RNA–Protein interactions for RNA: ENST00000211998.9

VCL-201, Transcript of vinculin, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VCL, Length 5,490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-201ENST00000211998 LHX5Q9H2C1 402 aa10.23□□□□□ -0.77
VCL-201ENST00000211998 GLOD4Q9HC38 313 aa10.23□□□□□ -0.77
VCL-201ENST00000211998 NECTIN3Q9NQS3 549 aa10.23□□□□□ -0.77
VCL-201ENST00000211998 AGO1Q9UL18 857 aaKnown RBP10.23□□□□□ -0.77
VCL-201ENST00000211998 HTR2AP28223 471 aa10.23□□□□□ -0.77
VCL-201ENST00000211998 TNFSF9P41273 254 aa10.23□□□□□ -0.77
VCL-201ENST00000211998 ZCCHC12Q6PEW1 402 aa10.23□□□□□ -0.77
VCL-201ENST00000211998 KLHL36Q8N4N3 616 aa10.23□□□□□ -0.77
VCL-201ENST00000211998 SLC38A4Q969I6 547 aa10.23□□□□□ -0.77
VCL-201ENST00000211998 TIFAQ96CG3 184 aa10.23□□□□□ -0.77
VCL-201ENST00000211998 SPACA7Q96KW9 195 aa10.23□□□□□ -0.77
VCL-201ENST00000211998 SOHLH2Q9NX45 425 aa10.23□□□□□ -0.77
VCL-201ENST00000211998 MARK1Q9P0L2 795 aa10.23□□□□□ -0.77
VCL-201ENST00000211998 COL20A1Q9P218 1284 aa10.23□□□□□ -0.77
VCL-201ENST00000211998 NOCTQ9UK39 431 aaKnown RBP10.23□□□□□ -0.77
VCL-201ENST00000211998 TLR4O00206 839 aa10.23□□□□□ -0.77
VCL-201ENST00000211998 PDCD5O14737 125 aa10.23□□□□□ -0.77
VCL-201ENST00000211998 SCAMP3O14828 347 aaKnown RBP10.23□□□□□ -0.77
VCL-201ENST00000211998 SMAD9O15198 467 aaKnown RBP10.23□□□□□ -0.77
VCL-201ENST00000211998 OGNP20774 298 aaKnown RBP10.23□□□□□ -0.77
VCL-201ENST00000211998 CDH5P33151 784 aaPredicted RBP10.23□□□□□ -0.77
VCL-201ENST00000211998 DSC3Q14574 896 aa10.23□□□□□ -0.77
VCL-201ENST00000211998 PIGGQ5H8A4 983 aa10.23□□□□□ -0.77
VCL-201ENST00000211998 DESI1Q6ICB0 168 aa10.23□□□□□ -0.77
VCL-201ENST00000211998 RGL4Q8IZJ4 473 aa10.23□□□□□ -0.77
VCL-201ENST00000211998 FAM109AQ8N4B1 249 aa10.23□□□□□ -0.77
VCL-201ENST00000211998 HDDC3Q8N4P3 179 aa10.23□□□□□ -0.77
VCL-201ENST00000211998 CERS5Q8N5B7 392 aa10.23□□□□□ -0.77
VCL-201ENST00000211998 SNAPC3Q92966 411 aa10.23□□□□□ -0.77
VCL-201ENST00000211998 GAL3ST1Q99999 423 aa10.23□□□□□ -0.77
VCL-201ENST00000211998 FAM124BQ9H5Z6 455 aaPredicted RBP10.23□□□□□ -0.77
VCL-201ENST00000211998 MEMO1Q9Y316 297 aa10.23□□□□□ -0.77
VCL-201ENST00000211998 HES2Q9Y543 173 aa10.23□□□□□ -0.77
VCL-201ENST00000211998 CEPT1Q9Y6K0 416 aa10.23□□□□□ -0.77
VCL-201ENST00000211998 BAZ2BQ9UIF8 2168 aaKnown RBP10.22□□□□□ -0.77
VCL-201ENST00000211998 NEMP2A6NFY4 417 aa10.22□□□□□ -0.77
VCL-201ENST00000211998 A8MU76 341 aa10.22□□□□□ -0.77
VCL-201ENST00000211998 MEN1O00255 615 aa10.22□□□□□ -0.77
VCL-201ENST00000211998 WRBO00258 174 aa10.22□□□□□ -0.77
VCL-201ENST00000211998 TPST2O60704 377 aa10.22□□□□□ -0.77
VCL-201ENST00000211998 HCN1O60741 890 aa10.22□□□□□ -0.77
VCL-201ENST00000211998 ERAL1O75616 437 aaKnown RBP10.22□□□□□ -0.77
VCL-201ENST00000211998 ADH1CP00326 375 aa10.22□□□□□ -0.77
VCL-201ENST00000211998 ZNF3P17036 446 aa10.22□□□□□ -0.77
VCL-201ENST00000211998 CD52P31358 61 aa10.22□□□□□ -0.77
VCL-201ENST00000211998 MC4RP32245 332 aa10.22□□□□□ -0.77
VCL-201ENST00000211998 GRIA1P42261 906 aa10.22□□□□□ -0.77
VCL-201ENST00000211998 FOXM1Q08050 763 aa10.22□□□□□ -0.77
VCL-201ENST00000211998 TARDBPQ13148 414 aaKnown RBP eCLIP10.22□□□□□ -0.772e-9■■■■■ 35.2
VCL-201ENST00000211998 NFE2L1Q14494 772 aa10.22□□□□□ -0.77
VCL-201ENST00000211998 GANABQ14697 944 aaKnown RBP10.22□□□□□ -0.77
VCL-201ENST00000211998 LRRC66Q68CR7 880 aa10.22□□□□□ -0.77
VCL-201ENST00000211998 CHADLQ6NUI6 762 aa10.22□□□□□ -0.77
VCL-201ENST00000211998 ANKRD54Q6NXT1 300 aa10.22□□□□□ -0.77
VCL-201ENST00000211998 TATDN1Q6P1N9 297 aa10.22□□□□□ -0.77
VCL-201ENST00000211998 PNCKQ6P2M8 343 aa10.22□□□□□ -0.77
VCL-201ENST00000211998 NCEH1Q6PIU2 408 aa10.22□□□□□ -0.77
VCL-201ENST00000211998 CHERPQ8IWX8 916 aaKnown RBP10.22□□□□□ -0.77
VCL-201ENST00000211998 OR9I1Q8NGQ6 314 aa10.22□□□□□ -0.77
VCL-201ENST00000211998 AARSD1Q9BTE6 412 aaKnown RBP10.22□□□□□ -0.77
VCL-201ENST00000211998 NUSAP1Q9BXS6 441 aaKnown RBP10.22□□□□□ -0.77
VCL-201ENST00000211998 POLR2J3Q9H1A7 115 aaKnown RBP10.22□□□□□ -0.77
VCL-201ENST00000211998 NANSQ9NR45 359 aa10.22□□□□□ -0.77
VCL-201ENST00000211998 C1orf109Q9NX04 203 aa10.22□□□□□ -0.77
VCL-201ENST00000211998 SEC14L4Q9UDX3 406 aa10.22□□□□□ -0.77
VCL-201ENST00000211998 PCDHGB3Q9Y5G1 929 aa10.22□□□□□ -0.77
VCL-201ENST00000211998 ANXA2P2A6NMY6 339 aa10.22□□□□□ -0.77
VCL-201ENST00000211998 CLCA1A8K7I4 914 aa10.22□□□□□ -0.77
VCL-201ENST00000211998 ANXA2P07355 339 aaKnown RBP10.22□□□□□ -0.77
VCL-201ENST00000211998 SAGP10523 405 aaPredicted RBP10.22□□□□□ -0.77
VCL-201ENST00000211998 FGL2Q14314 439 aa10.22□□□□□ -0.77
VCL-201ENST00000211998 FGFBP1Q14512 234 aa10.22□□□□□ -0.77
VCL-201ENST00000211998 DEFB115Q30KQ5 88 aa10.22□□□□□ -0.77
VCL-201ENST00000211998 KIAA1324Q6UXG2 1013 aaKnown RBP10.22□□□□□ -0.77
VCL-201ENST00000211998 STRADAQ7RTN6 431 aa10.22□□□□□ -0.77
VCL-201ENST00000211998 PAQR7Q86WK9 346 aa10.22□□□□□ -0.77
VCL-201ENST00000211998 PDZD9Q8IXQ8 264 aa10.22□□□□□ -0.77
VCL-201ENST00000211998 RBFAQ8N0V3 343 aa10.22□□□□□ -0.77
VCL-201ENST00000211998 LGI4Q8N135 537 aa10.22□□□□□ -0.77
VCL-201ENST00000211998 ZNF675Q8TD23 568 aa10.22□□□□□ -0.77
VCL-201ENST00000211998 ASB15Q8WXK1 588 aa10.22□□□□□ -0.77
VCL-201ENST00000211998 FATE1Q969F0 183 aa10.22□□□□□ -0.77
VCL-201ENST00000211998 RNF31Q96EP0 1072 aa10.22□□□□□ -0.77
VCL-201ENST00000211998 PRR11Q96HE9 360 aaPredicted RBP10.22□□□□□ -0.77
VCL-201ENST00000211998 IFT46Q9NQC8 304 aa10.22□□□□□ -0.77
VCL-201ENST00000211998 SMOXQ9NWM0 555 aa10.22□□□□□ -0.77
VCL-201ENST00000211998 ADGRB2O60241 1585 aa10.22□□□□□ -0.77
VCL-201ENST00000211998 ARHGEF28Q8N1W1 1705 aaKnown RBP10.22□□□□□ -0.77
VCL-201ENST00000211998 DAPL1A0PJW8 107 aa10.22□□□□□ -0.77
VCL-201ENST00000211998 RIIAD1A6NNX1 92 aa10.22□□□□□ -0.77
VCL-201ENST00000211998 SEPT4O43236 478 aa10.22□□□□□ -0.77
VCL-201ENST00000211998 NUDT7P0C024 238 aa10.22□□□□□ -0.77
VCL-201ENST00000211998 HTR7P34969 479 aa10.22□□□□□ -0.77
VCL-201ENST00000211998 RORAP35398 523 aa10.22□□□□□ -0.77
VCL-201ENST00000211998 TAS2R39P59534 338 aa10.22□□□□□ -0.77
VCL-201ENST00000211998 SMAD3P84022 425 aaKnown RBP10.22□□□□□ -0.77
VCL-201ENST00000211998 FADDQ13158 208 aa10.22□□□□□ -0.77
VCL-201ENST00000211998 TUSC3Q13454 348 aa10.22□□□□□ -0.77
VCL-201ENST00000211998 HEPACAMQ14CZ8 416 aa10.22□□□□□ -0.77
VCL-201ENST00000211998 ZMYND11Q15326 602 aa10.22□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms