RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 TGFBIQ15582 683 aa13.31□□□□□ -0.28
LDLR-201ENST00000252444 ZNF605Q86T29 641 aa13.31□□□□□ -0.28
LDLR-201ENST00000252444 GOLM1Q8NBJ4 401 aa13.31□□□□□ -0.28
LDLR-201ENST00000252444 CEP76Q8TAP6 659 aa13.31□□□□□ -0.28
LDLR-201ENST00000252444 LMX1AQ8TE12 382 aa13.31□□□□□ -0.28
LDLR-201ENST00000252444 TPD52L3Q96J77 140 aa13.31□□□□□ -0.28
LDLR-201ENST00000252444 ATG10Q9H0Y0 220 aa13.31□□□□□ -0.28
LDLR-201ENST00000252444 CFIP05156 583 aa13.31□□□□□ -0.28
LDLR-201ENST00000252444 C1GALT1C1LP0DN25 315 aa13.31□□□□□ -0.28
LDLR-201ENST00000252444 MAT2AP31153 395 aaKnown RBP13.31□□□□□ -0.28
LDLR-201ENST00000252444 PITX1P78337 314 aaPredicted RBP13.31□□□□□ -0.28
LDLR-201ENST00000252444 MEF2AQ02078 507 aaPredicted RBP13.31□□□□□ -0.28
LDLR-201ENST00000252444 PON2Q15165 354 aa13.31□□□□□ -0.28
LDLR-201ENST00000252444 PCBP2Q15366 365 aaKnown RBP eCLIP13.31□□□□□ -0.281e-8■■□□□ 13.6
LDLR-201ENST00000252444 C5orf22Q49AR2 442 aa13.31□□□□□ -0.28
LDLR-201ENST00000252444 FAM78AQ5JUQ0 283 aa13.31□□□□□ -0.28
LDLR-201ENST00000252444 PLXDC1Q8IUK5 500 aa13.31□□□□□ -0.28
LDLR-201ENST00000252444 KBTBD2Q8IY47 623 aa13.31□□□□□ -0.28
LDLR-201ENST00000252444 MYDGFQ969H8 173 aa13.31□□□□□ -0.28
LDLR-201ENST00000252444 TSC22D3Q99576 134 aa13.31□□□□□ -0.28
LDLR-201ENST00000252444 SLC12A9Q9BXP2 914 aa13.31□□□□□ -0.28
LDLR-201ENST00000252444 AP1G1O43747 822 aa13.31□□□□□ -0.28
LDLR-201ENST00000252444 UGT1A9O60656 530 aa13.31□□□□□ -0.28
LDLR-201ENST00000252444 ERAL1O75616 437 aaKnown RBP13.31□□□□□ -0.28
LDLR-201ENST00000252444 IGHEP01854 428 aa13.31□□□□□ -0.28
LDLR-201ENST00000252444 KLK3P07288 261 aaPredicted RBP13.31□□□□□ -0.28
LDLR-201ENST00000252444 ZNF24P17028 368 aa13.31□□□□□ -0.28
LDLR-201ENST00000252444 UGT1A6P19224 532 aa13.31□□□□□ -0.28
LDLR-201ENST00000252444 UGT1A1P22309 533 aa13.31□□□□□ -0.28
LDLR-201ENST00000252444 CRISP3P54108 245 aa13.31□□□□□ -0.28
LDLR-201ENST00000252444 MLF2Q15773 248 aaPredicted RBP13.31□□□□□ -0.28
LDLR-201ENST00000252444 TYSND1Q2T9J0 566 aa13.31□□□□□ -0.28
LDLR-201ENST00000252444 LRRC74BQ6ZQY2 392 aa13.31□□□□□ -0.28
LDLR-201ENST00000252444 PEX5LQ8IYB4 626 aa13.31□□□□□ -0.28
LDLR-201ENST00000252444 C8orf59Q8N0T1 100 aaPredicted RBP13.31□□□□□ -0.28
LDLR-201ENST00000252444 TXNDC5Q8NBS9 432 aaKnown RBP13.31□□□□□ -0.28
LDLR-201ENST00000252444 TBCDQ9BTW9 1192 aa13.31□□□□□ -0.28
LDLR-201ENST00000252444 MECRQ9BV79 373 aa13.31□□□□□ -0.28
LDLR-201ENST00000252444 UGT1A7Q9HAW7 530 aa13.31□□□□□ -0.28
LDLR-201ENST00000252444 UGT1A10Q9HAW8 530 aa13.31□□□□□ -0.28
LDLR-201ENST00000252444 UGT1A8Q9HAW9 530 aa13.31□□□□□ -0.28
LDLR-201ENST00000252444 LHX3Q9UBR4 397 aa13.31□□□□□ -0.28
LDLR-201ENST00000252444 HS3ST3A1Q9Y663 406 aa13.31□□□□□ -0.28
LDLR-201ENST00000252444 OAS3Q9Y6K5 1087 aaKnown RBP13.31□□□□□ -0.28
LDLR-201ENST00000252444 SLC6A4P31645 630 aa13.3□□□□□ -0.28
LDLR-201ENST00000252444 CSTF2P33240 577 aaKnown RBP eCLIP13.3□□□□□ -0.28
LDLR-201ENST00000252444 ARSFP54793 590 aa13.3□□□□□ -0.28
LDLR-201ENST00000252444 POLE2P56282 527 aa13.3□□□□□ -0.28
LDLR-201ENST00000252444 ARHGAP8P85298 464 aa13.3□□□□□ -0.28
LDLR-201ENST00000252444 KHDRBS2Q5VWX1 349 aaKnown RBP13.3□□□□□ -0.28
LDLR-201ENST00000252444 LCTLQ6UWM7 567 aa13.3□□□□□ -0.28
LDLR-201ENST00000252444 TMIGD1Q6UXZ0 262 aa13.3□□□□□ -0.28
LDLR-201ENST00000252444 ADAMTSL4Q6UY14 1074 aa13.3□□□□□ -0.28
LDLR-201ENST00000252444 PHF10Q8WUB8 498 aaKnown RBP13.3□□□□□ -0.28
LDLR-201ENST00000252444 TXLNGYQ9BZA5 131 aa13.3□□□□□ -0.28
LDLR-201ENST00000252444 ABCG8Q9H221 673 aa13.3□□□□□ -0.28
LDLR-201ENST00000252444 PDE7BQ9NP56 450 aa13.3□□□□□ -0.28
LDLR-201ENST00000252444 CLN6Q9NWW5 311 aa13.3□□□□□ -0.28
LDLR-201ENST00000252444 HCN3Q9P1Z3 774 aa13.3□□□□□ -0.28
LDLR-201ENST00000252444 ZNF451Q9Y4E5 1061 aa13.3□□□□□ -0.28
LDLR-201ENST00000252444 A0A1W2PP55 124 aa13.3□□□□□ -0.28
LDLR-201ENST00000252444 WASH3PC4AMC7 463 aa13.3□□□□□ -0.28
LDLR-201ENST00000252444 JUPP14923 745 aa13.3□□□□□ -0.28
LDLR-201ENST00000252444 MYL12AP19105 171 aa13.3□□□□□ -0.28
LDLR-201ENST00000252444 ACADVLP49748 655 aa13.3□□□□□ -0.28
LDLR-201ENST00000252444 ITGA1P56199 1179 aa13.3□□□□□ -0.28
LDLR-201ENST00000252444 ADGRD2Q7Z7M1 963 aa13.3□□□□□ -0.28
LDLR-201ENST00000252444 ZC3H7AQ8IWR0 971 aaKnown RBP13.3□□□□□ -0.28
LDLR-201ENST00000252444 SLC2A6Q9UGQ3 507 aa13.3□□□□□ -0.28
LDLR-201ENST00000252444 PSMD13Q9UNM6 376 aa13.3□□□□□ -0.28
LDLR-201ENST00000252444 PADI2Q9Y2J8 665 aa13.3□□□□□ -0.28
LDLR-201ENST00000252444 H7C0S8 307 aa13.3□□□□□ -0.28
LDLR-201ENST00000252444 DLX3O60479 287 aa13.3□□□□□ -0.28
LDLR-201ENST00000252444 UGT2B17O75795 530 aa13.3□□□□□ -0.28
LDLR-201ENST00000252444 ERVFC1P60507 584 aa13.3□□□□□ -0.28
LDLR-201ENST00000252444 HKDC1Q2TB90 917 aa13.3□□□□□ -0.28
LDLR-201ENST00000252444 KIAA0895LQ68EN5 471 aa13.3□□□□□ -0.28
LDLR-201ENST00000252444 EPGNQ6UW88 154 aa13.3□□□□□ -0.28
LDLR-201ENST00000252444 HACD2Q6Y1H2 254 aa13.3□□□□□ -0.28
LDLR-201ENST00000252444 GCNT7Q6ZNI0 430 aa13.3□□□□□ -0.28
LDLR-201ENST00000252444 GPR141Q7Z602 305 aa13.3□□□□□ -0.28
LDLR-201ENST00000252444 LDB1Q86U70 411 aaPredicted RBP13.3□□□□□ -0.28
LDLR-201ENST00000252444 GALNT4Q8N4A0 578 aa13.3□□□□□ -0.28
LDLR-201ENST00000252444 ZFPM2Q8WW38 1151 aa13.3□□□□□ -0.28
LDLR-201ENST00000252444 STOML2Q9UJZ1 356 aa13.3□□□□□ -0.28
LDLR-201ENST00000252444 HYKKA2RU49 373 aa13.3□□□□□ -0.28
LDLR-201ENST00000252444 ALOX5P09917 674 aa13.3□□□□□ -0.28
LDLR-201ENST00000252444 ALDH4A1P30038 563 aa13.3□□□□□ -0.28
LDLR-201ENST00000252444 FGD3Q5JSP0 725 aa13.3□□□□□ -0.28
LDLR-201ENST00000252444 Q6ZVL8 140 aa13.3□□□□□ -0.28
LDLR-201ENST00000252444 SCAIQ8N9R8 606 aa13.3□□□□□ -0.28
LDLR-201ENST00000252444 COL26A1Q96A83 441 aa13.3□□□□□ -0.28
LDLR-201ENST00000252444 BRF2Q9HAW0 419 aa13.3□□□□□ -0.28
LDLR-201ENST00000252444 PRODH2Q9UF12 536 aa13.3□□□□□ -0.28
LDLR-201ENST00000252444 CYP8B1Q9UNU6 501 aa13.3□□□□□ -0.28
LDLR-201ENST00000252444 C5orf67F2Z3F1 127 aa13.29□□□□□ -0.28
LDLR-201ENST00000252444 H0YGN5 161 aa13.29□□□□□ -0.28
LDLR-201ENST00000252444 CAPN5O15484 640 aaPredicted RBP13.29□□□□□ -0.28
LDLR-201ENST00000252444 APOA1P02647 267 aa13.29□□□□□ -0.28
LDLR-201ENST00000252444 IVDP26440 423 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms