RNA–Protein interactions for RNA: ENST00000218348.7

USP11-201, Transcript of ubiquitin specific peptidase 11, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP11, Length 3,338 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP11-201ENST00000218348 KIAA2013Q8IYS2 634 aa9.72□□□□□ -0.85
USP11-201ENST00000218348 CPXM2Q8N436 756 aa9.72□□□□□ -0.85
USP11-201ENST00000218348 LSM14AQ8ND56 463 aaKnown RBP9.72□□□□□ -0.85
USP11-201ENST00000218348 SUSD6Q92537 303 aa9.72□□□□□ -0.85
USP11-201ENST00000218348 SMG7Q92540 1137 aaKnown RBP9.72□□□□□ -0.85
USP11-201ENST00000218348 NXPE3Q969Y0 559 aa9.72□□□□□ -0.85
USP11-201ENST00000218348 RHBDF1Q96CC6 855 aa9.72□□□□□ -0.85
USP11-201ENST00000218348 EGLN2Q96KS0 407 aa9.72□□□□□ -0.85
USP11-201ENST00000218348 MTERF1Q99551 399 aaKnown RBP9.72□□□□□ -0.85
USP11-201ENST00000218348 P2RY13Q9BPV8 354 aa9.72□□□□□ -0.85
USP11-201ENST00000218348 THUMPD3Q9BV44 507 aaKnown RBP9.72□□□□□ -0.85
USP11-201ENST00000218348 SIAEQ9HAT2 523 aa9.72□□□□□ -0.85
USP11-201ENST00000218348 PALMDQ9NP74 551 aa9.72□□□□□ -0.85
USP11-201ENST00000218348 AIG1Q9NVV5 245 aa9.72□□□□□ -0.85
USP11-201ENST00000218348 DUS2Q9NX74 493 aaKnown RBP9.72□□□□□ -0.85
USP11-201ENST00000218348 ZDHHC3Q9NYG2 299 aa9.72□□□□□ -0.85
USP11-201ENST00000218348 TMEM181Q9P2C4 612 aa9.72□□□□□ -0.85
USP11-201ENST00000218348 PDP2Q9P2J9 529 aa9.72□□□□□ -0.85
USP11-201ENST00000218348 CNOT6Q9ULM6 557 aaKnown RBP9.72□□□□□ -0.85
USP11-201ENST00000218348 ANKRD34BA5PLL1 514 aa9.71□□□□□ -0.85
USP11-201ENST00000218348 SLC22A2O15244 555 aa9.71□□□□□ -0.85
USP11-201ENST00000218348 OTCP00480 354 aa9.71□□□□□ -0.85
USP11-201ENST00000218348 C1QCP02747 245 aa9.71□□□□□ -0.85
USP11-201ENST00000218348 NRIP1P48552 1158 aa9.71□□□□□ -0.85
USP11-201ENST00000218348 ERVK-8P63133 956 aa9.71□□□□□ -0.85
USP11-201ENST00000218348 CTAG1AP78358 180 aa9.71□□□□□ -0.85
USP11-201ENST00000218348 PGS1Q32NB8 556 aa9.71□□□□□ -0.85
USP11-201ENST00000218348 Q7L0L9 218 aa9.71□□□□□ -0.85
USP11-201ENST00000218348 PHACTR4Q8IZ21 702 aa9.71□□□□□ -0.85
USP11-201ENST00000218348 RGL4Q8IZJ4 473 aa9.71□□□□□ -0.85
USP11-201ENST00000218348 LIX1Q8N485 282 aa9.71□□□□□ -0.85
USP11-201ENST00000218348 GIPC3Q8TF64 312 aa9.71□□□□□ -0.85
USP11-201ENST00000218348 GATA6Q92908 595 aa9.71□□□□□ -0.85
USP11-201ENST00000218348 ZNF382Q96SR6 550 aa9.71□□□□□ -0.85
USP11-201ENST00000218348 KCTD14Q9BQ13 255 aaPredicted RBP9.71□□□□□ -0.85
USP11-201ENST00000218348 CCDC177Q9NQR7 707 aaPredicted RBP9.71□□□□□ -0.85
USP11-201ENST00000218348 FAIMQ9NVQ4 179 aa9.71□□□□□ -0.85
USP11-201ENST00000218348 THEGQ9P2T0 379 aa9.71□□□□□ -0.85
USP11-201ENST00000218348 NIPSNAP3AQ9UFN0 247 aaPredicted RBP9.71□□□□□ -0.85
USP11-201ENST00000218348 HS3ST2Q9Y278 367 aa9.71□□□□□ -0.85
USP11-201ENST00000218348 ZFC3H1O60293 1989 aaKnown RBP9.71□□□□□ -0.85
USP11-201ENST00000218348 K7ESM1 405 aa9.71□□□□□ -0.86
USP11-201ENST00000218348 TSPAN6O43657 245 aa9.71□□□□□ -0.86
USP11-201ENST00000218348 SGTAO43765 313 aa9.71□□□□□ -0.86
USP11-201ENST00000218348 DFNA5O60443 496 aa9.71□□□□□ -0.86
USP11-201ENST00000218348 TSPAN9O75954 239 aa9.71□□□□□ -0.86
USP11-201ENST00000218348 LATS1O95835 1130 aa9.71□□□□□ -0.86
USP11-201ENST00000218348 HIST1H2AGP0C0S8 130 aaPredicted RBP9.71□□□□□ -0.86
USP11-201ENST00000218348 HIST1H2ADP20671 130 aa9.71□□□□□ -0.86
USP11-201ENST00000218348 EMP3P54852 163 aa9.71□□□□□ -0.86
USP11-201ENST00000218348 CASP9P55211 416 aa9.71□□□□□ -0.86
USP11-201ENST00000218348 OR4D2P58180 307 aa9.71□□□□□ -0.86
USP11-201ENST00000218348 DHCR24Q15392 516 aa9.71□□□□□ -0.86
USP11-201ENST00000218348 TTLL9Q3SXZ7 439 aa9.71□□□□□ -0.86
USP11-201ENST00000218348 SPANXN4Q5MJ08 99 aa9.71□□□□□ -0.86
USP11-201ENST00000218348 ANKRD26P1Q6NSI1 321 aa9.71□□□□□ -0.86
USP11-201ENST00000218348 NANOGP8Q6NSW7 305 aa9.71□□□□□ -0.86
USP11-201ENST00000218348 DOK6Q6PKX4 331 aa9.71□□□□□ -0.86
USP11-201ENST00000218348 CCBE1Q6UXH8 406 aaPredicted RBP9.71□□□□□ -0.86
USP11-201ENST00000218348 SELENOMQ8WWX9 145 aa9.71□□□□□ -0.86
USP11-201ENST00000218348 HIST1H2AHQ96KK5 128 aa9.71□□□□□ -0.86
USP11-201ENST00000218348 CDX2Q99626 313 aaPredicted RBP9.71□□□□□ -0.86
USP11-201ENST00000218348 HIST1H2AJQ99878 128 aa9.71□□□□□ -0.86
USP11-201ENST00000218348 H2AFJQ9BTM1 129 aa9.71□□□□□ -0.86
USP11-201ENST00000218348 CD244Q9BZW8 370 aa9.71□□□□□ -0.86
USP11-201ENST00000218348 ALG2Q9H553 416 aa9.71□□□□□ -0.86
USP11-201ENST00000218348 NANOGQ9H9S0 305 aa9.71□□□□□ -0.86
USP11-201ENST00000218348 C12orf4Q9NQ89 552 aa9.71□□□□□ -0.86
USP11-201ENST00000218348 DMDP11532 3685 aa9.71□□□□□ -0.86
USP11-201ENST00000218348 RNF103-CHMP3A0A140T963 221 aa9.71□□□□□ -0.86
USP11-201ENST00000218348 C7orf72A4D263 438 aa9.71□□□□□ -0.86
USP11-201ENST00000218348 FADS2P1A8MWK0 482 aa9.71□□□□□ -0.86
USP11-201ENST00000218348 SNPHO15079 494 aa9.71□□□□□ -0.86
USP11-201ENST00000218348 ARPC2O15144 300 aa9.71□□□□□ -0.86
USP11-201ENST00000218348 ANXA5P08758 320 aa9.71□□□□□ -0.86
USP11-201ENST00000218348 HNRNPA1P09651 372 aaKnown RBP eCLIP9.71□□□□□ -0.86
USP11-201ENST00000218348 OR56A5P0C7T3 313 aa9.71□□□□□ -0.86
USP11-201ENST00000218348 MSH3P20585 1137 aa9.71□□□□□ -0.86
USP11-201ENST00000218348 PDHA2P29803 388 aa9.71□□□□□ -0.86
USP11-201ENST00000218348 BDKRB1P46663 353 aa9.71□□□□□ -0.86
USP11-201ENST00000218348 DGKGP49619 791 aa9.71□□□□□ -0.86
USP11-201ENST00000218348 PRKG2Q13237 762 aa9.71□□□□□ -0.86
USP11-201ENST00000218348 PDCD4Q53EL6 469 aaKnown RBP9.71□□□□□ -0.86
USP11-201ENST00000218348 OTUD3Q5T2D3 398 aaPredicted RBP9.71□□□□□ -0.86
USP11-201ENST00000218348 ANKRD54Q6NXT1 300 aa9.71□□□□□ -0.86
USP11-201ENST00000218348 CRTC3Q6UUV7 619 aa9.71□□□□□ -0.86
USP11-201ENST00000218348 PATL1Q86TB9 770 aaKnown RBP9.71□□□□□ -0.86
USP11-201ENST00000218348 FAM217AQ8IXS0 508 aa9.71□□□□□ -0.86
USP11-201ENST00000218348 DEPDC4Q8N2C3 294 aa9.71□□□□□ -0.86
USP11-201ENST00000218348 GAB3Q8WWW8 586 aa9.71□□□□□ -0.86
USP11-201ENST00000218348 FIG4Q92562 907 aa9.71□□□□□ -0.86
USP11-201ENST00000218348 APOLD1Q96LR9 279 aa9.71□□□□□ -0.86
USP11-201ENST00000218348 CGREF1Q99674 301 aa9.71□□□□□ -0.86
USP11-201ENST00000218348 GID8Q9NWU2 228 aa9.71□□□□□ -0.86
USP11-201ENST00000218348 CD300AQ9UGN4 299 aa9.71□□□□□ -0.86
USP11-201ENST00000218348 BCAP29Q9UHQ4 241 aa9.71□□□□□ -0.86
USP11-201ENST00000218348 PTBP2Q9UKA9 531 aaKnown RBP9.71□□□□□ -0.86
USP11-201ENST00000218348 C15orf38-AP3S2A0A0A6YYH1 394 aa9.7□□□□□ -0.86
USP11-201ENST00000218348 A0A0B4J203 849 aa9.7□□□□□ -0.86
USP11-201ENST00000218348 A0A1W2PP18 115 aa9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms