RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 PANX1Q96RD7 426 aa20.76■□□□□ 0.91
TRIM28-201ENST00000253024 P2RY13Q9BPV8 354 aa20.76■□□□□ 0.91
TRIM28-201ENST00000253024 ERVK-11Q9UQG0 969 aa20.76■□□□□ 0.91
TRIM28-201ENST00000253024 SNX5Q9Y5X3 404 aa20.76■□□□□ 0.91
TRIM28-201ENST00000253024 A0A1W2PRU2 124 aa20.76■□□□□ 0.91
TRIM28-201ENST00000253024 SH3PXD2BA1X283 911 aa20.76■□□□□ 0.91
TRIM28-201ENST00000253024 M0R129 80 aa20.76■□□□□ 0.91
TRIM28-201ENST00000253024 SAP18O00422 153 aaKnown RBP20.76■□□□□ 0.91
TRIM28-201ENST00000253024 CCSMST1Q4G0I0 132 aa20.76■□□□□ 0.91
TRIM28-201ENST00000253024 RUNDC3AQ59EK9 446 aa20.76■□□□□ 0.91
TRIM28-201ENST00000253024 ARL10Q8N8L6 244 aa20.76■□□□□ 0.91
TRIM28-201ENST00000253024 MTRRQ9UBK8 725 aa20.76■□□□□ 0.91
TRIM28-201ENST00000253024 PLXNA4Q9HCM2 1894 aa20.76■□□□□ 0.91
TRIM28-201ENST00000253024 ARNTLO00327 626 aa20.75■□□□□ 0.91
TRIM28-201ENST00000253024 SDC1P18827 310 aa20.75■□□□□ 0.91
TRIM28-201ENST00000253024 CYP2A13Q16696 494 aa20.75■□□□□ 0.91
TRIM28-201ENST00000253024 SLC8B1Q6J4K2 584 aa20.75■□□□□ 0.91
TRIM28-201ENST00000253024 PDE12Q6L8Q7 609 aaKnown RBP20.75■□□□□ 0.91
TRIM28-201ENST00000253024 Q6ZVU0 165 aa20.75■□□□□ 0.91
TRIM28-201ENST00000253024 OR52J3Q8NH60 311 aa20.75■□□□□ 0.91
TRIM28-201ENST00000253024 POLE4Q9NR33 117 aa20.75■□□□□ 0.91
TRIM28-201ENST00000253024 SELENONQ9NZV5 590 aa20.75■□□□□ 0.91
TRIM28-201ENST00000253024 ZNF639Q9UID6 485 aa20.75■□□□□ 0.91
TRIM28-201ENST00000253024 GBF1Q92538 1859 aa20.75■□□□□ 0.91
TRIM28-201ENST00000253024 BCKDKO14874 412 aa20.75■□□□□ 0.91
TRIM28-201ENST00000253024 ABCB7O75027 752 aa20.75■□□□□ 0.91
TRIM28-201ENST00000253024 RPLP2P05387 115 aaKnown RBP20.75■□□□□ 0.91
TRIM28-201ENST00000253024 OCM2P0CE71 109 aa20.75■□□□□ 0.91
TRIM28-201ENST00000253024 OCMP0CE72 109 aaPredicted RBP20.75■□□□□ 0.91
TRIM28-201ENST00000253024 SPAM1P38567 509 aa20.75■□□□□ 0.91
TRIM28-201ENST00000253024 OPRL1P41146 370 aa20.75■□□□□ 0.91
TRIM28-201ENST00000253024 CARTPTQ16568 116 aa20.75■□□□□ 0.91
TRIM28-201ENST00000253024 SMYD1Q8NB12 490 aa20.75■□□□□ 0.91
TRIM28-201ENST00000253024 PSD4Q8NDX1 1056 aa20.75■□□□□ 0.91
TRIM28-201ENST00000253024 DDHD1Q8NEL9 900 aa20.75■□□□□ 0.91
TRIM28-201ENST00000253024 RPL3LQ92901 407 aaKnown RBP20.75■□□□□ 0.91
TRIM28-201ENST00000253024 GLMNQ92990 594 aa20.75■□□□□ 0.91
TRIM28-201ENST00000253024 COPS8Q99627 209 aa20.75■□□□□ 0.91
TRIM28-201ENST00000253024 C2orf49Q9BVC5 232 aaPredicted RBP20.75■□□□□ 0.91
TRIM28-201ENST00000253024 TMEM121BQ9BXQ6 578 aaPredicted RBP20.75■□□□□ 0.91
TRIM28-201ENST00000253024 REXO4Q9GZR2 422 aaKnown RBP20.75■□□□□ 0.91
TRIM28-201ENST00000253024 MUC13Q9H3R2 512 aa20.75■□□□□ 0.91
TRIM28-201ENST00000253024 CLMPQ9H6B4 373 aa20.75■□□□□ 0.91
TRIM28-201ENST00000253024 SLC1A7O00341 560 aa20.74■□□□□ 0.91
TRIM28-201ENST00000253024 PREPP48147 710 aa20.74■□□□□ 0.91
TRIM28-201ENST00000253024 PPP2R2BQ00005 443 aa20.74■□□□□ 0.91
TRIM28-201ENST00000253024 RETSATQ6NUM9 610 aa20.74■□□□□ 0.91
TRIM28-201ENST00000253024 CHST9Q7L1S5 443 aa20.74■□□□□ 0.91
TRIM28-201ENST00000253024 C2orf73Q8N5S3 287 aaPredicted RBP20.74■□□□□ 0.91
TRIM28-201ENST00000253024 OR8J3Q8NGG0 315 aa20.74■□□□□ 0.91
TRIM28-201ENST00000253024 MCOLN3Q8TDD5 553 aa20.74■□□□□ 0.91
TRIM28-201ENST00000253024 ALOXE3Q9BYJ1 711 aa20.74■□□□□ 0.91
TRIM28-201ENST00000253024 OR51B4Q9Y5P0 310 aa20.74■□□□□ 0.91
TRIM28-201ENST00000253024 SCN5AQ14524 2016 aa20.74■□□□□ 0.91
TRIM28-201ENST00000253024 H7C0S8 307 aa20.74■□□□□ 0.91
TRIM28-201ENST00000253024 BCAS1O75363 584 aaPredicted RBP20.74■□□□□ 0.91
TRIM28-201ENST00000253024 MAGP20916 626 aa20.74■□□□□ 0.91
TRIM28-201ENST00000253024 CHIT1Q13231 466 aa20.74■□□□□ 0.91
TRIM28-201ENST00000253024 GRAMD4Q6IC98 578 aa20.74■□□□□ 0.91
TRIM28-201ENST00000253024 CERS6Q6ZMG9 384 aa20.74■□□□□ 0.91
TRIM28-201ENST00000253024 NDNFQ8TB73 568 aa20.74■□□□□ 0.91
TRIM28-201ENST00000253024 ALG14Q96F25 216 aa20.74■□□□□ 0.91
TRIM28-201ENST00000253024 NODALQ96S42 347 aa20.74■□□□□ 0.91
TRIM28-201ENST00000253024 SERHLQ9NQF3 203 aa20.74■□□□□ 0.91
TRIM28-201ENST00000253024 PABPN1LA6NDY0 278 aaKnown RBP20.73■□□□□ 0.91
TRIM28-201ENST00000253024 KRT6AP02538 564 aa20.73■□□□□ 0.91
TRIM28-201ENST00000253024 KRT6BP04259 564 aa20.73■□□□□ 0.91
TRIM28-201ENST00000253024 IGFBP5P24593 272 aa20.73■□□□□ 0.91
TRIM28-201ENST00000253024 CST5P28325 142 aaPredicted RBP20.73■□□□□ 0.91
TRIM28-201ENST00000253024 KRT6CP48668 564 aa20.73■□□□□ 0.91
TRIM28-201ENST00000253024 ELAVL2Q12926 359 aaKnown RBP20.73■□□□□ 0.91
TRIM28-201ENST00000253024 DCP2Q8IU60 420 aaKnown RBP20.73■□□□□ 0.91
TRIM28-201ENST00000253024 CENPSQ8N2Z9 138 aa20.73■□□□□ 0.91
TRIM28-201ENST00000253024 HJURPQ8NCD3 748 aaPredicted RBP20.73■□□□□ 0.91
TRIM28-201ENST00000253024 IGSF21Q96ID5 467 aa20.73■□□□□ 0.91
TRIM28-201ENST00000253024 PDP1Q9P0J1 537 aaPredicted RBP20.73■□□□□ 0.91
TRIM28-201ENST00000253024 CCL26Q9Y258 94 aa20.73■□□□□ 0.91
TRIM28-201ENST00000253024 BTBD3Q9Y2F9 522 aa20.73■□□□□ 0.91
TRIM28-201ENST00000253024 EYSQ5T1H1 3165 aa20.73■□□□□ 0.91
TRIM28-201ENST00000253024 TRIM64CA6NLI5 447 aa20.73■□□□□ 0.91
TRIM28-201ENST00000253024 SLC28A1O00337 649 aa20.73■□□□□ 0.91
TRIM28-201ENST00000253024 ANGPTL1O95841 491 aa20.73■□□□□ 0.91
TRIM28-201ENST00000253024 FUCA1P04066 466 aa20.73■□□□□ 0.91
TRIM28-201ENST00000253024 MSH3P20585 1137 aa20.73■□□□□ 0.91
TRIM28-201ENST00000253024 VLDLRP98155 873 aa20.73■□□□□ 0.91
TRIM28-201ENST00000253024 LHX8Q68G74 356 aa20.73■□□□□ 0.91
TRIM28-201ENST00000253024 CYP2U1Q7Z449 544 aa20.73■□□□□ 0.91
TRIM28-201ENST00000253024 SYT12Q8IV01 421 aa20.73■□□□□ 0.91
TRIM28-201ENST00000253024 ATG16L2Q8NAA4 619 aa20.73■□□□□ 0.91
TRIM28-201ENST00000253024 DCAF13Q9NV06 445 aaKnown RBP20.73■□□□□ 0.91
TRIM28-201ENST00000253024 TRNAU1APQ9NX07 287 aaKnown RBP20.73■□□□□ 0.91
TRIM28-201ENST00000253024 SH3BP1Q9Y3L3 701 aa20.73■□□□□ 0.91
TRIM28-201ENST00000253024 NINQ8N4C6 2090 aa20.73■□□□□ 0.91
TRIM28-201ENST00000253024 IL6P05231 212 aa20.73■□□□□ 0.91
TRIM28-201ENST00000253024 HIST1H2AGP0C0S8 130 aaPredicted RBP20.73■□□□□ 0.91
TRIM28-201ENST00000253024 ENGP17813 658 aa20.73■□□□□ 0.91
TRIM28-201ENST00000253024 HIST1H2ADP20671 130 aa20.73■□□□□ 0.91
TRIM28-201ENST00000253024 IER5LQ5T953 404 aa20.73■□□□□ 0.91
TRIM28-201ENST00000253024 TTC23Q5W5X9 447 aa20.73■□□□□ 0.91
TRIM28-201ENST00000253024 EGFLAMQ63HQ2 1017 aa20.73■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 66.7 ms