-201ENST00000295550 SPATS1Q496A3 300 aa9.66□□□□□ -0.86
COL6A3-201ENST00000295550 ALG10Q5BKT4 473 aa9.66□□□□□ -0.86
COL6A3-201ENST00000295550 XKR4Q5GH76 650 aa9.66□□□□□ -0.86
COL6A3-201ENST00000295550 RBM48Q5RL73 367 aaKnown RBP9.66□□□□□ -0.86
COL6A3-201ENST00000295550 TMPRSS11BQ86T26 416 aa9.66□□□□□ -0.86
COL6A3-201ENST00000295550 PNLDC1Q8NA58 520 aaKnown RBP9.66□□□□□ -0.86
COL6A3-201ENST00000295550 HEXDCQ8WVB3 486 aa9.66□□□□□ -0.86
COL6A3-201ENST00000295550 NTAN1Q96AB6 310 aa9.66□□□□□ -0.86
COL6A3-201ENST00000295550 ALDH2P05091 517 aa9.66□□□□□ -0.86
COL6A3-201ENST00000295550 ITPKBP27987 946 aa9.66□□□□□ -0.86
COL6A3-201ENST00000295550 NMBRP28336 390 aa9.66□□□□□ -0.86
COL6A3-201ENST00000295550 EIPR1Q53HC9 387 aa9.66□□□□□ -0.86
COL6A3-201ENST00000295550 KIAA0930Q6ICG6 404 aaPredicted RBP9.66□□□□□ -0.86
COL6A3-201ENST00000295550 ASB18Q6ZVZ8 466 aa9.66□□□□□ -0.86
COL6A3-201ENST00000295550 LPPQ93052 612 aa9.66□□□□□ -0.86
COL6A3-201ENST00000295550 ADAM2Q99965 735 aa9.66□□□□□ -0.86
COL6A3-201ENST00000295550 NUSAP1Q9BXS6 441 aaKnown RBP9.66□□□□□ -0.86
COL6A3-201ENST00000295550 EBPLQ9BY08 206 aa9.66□□□□□ -0.86
COL6A3-201ENST00000295550 DCSTAMPQ9H295 470 aa9.66□□□□□ -0.86
COL6A3-201ENST00000295550 CNTN6Q9UQ52 1028 aa9.66□□□□□ -0.86
COL6A3-201ENST00000295550 ZNF451Q9Y4E5 1061 aa9.66□□□□□ -0.86
COL6A3-201ENST00000295550 CXCR6O00574 342 aa9.66□□□□□ -0.86
COL6A3-201ENST00000295550 GABBR2O75899 941 aa9.66□□□□□ -0.86
COL6A3-201ENST00000295550 GTF2H2Q13888 395 aa9.66□□□□□ -0.86
COL6A3-201ENST00000295550 GTF2H2CQ6P1K8 395 aa9.66□□□□□ -0.86
COL6A3-201ENST00000295550 UBE2R2Q712K3 238 aaPredicted RBP9.66□□□□□ -0.86
COL6A3-201ENST00000295550 LIX1Q8N485 282 aa9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms